RNA–Protein interactions for RNA: ENST00000569245.5

COMMD4-225, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-225ENST00000569245 TMED1Q13445 227 aa12.53□□□□□ -0.4
COMMD4-225ENST00000569245 CYB561A3Q8NBI2 242 aa12.53□□□□□ -0.4
COMMD4-225ENST00000569245 NOXO1Q8NFA2 376 aa12.53□□□□□ -0.4
COMMD4-225ENST00000569245 FNDC8Q8TC99 324 aa12.53□□□□□ -0.4
COMMD4-225ENST00000569245 RFKQ969G6 155 aa12.53□□□□□ -0.4
COMMD4-225ENST00000569245 SH3GL3Q99963 347 aa12.53□□□□□ -0.4
COMMD4-225ENST00000569245 RHNO1Q9BSD3 238 aa12.53□□□□□ -0.4
COMMD4-225ENST00000569245 RNF121Q9H920 327 aa12.53□□□□□ -0.4
COMMD4-225ENST00000569245 NOX3Q9HBY0 568 aa12.53□□□□□ -0.4
COMMD4-225ENST00000569245 TMEM38BQ9NVV0 291 aa12.53□□□□□ -0.4
COMMD4-225ENST00000569245 H2AFY2Q9P0M6 372 aaPredicted RBP12.53□□□□□ -0.4
COMMD4-225ENST00000569245 BLOC1S6Q9UL45 172 aa12.53□□□□□ -0.4
COMMD4-225ENST00000569245 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.53□□□□□ -0.4
COMMD4-225ENST00000569245 RPL36Q9Y3U8 105 aaKnown RBP12.53□□□□□ -0.4
COMMD4-225ENST00000569245 SPEF1Q9Y4P9 236 aa12.53□□□□□ -0.4
COMMD4-225ENST00000569245 C2CD3Q4AC94 2353 aa12.52□□□□□ -0.4
COMMD4-225ENST00000569245 SLC22A23A1A5C7 686 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 H7C417 338 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 CRHBPP24387 322 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 HTR1FP30939 366 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 THBS4P35443 961 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 SLC15A1P46059 708 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 GALK2Q01415 458 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 HGFACQ04756 655 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 ADIPOQQ15848 244 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 KCTD21Q4G0X4 260 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 CLEC2AQ6UVW9 174 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 MEPCEQ7L2J0 689 aaKnown RBP12.52□□□□□ -0.41
COMMD4-225ENST00000569245 BCDIN3DQ7Z5W3 292 aaKnown RBP12.52□□□□□ -0.41
COMMD4-225ENST00000569245 MAPK1IP1LQ8NDC0 245 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 NUP37Q8NFH4 326 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 BBS1Q8NFJ9 593 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 BPIFB6Q8NFQ5 453 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 NSMAFQ92636 917 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 MS4A3Q96HJ5 214 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 VRK1Q99986 396 aaPredicted RBP12.52□□□□□ -0.41
COMMD4-225ENST00000569245 HCAR1Q9BXC0 346 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 REG4Q9BYZ8 158 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 ZNF696Q9H7X3 374 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 MED20Q9H944 212 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 MRPS18AQ9NVS2 196 aaKnown RBP12.52□□□□□ -0.41
COMMD4-225ENST00000569245 SCN3BQ9NY72 215 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 FBXL3Q9UKT7 428 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 TPRKBQ9Y3C4 175 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 FKBP7Q9Y680 259 aa12.52□□□□□ -0.41
COMMD4-225ENST00000569245 SLC22A31A6NKX4 558 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 B9A039 149 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 XPNPEP2O43895 674 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 FAM20BO75063 409 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 HEXAP06865 529 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 LYNP07948 512 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 PIPP12273 146 aaPredicted RBP12.51□□□□□ -0.41
COMMD4-225ENST00000569245 NR2C1P13056 603 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 SPI1P17947 270 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 NPR2P20594 1047 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 DSCR9P59020 149 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 GABARAPL2P60520 117 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 SNTB2Q13425 540 aaKnown RBP12.51□□□□□ -0.41
COMMD4-225ENST00000569245 RAB39AQ14964 217 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 HIST3H3Q16695 136 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 SWI5Q1ZZU3 235 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 MST1LQ2TV78 715 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 SLC36A2Q495M3 483 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 SLC35D3Q5M8T2 416 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 TMEM53Q6P2H8 277 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 SLC16A14Q7RTX9 510 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 ZBTB46Q86UZ6 589 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 LRRC18Q8N456 261 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 OR2T4Q8NH00 348 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 IPCEF1Q8WWN9 437 aaPredicted RBP12.51□□□□□ -0.41
COMMD4-225ENST00000569245 OTULINQ96BN8 352 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 NMD3Q96D46 503 aaKnown RBP12.51□□□□□ -0.41
COMMD4-225ENST00000569245 RBP7Q96R05 134 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 SYT4Q9H2B2 425 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 KCNN2Q9H2S1 579 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 DUSP21Q9H596 190 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 RPRD1BQ9NQG5 326 aaKnown RBP12.51□□□□□ -0.41
COMMD4-225ENST00000569245 FKBP14Q9NWM8 211 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 HAO2Q9NYQ3 351 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 ZNF224Q9NZL3 707 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 CNOT2Q9NZN8 540 aaKnown RBP12.51□□□□□ -0.41
COMMD4-225ENST00000569245 WARS2Q9UGM6 360 aaKnown RBP12.51□□□□□ -0.41
COMMD4-225ENST00000569245 PSORS1C1Q9UIG5 152 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 B9D1Q9UPM9 204 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 PLCE1Q9P212 2302 aa12.51□□□□□ -0.41
COMMD4-225ENST00000569245 MAGEA13PA6NCF6 341 aa12.5□□□□□ -0.41
COMMD4-225ENST00000569245 CCDC182A6NF36 153 aa12.5□□□□□ -0.41
COMMD4-225ENST00000569245 EFCAB10A6NFE3 127 aa12.5□□□□□ -0.41
COMMD4-225ENST00000569245 H7C1C5 153 aa12.5□□□□□ -0.41
COMMD4-225ENST00000569245 F12P00748 615 aaPredicted RBP12.5□□□□□ -0.41
COMMD4-225ENST00000569245 DBTP11182 482 aaKnown RBP12.5□□□□□ -0.41
COMMD4-225ENST00000569245 ZNF14P17017 642 aaPredicted RBP12.5□□□□□ -0.41
COMMD4-225ENST00000569245 NR4A1P22736 598 aa12.5□□□□□ -0.41
COMMD4-225ENST00000569245 CRABP1P29762 137 aa12.5□□□□□ -0.41
COMMD4-225ENST00000569245 GUCA1AP43080 201 aaPredicted RBP12.5□□□□□ -0.41
COMMD4-225ENST00000569245 MTNR1AP48039 350 aa12.5□□□□□ -0.41
COMMD4-225ENST00000569245 CENPAP49450 140 aa12.5□□□□□ -0.41
COMMD4-225ENST00000569245 ZNF133P52736 654 aaPredicted RBP12.5□□□□□ -0.41
COMMD4-225ENST00000569245 EFNA4P52798 201 aa12.5□□□□□ -0.41
COMMD4-225ENST00000569245 LCN6P62502 163 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms