RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 DCBLD2Q96PD2 775 aa16.3■□□□□ 0.2
USP39-201ENST00000323701 SF3B5Q9BWJ5 86 aaKnown RBP16.3■□□□□ 0.2
USP39-201ENST00000323701 CRNNQ9UBG3 495 aaPredicted RBP16.3■□□□□ 0.2
USP39-201ENST00000323701 TNRC6AQ8NDV7 1962 aaKnown RBP16.29■□□□□ 0.2
USP39-201ENST00000323701 ZNF879B4DU55 563 aa16.29■□□□□ 0.2
USP39-201ENST00000323701 TLX3O43711 291 aaPredicted RBP16.29■□□□□ 0.2
USP39-201ENST00000323701 ANOS1P23352 680 aa16.29■□□□□ 0.2
USP39-201ENST00000323701 SOX2P48431 317 aa16.29■□□□□ 0.2
USP39-201ENST00000323701 FOXC1Q12948 553 aa16.29■□□□□ 0.2
USP39-201ENST00000323701 YIF1BQ5BJH7 314 aa16.29■□□□□ 0.2
USP39-201ENST00000323701 C1QTNF12Q5T7M4 302 aa16.29■□□□□ 0.2
USP39-201ENST00000323701 KCTD18Q6PI47 426 aaPredicted RBP16.29■□□□□ 0.2
USP39-201ENST00000323701 TEX19Q8NA77 164 aa16.29■□□□□ 0.2
USP39-201ENST00000323701 RNF133Q8WVZ7 376 aa16.29■□□□□ 0.2
USP39-201ENST00000323701 SDHCQ99643 169 aaPredicted RBP16.29■□□□□ 0.2
USP39-201ENST00000323701 SLC25A18Q9H1K4 315 aa16.29■□□□□ 0.2
USP39-201ENST00000323701 CENPMQ9NSP4 180 aa16.29■□□□□ 0.2
USP39-201ENST00000323701 COMMD3Q9UBI1 195 aa16.29■□□□□ 0.2
USP39-201ENST00000323701 ASH2LQ9UBL3 628 aa16.29■□□□□ 0.2
USP39-201ENST00000323701 GTF2A1LQ9UNN4 478 aa16.29■□□□□ 0.2
USP39-201ENST00000323701 ZNF891A8MT65 544 aaPredicted RBP16.28■□□□□ 0.2
USP39-201ENST00000323701 SLC2A2P11168 524 aaPredicted RBP16.28■□□□□ 0.2
USP39-201ENST00000323701 THBS2P35442 1172 aa16.28■□□□□ 0.2
USP39-201ENST00000323701 FDX2Q6P4F2 183 aa16.28■□□□□ 0.2
USP39-201ENST00000323701 IGFL2Q6UWQ7 119 aa16.28■□□□□ 0.2
USP39-201ENST00000323701 FCRLAQ7L513 359 aa16.28■□□□□ 0.2
USP39-201ENST00000323701 OR10H5Q8NGA6 315 aa16.28■□□□□ 0.2
USP39-201ENST00000323701 DERL3Q96Q80 235 aa16.28■□□□□ 0.2
USP39-201ENST00000323701 GFI1Q99684 422 aa16.28■□□□□ 0.2
USP39-201ENST00000323701 POLE4Q9NR33 117 aa16.28■□□□□ 0.2
USP39-201ENST00000323701 GDF2Q9UK05 429 aaPredicted RBP16.28■□□□□ 0.2
USP39-201ENST00000323701 EMC9Q9Y3B6 208 aa16.28■□□□□ 0.2
USP39-201ENST00000323701 V9GYH0 126 aa16.28■□□□□ 0.2
USP39-201ENST00000323701 ACACAQ13085 2346 aa16.28■□□□□ 0.2
USP39-201ENST00000323701 DSPP15924 2871 aaKnown RBP16.28■□□□□ 0.2
USP39-201ENST00000323701 FREM1Q5H8C1 2179 aa16.28■□□□□ 0.2
USP39-201ENST00000323701 RER1O15258 196 aa16.28■□□□□ 0.2
USP39-201ENST00000323701 GFRA3O60609 400 aa16.28■□□□□ 0.2
USP39-201ENST00000323701 SERPINA3P01011 423 aa16.28■□□□□ 0.2
USP39-201ENST00000323701 ETV6P41212 452 aa16.28■□□□□ 0.2
USP39-201ENST00000323701 RIDAP52758 137 aaKnown RBP16.28■□□□□ 0.2
USP39-201ENST00000323701 PPP5CP53041 499 aa16.28■□□□□ 0.2
USP39-201ENST00000323701 CD300CQ08708 224 aa16.28■□□□□ 0.2
USP39-201ENST00000323701 LINGO2Q7L985 606 aa16.28■□□□□ 0.2
USP39-201ENST00000323701 CPNE4Q96A23 557 aaPredicted RBP16.28■□□□□ 0.2
USP39-201ENST00000323701 SLAMF6Q96DU3 332 aa16.28■□□□□ 0.2
USP39-201ENST00000323701 SLC30A2Q9BRI3 323 aa16.28■□□□□ 0.2
USP39-201ENST00000323701 CMAHPQ9Y471 501 aa16.28■□□□□ 0.2
USP39-201ENST00000323701 KLK10O43240 276 aa16.27■□□□□ 0.2
USP39-201ENST00000323701 ZNHIT1O43257 154 aa16.27■□□□□ 0.2
USP39-201ENST00000323701 CYTIPO60759 359 aa16.27■□□□□ 0.2
USP39-201ENST00000323701 CD40LGP29965 261 aa16.27■□□□□ 0.2
USP39-201ENST00000323701 RASGEF1BQ0VAM2 473 aa16.27■□□□□ 0.2
USP39-201ENST00000323701 C10orf128Q5T292 105 aa16.27■□□□□ 0.2
USP39-201ENST00000323701 IDNKQ5T6J7 187 aa16.27■□□□□ 0.2
USP39-201ENST00000323701 CATSPERDQ86XM0 798 aa16.27■□□□□ 0.2
USP39-201ENST00000323701 C20orf196Q8IYI0 205 aa16.27■□□□□ 0.2
USP39-201ENST00000323701 ZNF676Q8N7Q3 588 aa16.27■□□□□ 0.2
USP39-201ENST00000323701 NABP1Q96AH0 204 aa16.27■□□□□ 0.2
USP39-201ENST00000323701 ZNF416Q9BWM5 594 aa16.27■□□□□ 0.2
USP39-201ENST00000323701 G6PC2Q9NQR9 355 aa16.27■□□□□ 0.2
USP39-201ENST00000323701 AK6Q9Y3D8 172 aaKnown RBP16.27■□□□□ 0.2
USP39-201ENST00000323701 CACNA1GO43497 2377 aa16.27■□□□□ 0.2
USP39-201ENST00000323701 A0A0B4J203 849 aa16.27■□□□□ 0.19
USP39-201ENST00000323701 TRBV5-5A0A0J9YX44 114 aa16.27■□□□□ 0.19
USP39-201ENST00000323701 LINC01387J3KSC0 135 aa16.27■□□□□ 0.19
USP39-201ENST00000323701 HPGDSO60760 199 aa16.27■□□□□ 0.19
USP39-201ENST00000323701 GATBO75879 557 aaKnown RBP16.27■□□□□ 0.19
USP39-201ENST00000323701 MYL9P24844 172 aa16.27■□□□□ 0.19
USP39-201ENST00000323701 ZNF133P52736 654 aaPredicted RBP16.27■□□□□ 0.19
USP39-201ENST00000323701 SLC10A1Q14973 349 aa16.27■□□□□ 0.19
USP39-201ENST00000323701 SGCAQ16586 387 aa16.27■□□□□ 0.19
USP39-201ENST00000323701 SFXN4Q6P4A7 337 aa16.27■□□□□ 0.19
USP39-201ENST00000323701 SLC22A16Q86VW1 577 aa16.27■□□□□ 0.19
USP39-201ENST00000323701 FNDC9Q8TBE3 224 aa16.27■□□□□ 0.19
USP39-201ENST00000323701 RBM24Q9BX46 236 aaKnown RBP16.27■□□□□ 0.19
USP39-201ENST00000323701 SPRR3Q9UBC9 169 aa16.27■□□□□ 0.19
USP39-201ENST00000323701 ITGB1BP2Q9UKP3 347 aa16.27■□□□□ 0.19
USP39-201ENST00000323701 TRAV1-2A0A0B4J238 106 aa16.26■□□□□ 0.19
USP39-201ENST00000323701 TAF4O00268 1085 aa16.26■□□□□ 0.19
USP39-201ENST00000323701 PAHP00439 452 aa16.26■□□□□ 0.19
USP39-201ENST00000323701 SRMP19623 302 aa16.26■□□□□ 0.19
USP39-201ENST00000323701 MRPL28Q13084 256 aaKnown RBP16.26■□□□□ 0.19
USP39-201ENST00000323701 ZNF79Q15937 498 aa16.26■□□□□ 0.19
USP39-201ENST00000323701 KCNMB1Q16558 191 aa16.26■□□□□ 0.19
USP39-201ENST00000323701 Q499Y3 187 aa16.26■□□□□ 0.19
USP39-201ENST00000323701 HSD17B12Q53GQ0 312 aa16.26■□□□□ 0.19
USP39-201ENST00000323701 FAM109AQ8N4B1 249 aa16.26■□□□□ 0.19
USP39-201ENST00000323701 TMEM178AQ8NBL3 297 aa16.26■□□□□ 0.19
USP39-201ENST00000323701 WDFY2Q96P53 400 aa16.26■□□□□ 0.19
USP39-201ENST00000323701 ACKR4Q9NPB9 350 aa16.26■□□□□ 0.19
USP39-201ENST00000323701 BRD7Q9NPI1 651 aa16.26■□□□□ 0.19
USP39-201ENST00000323701 PNRC2Q9NPJ4 139 aaKnown RBP16.26■□□□□ 0.19
USP39-201ENST00000323701 TMEM212A6NML5 194 aa16.26■□□□□ 0.19
USP39-201ENST00000323701 DHHO43323 396 aa16.26■□□□□ 0.19
USP39-201ENST00000323701 CEACAM4O75871 244 aa16.26■□□□□ 0.19
USP39-201ENST00000323701 SPANXN2Q5MJ10 180 aa16.26■□□□□ 0.19
USP39-201ENST00000323701 ITPKCQ96DU7 683 aa16.26■□□□□ 0.19
USP39-201ENST00000323701 CEP19Q96LK0 163 aa16.26■□□□□ 0.19
USP39-201ENST00000323701 ALKBH3Q96Q83 286 aaPredicted RBP16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms