RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 Q6ZR03 302 aa17.58■□□□□ 0.4
SDC1-205ENST00000447124 C1orf229Q6ZS94 237 aaPredicted RBP17.58■□□□□ 0.4
SDC1-205ENST00000447124 OR51F2Q8NH61 342 aa17.58■□□□□ 0.4
SDC1-205ENST00000447124 NSRP1Q9H0G5 558 aaKnown RBP17.58■□□□□ 0.4
SDC1-205ENST00000447124 G6PC2Q9NQR9 355 aa17.58■□□□□ 0.4
SDC1-205ENST00000447124 PLEK2Q9NYT0 353 aa17.58■□□□□ 0.4
SDC1-205ENST00000447124 TAGLN3Q9UI15 199 aa17.58■□□□□ 0.4
SDC1-205ENST00000447124 MAGEL2Q9UJ55 1249 aa17.58■□□□□ 0.4
SDC1-205ENST00000447124 PURGQ9UJV8 347 aaKnown RBP17.58■□□□□ 0.4
SDC1-205ENST00000447124 ZDHHC8Q9ULC8 765 aa17.58■□□□□ 0.4
SDC1-205ENST00000447124 B9D1Q9UPM9 204 aa17.58■□□□□ 0.4
SDC1-205ENST00000447124 CLDN25C9JDP6 229 aa17.57■□□□□ 0.4
SDC1-205ENST00000447124 ARPC2O15144 300 aa17.57■□□□□ 0.4
SDC1-205ENST00000447124 PLPP2O43688 288 aa17.57■□□□□ 0.4
SDC1-205ENST00000447124 CD55P08174 381 aa17.57■□□□□ 0.4
SDC1-205ENST00000447124 DBHP09172 617 aa17.57■□□□□ 0.4
SDC1-205ENST00000447124 PCMT1P22061 227 aa17.57■□□□□ 0.4
SDC1-205ENST00000447124 ERFP50548 548 aa17.57■□□□□ 0.4
SDC1-205ENST00000447124 RPS6KA3P51812 740 aa17.57■□□□□ 0.4
SDC1-205ENST00000447124 SMIM11AP58511 58 aa17.57■□□□□ 0.4
SDC1-205ENST00000447124 SPIBQ01892 262 aa17.57■□□□□ 0.4
SDC1-205ENST00000447124 MEP1BQ16820 701 aa17.57■□□□□ 0.4
SDC1-205ENST00000447124 SAMD4BQ5PRF9 694 aaKnown RBP17.57■□□□□ 0.4
SDC1-205ENST00000447124 ACSM5Q6NUN0 579 aa17.57■□□□□ 0.4
SDC1-205ENST00000447124 ADCK1Q86TW2 530 aa17.57■□□□□ 0.4
SDC1-205ENST00000447124 OR6V1Q8N148 313 aa17.57■□□□□ 0.4
SDC1-205ENST00000447124 RFLNBQ8N5W9 214 aa17.57■□□□□ 0.4
SDC1-205ENST00000447124 OR1F12Q8NHA8 337 aa17.57■□□□□ 0.4
SDC1-205ENST00000447124 RAB1CQ92928 201 aa17.57■□□□□ 0.4
SDC1-205ENST00000447124 HAVCR1Q96D42 359 aa17.57■□□□□ 0.4
SDC1-205ENST00000447124 NSMCE2Q96MF7 247 aa17.57■□□□□ 0.4
SDC1-205ENST00000447124 ERMAPQ96PL5 475 aaPredicted RBP17.57■□□□□ 0.4
SDC1-205ENST00000447124 OR52D1Q9H346 318 aa17.57■□□□□ 0.4
SDC1-205ENST00000447124 SRA1Q9HD15 236 aaKnown RBP17.57■□□□□ 0.4
SDC1-205ENST00000447124 ARL2BPQ9Y2Y0 163 aa17.57■□□□□ 0.4
SDC1-205ENST00000447124 IGLV1-36A0A0B4J1U3 117 aa17.56■□□□□ 0.4
SDC1-205ENST00000447124 TIMM8AO60220 97 aaPredicted RBP17.56■□□□□ 0.4
SDC1-205ENST00000447124 IGHV2-5P01817 119 aa17.56■□□□□ 0.4
SDC1-205ENST00000447124 KITLGP21583 273 aa17.56■□□□□ 0.4
SDC1-205ENST00000447124 HIST1H3AP68431 136 aa17.56■□□□□ 0.4
SDC1-205ENST00000447124 RSPO1Q2MKA7 263 aaPredicted RBP17.56■□□□□ 0.4
SDC1-205ENST00000447124 HIST2H3PS2Q5TEC6 136 aa17.56■□□□□ 0.4
SDC1-205ENST00000447124 C1orf94Q6P1W5 598 aa17.56■□□□□ 0.4
SDC1-205ENST00000447124 FAHD2BQ6P2I3 314 aaPredicted RBP17.56■□□□□ 0.4
SDC1-205ENST00000447124 HIST2H3AQ71DI3 136 aa17.56■□□□□ 0.4
SDC1-205ENST00000447124 PTP4A1Q93096 173 aa17.56■□□□□ 0.4
SDC1-205ENST00000447124 FAHD2AQ96GK7 314 aa17.56■□□□□ 0.4
SDC1-205ENST00000447124 SAMD8Q96LT4 415 aa17.56■□□□□ 0.4
SDC1-205ENST00000447124 NMNAT3Q96T66 252 aa17.56■□□□□ 0.4
SDC1-205ENST00000447124 EGLN1Q9GZT9 426 aa17.56■□□□□ 0.4
SDC1-205ENST00000447124 METTL17Q9H7H0 456 aaPredicted RBP17.56■□□□□ 0.4
SDC1-205ENST00000447124 CGGBP1Q9UFW8 167 aaPredicted RBP17.56■□□□□ 0.4
SDC1-205ENST00000447124 METRNQ9UJH8 293 aa17.56■□□□□ 0.4
SDC1-205ENST00000447124 LHFPL6Q9Y693 200 aa17.56■□□□□ 0.4
SDC1-205ENST00000447124 ANK2Q01484 3957 aa17.56■□□□□ 0.4
SDC1-205ENST00000447124 TRAV20A0A0B4J274 112 aa17.55■□□□□ 0.4
SDC1-205ENST00000447124 ARPC3O15145 178 aa17.55■□□□□ 0.4
SDC1-205ENST00000447124 HIST1H1CP16403 213 aaKnown RBP17.55■□□□□ 0.4
SDC1-205ENST00000447124 TUBG1P23258 451 aa17.55■□□□□ 0.4
SDC1-205ENST00000447124 RRM2P31350 389 aa17.55■□□□□ 0.4
SDC1-205ENST00000447124 GSSP48637 474 aa17.55■□□□□ 0.4
SDC1-205ENST00000447124 CENPAP49450 140 aa17.55■□□□□ 0.4
SDC1-205ENST00000447124 TNFAIP6P98066 277 aaPredicted RBP17.55■□□□□ 0.4
SDC1-205ENST00000447124 LIPNQ5VXI9 398 aa17.55■□□□□ 0.4
SDC1-205ENST00000447124 DEFB107AQ8IZN7 70 aa17.55■□□□□ 0.4
SDC1-205ENST00000447124 NPEPL1Q8NDH3 523 aa17.55■□□□□ 0.4
SDC1-205ENST00000447124 OR4K13Q8NH42 304 aa17.55■□□□□ 0.4
SDC1-205ENST00000447124 TIMD4Q96H15 378 aa17.55■□□□□ 0.4
SDC1-205ENST00000447124 DIRC2Q96SL1 478 aa17.55■□□□□ 0.4
SDC1-205ENST00000447124 IL1RAPQ9NPH3 570 aa17.55■□□□□ 0.4
SDC1-205ENST00000447124 KRCC1Q9NPI7 259 aaPredicted RBP17.55■□□□□ 0.4
SDC1-205ENST00000447124 TUBG2Q9NRH3 451 aa17.55■□□□□ 0.4
SDC1-205ENST00000447124 TCF21O43680 179 aa17.54■□□□□ 0.4
SDC1-205ENST00000447124 OR10H3O60404 316 aa17.54■□□□□ 0.4
SDC1-205ENST00000447124 FABP3P05413 133 aa17.54■□□□□ 0.4
SDC1-205ENST00000447124 ANPEPP15144 967 aa17.54■□□□□ 0.4
SDC1-205ENST00000447124 GSTM3P21266 225 aa17.54■□□□□ 0.4
SDC1-205ENST00000447124 FPR3P25089 353 aa17.54■□□□□ 0.4
SDC1-205ENST00000447124 CRABP1P29762 137 aa17.54■□□□□ 0.4
SDC1-205ENST00000447124 LEG1Q6P5S2 330 aa17.54■□□□□ 0.4
SDC1-205ENST00000447124 CORO6Q6QEF8 472 aa17.54■□□□□ 0.4
SDC1-205ENST00000447124 ZNF771Q7L3S4 317 aaPredicted RBP17.54■□□□□ 0.4
SDC1-205ENST00000447124 ZSCAN2Q7Z7L9 614 aaPredicted RBP17.54■□□□□ 0.4
SDC1-205ENST00000447124 FANK1Q8TC84 345 aa17.54■□□□□ 0.4
SDC1-205ENST00000447124 MCUR1Q96AQ8 359 aa17.54■□□□□ 0.4
SDC1-205ENST00000447124 DYSFO75923 2080 aa17.53■□□□□ 0.4
SDC1-205ENST00000447124 SLC6A6P31641 620 aa17.53■□□□□ 0.4
SDC1-205ENST00000447124 HMGA2P52926 109 aa17.53■□□□□ 0.4
SDC1-205ENST00000447124 HLXQ14774 488 aaPredicted RBP17.53■□□□□ 0.4
SDC1-205ENST00000447124 PGBD2Q6P3X8 592 aa17.53■□□□□ 0.4
SDC1-205ENST00000447124 ZDHHC21Q8IVQ6 265 aa17.53■□□□□ 0.4
SDC1-205ENST00000447124 OR2Z1Q8NG97 314 aa17.53■□□□□ 0.4
SDC1-205ENST00000447124 GNPDA2Q8TDQ7 276 aa17.53■□□□□ 0.4
SDC1-205ENST00000447124 RAB39BQ96DA2 213 aa17.53■□□□□ 0.4
SDC1-205ENST00000447124 DCLRE1CQ96SD1 692 aaKnown RBP17.53■□□□□ 0.4
SDC1-205ENST00000447124 IFT27Q9BW83 186 aa17.53■□□□□ 0.4
SDC1-205ENST00000447124 TMPRSS13Q9BYE2 586 aa17.53■□□□□ 0.4
SDC1-205ENST00000447124 NPTNQ9Y639 398 aa17.53■□□□□ 0.4
SDC1-205ENST00000447124 OR6C68A6NDL8 312 aa17.52■□□□□ 0.4
SDC1-205ENST00000447124 VENTXO95231 258 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms