RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 CD47Q08722 323 aa16.95■□□□□ 0.3
SQSTM1-215ENST00000514093 PAGE3Q5JUK9 113 aa16.95■□□□□ 0.3
SQSTM1-215ENST00000514093 ARMC4Q5T2S8 1044 aa16.95■□□□□ 0.3
SQSTM1-215ENST00000514093 FAM205BPQ63HN1 556 aa16.95■□□□□ 0.3
SQSTM1-215ENST00000514093 SLC25A47Q6Q0C1 308 aa16.95■□□□□ 0.3
SQSTM1-215ENST00000514093 CLDN22Q8N7P3 220 aa16.95■□□□□ 0.3
SQSTM1-215ENST00000514093 ANKRD42Q8N9B4 389 aa16.95■□□□□ 0.3
SQSTM1-215ENST00000514093 EVA1AQ9H8M9 152 aa16.95■□□□□ 0.3
SQSTM1-215ENST00000514093 TCF7L1Q9HCS4 588 aa16.95■□□□□ 0.3
SQSTM1-215ENST00000514093 INIPQ9NRY2 104 aa16.95■□□□□ 0.3
SQSTM1-215ENST00000514093 ASH2LQ9UBL3 628 aa16.95■□□□□ 0.3
SQSTM1-215ENST00000514093 MIOXQ9UGB7 285 aa16.95■□□□□ 0.3
SQSTM1-215ENST00000514093 TIMM10BQ9Y5J6 103 aa16.95■□□□□ 0.3
SQSTM1-215ENST00000514093 KMT2CQ8NEZ4 4911 aaKnown RBP16.94■□□□□ 0.3
SQSTM1-215ENST00000514093 SNNO75324 88 aaPredicted RBP16.94■□□□□ 0.3
SQSTM1-215ENST00000514093 PRB2P02812 416 aaPredicted RBP16.94■□□□□ 0.3
SQSTM1-215ENST00000514093 FUT1P19526 365 aa16.94■□□□□ 0.3
SQSTM1-215ENST00000514093 GSTM3P21266 225 aa16.94■□□□□ 0.3
SQSTM1-215ENST00000514093 DAP3P51398 398 aaKnown RBP16.94■□□□□ 0.3
SQSTM1-215ENST00000514093 PDCD1Q15116 288 aa16.94■□□□□ 0.3
SQSTM1-215ENST00000514093 FAM201AQ5SY85 155 aa16.94■□□□□ 0.3
SQSTM1-215ENST00000514093 GPR157Q5UAW9 335 aa16.94■□□□□ 0.3
SQSTM1-215ENST00000514093 ZNF620Q6ZNG0 422 aa16.94■□□□□ 0.3
SQSTM1-215ENST00000514093 FITM2Q8N6M3 262 aa16.94■□□□□ 0.3
SQSTM1-215ENST00000514093 ATG16L2Q8NAA4 619 aa16.94■□□□□ 0.3
SQSTM1-215ENST00000514093 PFN4Q8NHR9 129 aa16.94■□□□□ 0.3
SQSTM1-215ENST00000514093 NEIL1Q96FI4 390 aaPredicted RBP16.94■□□□□ 0.3
SQSTM1-215ENST00000514093 PRSS27Q9BQR3 290 aa16.94■□□□□ 0.3
SQSTM1-215ENST00000514093 TMEM246Q9BRR3 403 aa16.94■□□□□ 0.3
SQSTM1-215ENST00000514093 PCGF1Q9BSM1 259 aa16.94■□□□□ 0.3
SQSTM1-215ENST00000514093 ZNF426Q9BUY5 554 aa16.94■□□□□ 0.3
SQSTM1-215ENST00000514093 CDADC1Q9BWV3 514 aa16.94■□□□□ 0.3
SQSTM1-215ENST00000514093 CENPHQ9H3R5 247 aa16.94■□□□□ 0.3
SQSTM1-215ENST00000514093 TRAPPC13A5PLN9 417 aa16.93■□□□□ 0.3
SQSTM1-215ENST00000514093 M0QX08 132 aa16.93■□□□□ 0.3
SQSTM1-215ENST00000514093 SURF4O15260 269 aa16.93■□□□□ 0.3
SQSTM1-215ENST00000514093 CLPXO76031 633 aa16.93■□□□□ 0.3
SQSTM1-215ENST00000514093 CST2P09228 141 aa16.93■□□□□ 0.3
SQSTM1-215ENST00000514093 KITLGP21583 273 aa16.93■□□□□ 0.3
SQSTM1-215ENST00000514093 PROK1P58294 105 aa16.93■□□□□ 0.3
SQSTM1-215ENST00000514093 LAPTM4AQ15012 233 aa16.93■□□□□ 0.3
SQSTM1-215ENST00000514093 ARL9Q6T311 187 aa16.93■□□□□ 0.3
SQSTM1-215ENST00000514093 HDDC2Q7Z4H3 204 aa16.93■□□□□ 0.3
SQSTM1-215ENST00000514093 FUNDC1Q8IVP5 155 aa16.93■□□□□ 0.3
SQSTM1-215ENST00000514093 OR5AS1Q8N127 324 aa16.93■□□□□ 0.3
SQSTM1-215ENST00000514093 AENQ8WTP8 325 aaKnown RBP16.93■□□□□ 0.3
SQSTM1-215ENST00000514093 PLEKHA8Q96JA3 519 aa16.93■□□□□ 0.3
SQSTM1-215ENST00000514093 SMURF2Q9HAU4 748 aa16.93■□□□□ 0.3
SQSTM1-215ENST00000514093 STARD10Q9Y365 291 aa16.93■□□□□ 0.3
SQSTM1-215ENST00000514093 G3V4G9 280 aa16.92■□□□□ 0.3
SQSTM1-215ENST00000514093 ERLIN1O75477 346 aa16.92■□□□□ 0.3
SQSTM1-215ENST00000514093 GPX2P18283 190 aa16.92■□□□□ 0.3
SQSTM1-215ENST00000514093 PPIBP23284 216 aaKnown RBP16.92■□□□□ 0.3
SQSTM1-215ENST00000514093 PITPNBP48739 271 aa16.92■□□□□ 0.3
SQSTM1-215ENST00000514093 WDR4P57081 412 aaKnown RBP16.92■□□□□ 0.3
SQSTM1-215ENST00000514093 PCBP3P57721 371 aaKnown RBP16.92■□□□□ 0.3
SQSTM1-215ENST00000514093 TOP3AQ13472 1001 aaPredicted RBP16.92■□□□□ 0.3
SQSTM1-215ENST00000514093 TTMPQ5BVD1 217 aa16.92■□□□□ 0.3
SQSTM1-215ENST00000514093 TMEM86BQ8N661 226 aa16.92■□□□□ 0.3
SQSTM1-215ENST00000514093 OR10AD1Q8NGE0 317 aa16.92■□□□□ 0.3
SQSTM1-215ENST00000514093 OR8B3Q8NGG8 313 aa16.92■□□□□ 0.3
SQSTM1-215ENST00000514093 MPP4Q96JB8 637 aa16.92■□□□□ 0.3
SQSTM1-215ENST00000514093 FAM71F1Q96KD3 344 aaPredicted RBP16.92■□□□□ 0.3
SQSTM1-215ENST00000514093 OR8B2Q96RD0 313 aa16.92■□□□□ 0.3
SQSTM1-215ENST00000514093 C20orf141Q9NUB4 165 aa16.92■□□□□ 0.3
SQSTM1-215ENST00000514093 TRBV5-3A0A0A0MS03 114 aa16.91■□□□□ 0.3
SQSTM1-215ENST00000514093 OR7A10O76100 309 aa16.91■□□□□ 0.3
SQSTM1-215ENST00000514093 SCG5P05408 212 aa16.91■□□□□ 0.3
SQSTM1-215ENST00000514093 SFTPBP07988 381 aa16.91■□□□□ 0.3
SQSTM1-215ENST00000514093 PCBD1P61457 104 aa16.91■□□□□ 0.3
SQSTM1-215ENST00000514093 ENDOGQ14249 297 aaKnown RBP16.91■□□□□ 0.3
SQSTM1-215ENST00000514093 C1orf94Q6P1W5 598 aa16.91■□□□□ 0.3
SQSTM1-215ENST00000514093 LYPD2Q6UXB3 125 aa16.91■□□□□ 0.3
SQSTM1-215ENST00000514093 PTOV1Q86YD1 416 aa16.91■□□□□ 0.3
SQSTM1-215ENST00000514093 NPEPL1Q8NDH3 523 aa16.91■□□□□ 0.3
SQSTM1-215ENST00000514093 HAVCR1Q96D42 359 aa16.91■□□□□ 0.3
SQSTM1-215ENST00000514093 TBCCD1Q9NVR7 557 aa16.91■□□□□ 0.3
SQSTM1-215ENST00000514093 CLN8Q9UBY8 286 aa16.91■□□□□ 0.3
SQSTM1-215ENST00000514093 POMT1Q9Y6A1 747 aa16.91■□□□□ 0.3
SQSTM1-215ENST00000514093 DOCK11Q5JSL3 2073 aa16.91■□□□□ 0.3
SQSTM1-215ENST00000514093 A0A1W2PPL8 197 aa16.9■□□□□ 0.3
SQSTM1-215ENST00000514093 EVPLLA8MZ36 301 aa16.9■□□□□ 0.3
SQSTM1-215ENST00000514093 C22orf46C9J442 243 aa16.9■□□□□ 0.3
SQSTM1-215ENST00000514093 H0YL77 283 aa16.9■□□□□ 0.3
SQSTM1-215ENST00000514093 GPR137BO60478 399 aa16.9■□□□□ 0.3
SQSTM1-215ENST00000514093 MT-ND1P03886 318 aa16.9■□□□□ 0.3
SQSTM1-215ENST00000514093 BLOC1S3Q6QNY0 202 aa16.9■□□□□ 0.3
SQSTM1-215ENST00000514093 Q6ZPA2 131 aa16.9■□□□□ 0.3
SQSTM1-215ENST00000514093 NKAIN4Q8IVV8 208 aa16.9■□□□□ 0.3
SQSTM1-215ENST00000514093 SSMEM1Q8WWF3 244 aa16.9■□□□□ 0.3
SQSTM1-215ENST00000514093 DYRK2Q92630 601 aa16.9■□□□□ 0.3
SQSTM1-215ENST00000514093 SPDL1Q96EA4 605 aa16.9■□□□□ 0.3
SQSTM1-215ENST00000514093 MEGF10Q96KG7 1140 aa16.9■□□□□ 0.3
SQSTM1-215ENST00000514093 CCDC167Q9P0B6 97 aa16.9■□□□□ 0.3
SQSTM1-215ENST00000514093 STX18Q9P2W9 335 aaKnown RBP16.9■□□□□ 0.3
SQSTM1-215ENST00000514093 NDRG4Q9ULP0 352 aaKnown RBP16.9■□□□□ 0.3
SQSTM1-215ENST00000514093 IGHV4-59P01825 116 aa16.89■□□□□ 0.29
SQSTM1-215ENST00000514093 CD247P20963 164 aa16.89■□□□□ 0.29
SQSTM1-215ENST00000514093 CPT2P23786 658 aa16.89■□□□□ 0.29
SQSTM1-215ENST00000514093 BPIFB3P59826 476 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms