RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 ACSM4P0C7M7 580 aa16.74■□□□□ 0.27
USP39-202ENST00000409025 SCAND1P57086 179 aa16.74■□□□□ 0.27
USP39-202ENST00000409025 ARG2P78540 354 aa16.74■□□□□ 0.27
USP39-202ENST00000409025 HYAL4Q2M3T9 481 aa16.74■□□□□ 0.27
USP39-202ENST00000409025 LUZP2Q86TE4 346 aa16.74■□□□□ 0.27
USP39-202ENST00000409025 CELF2-AS1Q8N7Q2 184 aa16.74■□□□□ 0.27
USP39-202ENST00000409025 GJC3Q8NFK1 279 aa16.74■□□□□ 0.27
USP39-202ENST00000409025 NABP1Q96AH0 204 aa16.74■□□□□ 0.27
USP39-202ENST00000409025 SLC6A15Q9H2J7 730 aa16.74■□□□□ 0.27
USP39-202ENST00000409025 TAS2R4Q9NYW5 299 aa16.74■□□□□ 0.27
USP39-202ENST00000409025 NUFIP1Q9UHK0 495 aaKnown RBP16.74■□□□□ 0.27
USP39-202ENST00000409025 MRPS7Q9Y2R9 242 aaKnown RBP16.74■□□□□ 0.27
USP39-202ENST00000409025 PHF3Q92576 2039 aaKnown RBP16.74■□□□□ 0.27
USP39-202ENST00000409025 IGFBP3P17936 291 aaPredicted RBP16.74■□□□□ 0.27
USP39-202ENST00000409025 CFPP27918 469 aa16.74■□□□□ 0.27
USP39-202ENST00000409025 MAP2K3P46734 347 aa16.74■□□□□ 0.27
USP39-202ENST00000409025 NOVA1P51513 510 aaKnown RBP16.74■□□□□ 0.27
USP39-202ENST00000409025 PRKXP51817 358 aa16.74■□□□□ 0.27
USP39-202ENST00000409025 SRYQ05066 204 aa16.74■□□□□ 0.27
USP39-202ENST00000409025 ENDOGQ14249 297 aaKnown RBP16.74■□□□□ 0.27
USP39-202ENST00000409025 HACD4Q5VWC8 232 aa16.74■□□□□ 0.27
USP39-202ENST00000409025 ASPHD2Q6ICH7 369 aa16.74■□□□□ 0.27
USP39-202ENST00000409025 TMPRSS7Q7RTY8 843 aa16.74■□□□□ 0.27
USP39-202ENST00000409025 MEIOBQ8N635 442 aa16.74■□□□□ 0.27
USP39-202ENST00000409025 ENKURQ8TC29 256 aa16.74■□□□□ 0.27
USP39-202ENST00000409025 RAB40AQ8WXH6 277 aa16.74■□□□□ 0.27
USP39-202ENST00000409025 HAS2Q92819 552 aa16.74■□□□□ 0.27
USP39-202ENST00000409025 SLC25A38Q96DW6 304 aa16.74■□□□□ 0.27
USP39-202ENST00000409025 ABCG5Q9H222 651 aa16.74■□□□□ 0.27
USP39-202ENST00000409025 EP300Q09472 2414 aaPredicted RBP16.73■□□□□ 0.27
USP39-202ENST00000409025 EEF1E1O43324 174 aaKnown RBP16.73■□□□□ 0.27
USP39-202ENST00000409025 LYRM1O43325 122 aa16.73■□□□□ 0.27
USP39-202ENST00000409025 MMP15P51511 669 aa16.73■□□□□ 0.27
USP39-202ENST00000409025 ART1P52961 327 aa16.73■□□□□ 0.27
USP39-202ENST00000409025 CLDN18P56856 261 aa16.73■□□□□ 0.27
USP39-202ENST00000409025 PPIAP62937 165 aaKnown RBP16.73■□□□□ 0.27
USP39-202ENST00000409025 MRPS34P82930 218 aaKnown RBP16.73■□□□□ 0.27
USP39-202ENST00000409025 GLT8D1Q68CQ7 371 aa16.73■□□□□ 0.27
USP39-202ENST00000409025 UBE2J2Q8N2K1 259 aa16.73■□□□□ 0.27
USP39-202ENST00000409025 GPR137CQ8N3F9 429 aa16.73■□□□□ 0.27
USP39-202ENST00000409025 SYNPRQ8TBG9 265 aa16.73■□□□□ 0.27
USP39-202ENST00000409025 S100A16Q96FQ6 103 aaKnown RBP16.73■□□□□ 0.27
USP39-202ENST00000409025 ZFP3Q96NJ6 502 aa16.73■□□□□ 0.27
USP39-202ENST00000409025 DDX28Q9NUL7 540 aaKnown RBP16.73■□□□□ 0.27
USP39-202ENST00000409025 CDV3Q9UKY7 258 aaKnown RBP16.73■□□□□ 0.27
USP39-202ENST00000409025 CNTRLQ7Z7A1 2325 aa16.73■□□□□ 0.27
USP39-202ENST00000409025 MEGF11A6BM72 1044 aa16.72■□□□□ 0.27
USP39-202ENST00000409025 SYT7O43581 403 aa16.72■□□□□ 0.27
USP39-202ENST00000409025 ZNF708P17019 499 aa16.72■□□□□ 0.27
USP39-202ENST00000409025 CX3CR1P49238 355 aa16.72■□□□□ 0.27
USP39-202ENST00000409025 SRSF6Q13247 344 aaKnown RBP16.72■□□□□ 0.27
USP39-202ENST00000409025 LRRC18Q8N456 261 aa16.72■□□□□ 0.27
USP39-202ENST00000409025 ZNF283Q8N7M2 679 aa16.72■□□□□ 0.27
USP39-202ENST00000409025 TRIM63Q969Q1 353 aa16.72■□□□□ 0.27
USP39-202ENST00000409025 ZNF552Q9H707 407 aaPredicted RBP16.72■□□□□ 0.27
USP39-202ENST00000409025 RBFOX1Q9NWB1 397 aaKnown RBP16.72■□□□□ 0.27
USP39-202ENST00000409025 A0A1B0GVI7 797 aa16.72■□□□□ 0.27
USP39-202ENST00000409025 SLC17A2O00624 439 aa16.72■□□□□ 0.27
USP39-202ENST00000409025 CTDSPLO15194 276 aa16.72■□□□□ 0.27
USP39-202ENST00000409025 ADRB1P08588 477 aa16.72■□□□□ 0.27
USP39-202ENST00000409025 NTF4P34130 210 aa16.72■□□□□ 0.27
USP39-202ENST00000409025 ZNF121P58317 390 aaPredicted RBP16.72■□□□□ 0.27
USP39-202ENST00000409025 RAB11BQ15907 218 aa16.72■□□□□ 0.27
USP39-202ENST00000409025 ZNF766Q5HY98 468 aa16.72■□□□□ 0.27
USP39-202ENST00000409025 FAM27BQ5VT28 67 aa16.72■□□□□ 0.27
USP39-202ENST00000409025 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.72■□□□□ 0.27
USP39-202ENST00000409025 ZFP62Q8NB50 900 aaPredicted RBP16.72■□□□□ 0.27
USP39-202ENST00000409025 TMEM178AQ8NBL3 297 aa16.72■□□□□ 0.27
USP39-202ENST00000409025 CPT1CQ8TCG5 803 aa16.72■□□□□ 0.27
USP39-202ENST00000409025 ABHD3Q8WU67 409 aa16.72■□□□□ 0.27
USP39-202ENST00000409025 SCMH1Q96GD3 660 aa16.72■□□□□ 0.27
USP39-202ENST00000409025 ZNF275Q9NSD4 429 aaPredicted RBP16.72■□□□□ 0.27
USP39-202ENST00000409025 TM4SF5O14894 197 aa16.71■□□□□ 0.27
USP39-202ENST00000409025 LANCL1O43813 399 aa16.71■□□□□ 0.27
USP39-202ENST00000409025 SYNGR4O95473 234 aa16.71■□□□□ 0.27
USP39-202ENST00000409025 CTSSP25774 331 aa16.71■□□□□ 0.27
USP39-202ENST00000409025 HIST1H3AP68431 136 aa16.71■□□□□ 0.27
USP39-202ENST00000409025 HIST2H3PS2Q5TEC6 136 aa16.71■□□□□ 0.27
USP39-202ENST00000409025 HIST2H3AQ71DI3 136 aa16.71■□□□□ 0.27
USP39-202ENST00000409025 IZUMO1Q8IYV9 350 aa16.71■□□□□ 0.27
USP39-202ENST00000409025 PLPP7Q8NBV4 271 aa16.71■□□□□ 0.27
USP39-202ENST00000409025 HAVCR1Q96D42 359 aa16.71■□□□□ 0.27
USP39-202ENST00000409025 ZNF837Q96EG3 531 aaPredicted RBP16.71■□□□□ 0.27
USP39-202ENST00000409025 ZC3HAV1LQ96H79 300 aaKnown RBP16.71■□□□□ 0.27
USP39-202ENST00000409025 CRLF2Q9HC73 371 aa16.71■□□□□ 0.27
USP39-202ENST00000409025 PAQR5Q9NXK6 330 aaPredicted RBP16.71■□□□□ 0.27
USP39-202ENST00000409025 N6AMT1Q9Y5N5 214 aa16.71■□□□□ 0.27
USP39-202ENST00000409025 LMX1BO60663 402 aa16.7■□□□□ 0.26
USP39-202ENST00000409025 ITGA5P08648 1049 aa16.7■□□□□ 0.26
USP39-202ENST00000409025 KIR2DL3P43628 341 aa16.7■□□□□ 0.26
USP39-202ENST00000409025 GALK2Q01415 458 aa16.7■□□□□ 0.26
USP39-202ENST00000409025 SLC10A1Q14973 349 aa16.7■□□□□ 0.26
USP39-202ENST00000409025 BCL2A1Q16548 175 aa16.7■□□□□ 0.26
USP39-202ENST00000409025 FAM109AQ8N4B1 249 aa16.7■□□□□ 0.26
USP39-202ENST00000409025 TMEM45BQ96B21 275 aa16.7■□□□□ 0.26
USP39-202ENST00000409025 FGGYQ96C11 551 aa16.7■□□□□ 0.26
USP39-202ENST00000409025 MMP28Q9H239 520 aa16.7■□□□□ 0.26
USP39-202ENST00000409025 ACKR4Q9NPB9 350 aa16.7■□□□□ 0.26
USP39-202ENST00000409025 ACOT7O00154 380 aa16.7■□□□□ 0.26
USP39-202ENST00000409025 GSTZ1O43708 216 aaPredicted RBP16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms