RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 OR51I1Q9H343 314 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 MS4A5Q9H3V2 200 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 SLC2A8Q9NY64 477 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 IL20RAQ9UHF4 553 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 TCFL5Q9UL49 500 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 SIRT4Q9Y6E7 314 aaPredicted RBP4.77□□□□□ -1.65
USP28-213ENST00000544967 TRBV23-1A0A0A0MS06 115 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 A0A0A6YYH2 397 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 SPTY2D1-AS1A0A0U1RR47 76 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 TMEM272A0A1B0GTI8 110 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 A0A1W2PQU0 124 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 DAPL1A0PJW8 107 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 OR5H14A6NHG9 310 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 A6NJ64 397 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 IQCF5A8MTL0 148 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 FAM157AC9JC47 383 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 TSTD3H0UI37 97 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 TAAR5O14804 337 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 XRCC3O43542 346 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 ACTL6AO96019 429 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 AK1P00568 194 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 NME1P15531 152 aaKnown RBP4.77□□□□□ -1.65
USP28-213ENST00000544967 SORDQ00796 357 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 HGFACQ04756 655 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 GAGE1Q13065 139 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 CBFBQ13951 182 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 CDK5R1Q15078 307 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 ZXDCQ2QGD7 858 aaPredicted RBP4.77□□□□□ -1.65
USP28-213ENST00000544967 LYSMD4Q5XG99 296 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 MBOAT2Q6ZWT7 520 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 C9orf40Q8IXQ3 194 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 BEST3Q8N1M1 668 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 MUC20Q8N307 709 aaPredicted RBP4.77□□□□□ -1.65
USP28-213ENST00000544967 ARRDC1Q8N5I2 433 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 SIRT6Q8N6T7 355 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 RELL2Q8NC24 303 aaPredicted RBP4.77□□□□□ -1.65
USP28-213ENST00000544967 TTC16Q8NEE8 873 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 OR4A4PQ8NGN8 299 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 OR4Q3Q8NH05 313 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 GPBAR1Q8TDU6 330 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 HMGB4Q8WW32 186 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 VRK1Q99986 396 aaPredicted RBP4.77□□□□□ -1.65
USP28-213ENST00000544967 SLC17A9Q9BYT1 436 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 POTEKPQ9BYX7 375 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 ZDHHC6Q9H6R6 413 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 PARD6AQ9NPB6 346 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 RHCGQ9UBD6 479 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 B4GALT6Q9UBX8 382 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 LPAR3Q9UBY5 353 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 ZNF292O60281 2723 aa4.77□□□□□ -1.65
USP28-213ENST00000544967 A0A087WUU8 490 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 A0A0B4J2A0 478 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 E9PI62 339 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 ZNF432O94892 652 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 PNPP00491 289 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 CD2P06729 351 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 CD63P08962 238 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 FAM157CP0CG43 387 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 PNLIPP16233 465 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 RAB5AP20339 215 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 SLC2A5P22732 501 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 KHKP50053 298 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 DVL1P1P54792 670 aaPredicted RBP4.76□□□□□ -1.65
USP28-213ENST00000544967 ACTBP60709 375 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 RAB8AP61006 207 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 UBE2MP61081 183 aaKnown RBP4.76□□□□□ -1.65
USP28-213ENST00000544967 ACTG1P63261 375 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 CYCSP99999 105 aaKnown RBP4.76□□□□□ -1.65
USP28-213ENST00000544967 HIST2H3PS2Q5TEC6 136 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 NSUN5P2Q63ZY6 315 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 OR10K2Q6IF99 312 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 PWWP2BQ6NUJ5 590 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 HSD11B1LQ7Z5J1 315 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 THOC6Q86W42 341 aaKnown RBP4.76□□□□□ -1.65
USP28-213ENST00000544967 BAP18Q8IXM2 172 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 ZNF679Q8IYX0 411 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 TMEM229BQ8NBD8 167 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 OR5AP2Q8NGF4 316 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 OR56B1Q8NGI3 324 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 OR4D11Q8NGI4 311 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 OR1N1Q8NGS0 311 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 ADAMTS17Q8TE56 1095 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 C2CD4CQ8TF44 421 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 TNFAIP8L1Q8WVP5 186 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 SSX3Q99909 188 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 BOCQ9BWV1 1114 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 SLC6A16Q9GZN6 736 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 ASB8Q9H765 288 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 PARP11Q9NR21 331 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 P4HTMQ9NXG6 502 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 SHPKQ9UHJ6 478 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 ADAM29Q9UKF5 820 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 SLC35A3Q9Y2D2 325 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 FAM96BQ9Y3D0 163 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 PRSS21Q9Y6M0 314 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 LY6G6EA0A0G2JKS1 128 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 HMGN4O00479 90 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 CDX4O14627 284 aaPredicted RBP4.76□□□□□ -1.65
USP28-213ENST00000544967 SLCO2B1O94956 709 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 BCHEP06276 602 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms