RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 FAM110BQ8TC76 370 aa4.14□□□□□ -1.75
VPS29-212ENST00000621131 SAP25Q8TEE9 199 aa4.14□□□□□ -1.75
VPS29-212ENST00000621131 METTL21AQ8WXB1 218 aa4.14□□□□□ -1.75
VPS29-212ENST00000621131 HDAC2Q92769 488 aaKnown RBP4.14□□□□□ -1.75
VPS29-212ENST00000621131 SLC38A4Q969I6 547 aa4.14□□□□□ -1.75
VPS29-212ENST00000621131 PRRC1Q96M27 445 aa4.14□□□□□ -1.75
VPS29-212ENST00000621131 TRIM4Q9C037 500 aa4.14□□□□□ -1.75
VPS29-212ENST00000621131 HOXD1Q9GZZ0 328 aa4.14□□□□□ -1.75
VPS29-212ENST00000621131 ADNPQ9H2P0 1102 aa4.14□□□□□ -1.75
VPS29-212ENST00000621131 ANKRD19PQ9H560 264 aa4.14□□□□□ -1.75
VPS29-212ENST00000621131 CXorf21Q9HAI6 301 aa4.14□□□□□ -1.75
VPS29-212ENST00000621131 NTN4Q9HB63 628 aa4.14□□□□□ -1.75
VPS29-212ENST00000621131 FOLH1BQ9HBA9 442 aa4.14□□□□□ -1.75
VPS29-212ENST00000621131 CCNB1IP1Q9NPC3 277 aa4.14□□□□□ -1.75
VPS29-212ENST00000621131 PNO1Q9NRX1 252 aaKnown RBP4.14□□□□□ -1.75
VPS29-212ENST00000621131 FGF21Q9NSA1 209 aa4.14□□□□□ -1.75
VPS29-212ENST00000621131 IMPAD1Q9NX62 359 aa4.14□□□□□ -1.75
VPS29-212ENST00000621131 MAT2BQ9NZL9 334 aa4.14□□□□□ -1.75
VPS29-212ENST00000621131 RPS6KB2Q9UBS0 482 aa4.14□□□□□ -1.75
VPS29-212ENST00000621131 C19orf25Q9UFG5 118 aaPredicted RBP4.14□□□□□ -1.75
VPS29-212ENST00000621131 MGAT4BQ9UQ53 548 aa4.14□□□□□ -1.75
VPS29-212ENST00000621131 ZNF443Q9Y2A4 671 aaPredicted RBP4.14□□□□□ -1.75
VPS29-212ENST00000621131 TPRKBQ9Y3C4 175 aa4.14□□□□□ -1.75
VPS29-212ENST00000621131 CLCA3PQ9Y6N3 262 aa4.14□□□□□ -1.75
VPS29-212ENST00000621131 R4GN57 208 aa4.14□□□□□ -1.75
VPS29-212ENST00000621131 POLQO75417 2590 aa4.14□□□□□ -1.75
VPS29-212ENST00000621131 DNHD1Q96M86 4753 aa4.14□□□□□ -1.75
VPS29-212ENST00000621131 MDC1Q14676 2089 aaKnown RBP4.14□□□□□ -1.75
VPS29-212ENST00000621131 PTPRQQ9UMZ3 2332 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 NUP210LQ5VU65 1888 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 PI4KAP42356 2102 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 CENPEQ02224 2701 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 LOC100130705A0A1B0GUX0 176 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 SMIM31A0A1B0GVY4 71 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 CCDC160A6NGH7 325 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 SNTNA6NMZ2 147 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 C17orf105B2RV13 164 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 C9J4A7 227 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 F5H0A9 414 aaPredicted RBP4.13□□□□□ -1.75
VPS29-212ENST00000621131 H3BNH8 94 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 M0R3G1 203 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 POLR1CO15160 346 aaPredicted RBP4.13□□□□□ -1.75
VPS29-212ENST00000621131 B4GAT1O43505 415 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 KIAA0513O60268 411 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 OR10H3O60404 316 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 NME6O75414 186 aaPredicted RBP4.13□□□□□ -1.75
VPS29-212ENST00000621131 SCRG1O75711 98 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 DFFBO76075 338 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 DIRAS1O95057 198 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 LDOC1O95751 146 aaPredicted RBP4.13□□□□□ -1.75
VPS29-212ENST00000621131 LGI1O95970 557 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 GP1BAP07359 652 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 HEXBP07686 556 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 GUSBP08236 651 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 AZU1P20160 251 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 IL12BP29460 328 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 LCN1P31025 176 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 SLC6A6P31641 620 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 GABRA3P34903 492 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 RORAP35398 523 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 RPL5P46777 297 aaKnown RBP4.13□□□□□ -1.75
VPS29-212ENST00000621131 YAP1P46937 504 aaKnown RBP4.13□□□□□ -1.75
VPS29-212ENST00000621131 GABRA4P48169 554 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 RFX3P48380 749 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 PDX1P52945 283 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 IST1P53990 364 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 HERV-K104P61576 105 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 ADARB1P78563 741 aaKnown RBP4.13□□□□□ -1.75
VPS29-212ENST00000621131 CCL7P80098 99 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 NPRL3Q12980 569 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 C16orf72Q14CZ0 275 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 EXOSC7Q15024 291 aaKnown RBP4.13□□□□□ -1.75
VPS29-212ENST00000621131 TRAM2Q15035 370 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 DUSP5Q16690 384 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 TRMT12Q53H54 448 aaKnown RBP4.13□□□□□ -1.75
VPS29-212ENST00000621131 LCE3EQ5T5B0 92 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 FHL5Q5TD97 284 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 KDM4DQ6B0I6 523 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 ZNF343Q6P1L6 599 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 GUSBP11Q6P575 273 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 FAHD1Q6P587 224 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 FRRS1Q6ZNA5 592 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 Q6ZRP5 223 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 ZNF550Q7Z398 422 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 LRRTM1Q86UE6 522 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 OR52J3Q8NH60 311 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 OR1L3Q8NH93 324 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 MOSPD2Q8NHP6 518 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 PIGXQ8TBF5 258 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 GTF3AQ92664 365 aaKnown RBP4.13□□□□□ -1.75
VPS29-212ENST00000621131 UCN3Q969E3 161 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 C16orf58Q96GQ5 468 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 CNDP2Q96KP4 475 aaKnown RBP4.13□□□□□ -1.75
VPS29-212ENST00000621131 C7orf34Q96L11 122 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 FOXN4Q96NZ1 517 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 SDF2Q99470 211 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 MCHR1Q99705 422 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 ZNF559Q9BR84 538 aa4.13□□□□□ -1.75
VPS29-212ENST00000621131 LMF2Q9BU23 707 aaKnown RBP4.13□□□□□ -1.75
VPS29-212ENST00000621131 UCK2Q9BZX2 261 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms