RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 TMEM235A6NFC5 223 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 LMO7DNF2Z398 122 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 ZNF28P17035 718 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 MPGP29372 298 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 PTGS2P35354 604 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 OR1D5P58170 312 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 FMODQ06828 376 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 FGL1Q08830 312 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 MOGAT2Q3SYC2 334 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 TMEM244Q5VVB8 128 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 PAPD4Q6PIY7 484 aaKnown RBP16.76■□□□□ 0.27
CPSF3-201ENST00000238112 ZNF546Q86UE3 836 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 HIST2H2ABQ8IUE6 130 aaPredicted RBP16.76■□□□□ 0.27
CPSF3-201ENST00000238112 NKD1Q969G9 470 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 PTX4Q96A99 478 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 MYOZ1Q9NP98 299 aaPredicted RBP16.76■□□□□ 0.27
CPSF3-201ENST00000238112 KLK13Q9UKR3 277 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 TRAV14DV4A0A0A6YYC5 116 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 METTL21EPA6NDL7 271 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 DISC1C4P0D8 188 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 FTCDNL1E5RQL4 147 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 CD74P04233 296 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 CSN2P05814 226 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 UBCP0CG48 685 aaKnown RBP16.75■□□□□ 0.27
CPSF3-201ENST00000238112 DAP3P51398 398 aaKnown RBP16.75■□□□□ 0.27
CPSF3-201ENST00000238112 CAPZA1P52907 286 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 HNRNPKP61978 463 aaKnown RBP eCLIP16.75■□□□□ 0.27
CPSF3-201ENST00000238112 NR0B2Q15466 257 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 C1orf100Q5SVJ3 147 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 LIN54Q6MZP7 749 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 ACBD4Q8NC06 268 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 OR1S1Q8NH92 325 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 ASB10Q8WXI3 467 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 FOXRED1Q96CU9 486 aaPredicted RBP16.75■□□□□ 0.27
CPSF3-201ENST00000238112 CENPMQ9NSP4 180 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 LOC390937A0A1W2PQ73 354 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 TSPAN4O14817 238 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 H2BFMP0C1H6 154 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 ZNF735P0CB33 412 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 CD34P28906 385 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 DHRS2Q13268 280 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 TDGQ13569 410 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 OR7A5Q15622 319 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 LANCL3Q6ZV70 420 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 MISPQ8IVT2 679 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 ST7LQ8TDW4 575 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 FBXO4Q9UKT5 387 aa16.75■□□□□ 0.27
CPSF3-201ENST00000238112 NOP16Q9Y3C1 178 aaKnown RBP16.75■□□□□ 0.27
CPSF3-201ENST00000238112 TEX46H3BTG2 121 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 P2RY10O00398 339 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 BET1O15155 118 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 LMX1BO60663 402 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 HLA-AP01891 365 aaKnown RBP16.74■□□□□ 0.27
CPSF3-201ENST00000238112 FGF2P09038 288 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 NAGAP17050 411 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 RAB6AP20340 208 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 MEF2DQ14814 521 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 RAB12Q6IQ22 244 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 LPCAT3Q6P1A2 487 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 TMEM81Q6P7N7 255 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 OGFOD3Q6PK18 319 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 BVESQ8NE79 360 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 OR4D6Q8NGJ1 314 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 OR5M8Q8NGP6 311 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 SLC6A7Q99884 636 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 PDCD10Q9BUL8 212 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 EDEM2Q9BV94 578 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 ZNF230Q9UIE0 474 aaPredicted RBP16.74■□□□□ 0.27
CPSF3-201ENST00000238112 GDF2Q9UK05 429 aaPredicted RBP16.74■□□□□ 0.27
CPSF3-201ENST00000238112 A0A1B0GX78 115 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 MS4A18H0YCH9 400 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 LGALS8O00214 317 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 EIF1AYO14602 144 aaKnown RBP16.74■□□□□ 0.27
CPSF3-201ENST00000238112 SMAD9O15198 467 aaKnown RBP16.74■□□□□ 0.27
CPSF3-201ENST00000238112 RLN2P04090 185 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 UBBP0CG47 229 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 FOLR1P15328 257 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 MGMTP16455 207 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 RPS27AP62979 156 aaKnown RBP16.74■□□□□ 0.27
CPSF3-201ENST00000238112 UBA52P62987 128 aaKnown RBP16.74■□□□□ 0.27
CPSF3-201ENST00000238112 BTN1A1Q13410 526 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 NKPD1Q17RQ9 610 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 MS4A18Q3C1V0 323 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 CDNFQ49AH0 187 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 DEGS2Q6QHC5 323 aa16.74■□□□□ 0.27
CPSF3-201ENST00000238112 HSD17B13Q7Z5P4 300 aaPredicted RBP16.74■□□□□ 0.27
CPSF3-201ENST00000238112 PCDH15Q96QU1 1955 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 CPAMD8Q8IZJ3 1885 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 A0A0D9SG52 128 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 A0A1B0GW55 424 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 OR5H14A6NHG9 310 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 METTL12A8MUP2 240 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 DUX4L2P0CJ85 424 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 DUX4L3P0CJ86 424 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 DUX4L4P0CJ87 422 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 DUX4L5P0CJ88 424 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 DUX4L6P0CJ89 424 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 DUX4L7P0CJ90 424 aa16.73■□□□□ 0.27
CPSF3-201ENST00000238112 ATF4P18848 351 aaPredicted RBP16.73■□□□□ 0.27
CPSF3-201ENST00000238112 POU3F1Q03052 451 aaPredicted RBP16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms