RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 ZNF227Q86WZ6 799 aa14.57□□□□□ -0.08
COL4A1-204ENST00000543140 PLPP7Q8NBV4 271 aa14.57□□□□□ -0.08
COL4A1-204ENST00000543140 OR51D1Q8NGF3 324 aa14.57□□□□□ -0.08
COL4A1-204ENST00000543140 RHBDD1Q8TEB9 315 aa14.57□□□□□ -0.08
COL4A1-204ENST00000543140 MIB2Q96AX9 1013 aa14.57□□□□□ -0.08
COL4A1-204ENST00000543140 PMS2P1A4D2B8 440 aa14.57□□□□□ -0.08
COL4A1-204ENST00000543140 CTDSPLO15194 276 aa14.57□□□□□ -0.08
COL4A1-204ENST00000543140 CYC1P08574 325 aa14.57□□□□□ -0.08
COL4A1-204ENST00000543140 FADS6Q8N9I5 356 aa14.57□□□□□ -0.08
COL4A1-204ENST00000543140 ASB5Q8WWX0 329 aa14.57□□□□□ -0.08
COL4A1-204ENST00000543140 C11orf40Q8WZ69 217 aa14.57□□□□□ -0.08
COL4A1-204ENST00000543140 RBP7Q96R05 134 aa14.57□□□□□ -0.08
COL4A1-204ENST00000543140 STEAP1Q9UHE8 339 aa14.57□□□□□ -0.08
COL4A1-204ENST00000543140 RCE1Q9Y256 329 aa14.57□□□□□ -0.08
COL4A1-204ENST00000543140 LOC101059948A0A1B0GTJ6 334 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 A0A1W2PNV4 684 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 A0A1W2PPL8 197 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 ITGA5P08648 1049 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 CLDN6P56747 220 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 RRAS2P62070 204 aaPredicted RBP14.56□□□□□ -0.08
COL4A1-204ENST00000543140 EXT1Q16394 746 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 HAVCR1Q96D42 359 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 OR2B2Q9GZK3 357 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 ARRDC1-AS1Q9H2J1 176 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 SEC61A2Q9H9S3 476 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 NSG1A0A0A6YYJ2 146 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 TMEM269A0A1B0GVZ9 245 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 NPIPB13A6NJU9 1138 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 NPIPB4C9JG80 1138 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 RAB40ALP0C0E4 278 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 FOLR3P41439 243 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 P2RY4P51582 365 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 EFNB2P52799 333 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 CLRN1P58418 232 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 MFAP5Q13361 173 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 FAM205BPQ63HN1 556 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 SFRP4Q6FHJ7 346 aaPredicted RBP14.56□□□□□ -0.08
COL4A1-204ENST00000543140 OPN5Q6U736 354 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 NHLRC1Q6VVB1 395 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 NOXA1Q86UR1 476 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 PLCZ1Q86YW0 608 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 HIST2H2ABQ8IUE6 130 aaPredicted RBP14.56□□□□□ -0.08
COL4A1-204ENST00000543140 TMEM156Q8N614 296 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 OR10H5Q8NGA6 315 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 FCAMRQ8WWV6 532 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 RAB40AQ8WXH6 277 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 PLSCR3Q9NRY6 295 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 PAQR5Q9NXK6 330 aaPredicted RBP14.56□□□□□ -0.08
COL4A1-204ENST00000543140 R4GMQ9 66 aa14.56□□□□□ -0.08
COL4A1-204ENST00000543140 SMLR1H3BR10 107 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 LMX1BO60663 402 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 SRSF10O75494 262 aaKnown RBP14.55□□□□□ -0.08
COL4A1-204ENST00000543140 H2BFMP0C1H6 154 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 CDAP32320 146 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 RGS19P49795 217 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 BTG1P62324 171 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 TMEM255AQ5JRV8 349 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 DTWD2Q8NBA8 298 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 AKAP1Q92667 903 aaKnown RBP eCLIP14.55□□□□□ -0.08
COL4A1-204ENST00000543140 RNF170Q96K19 258 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 MRI1Q9BV20 369 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 MRPL13Q9BYD1 178 aaKnown RBP14.55□□□□□ -0.08
COL4A1-204ENST00000543140 BEX1Q9HBH7 125 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 EMC7Q9NPA0 242 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 G6PC2Q9NQR9 355 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 NKIRAS2Q9NYR9 191 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 TAS2R4Q9NYW5 299 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 KLHL9Q9P2J3 617 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 OR52A1Q9UKL2 312 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 ETV7Q9Y603 341 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 GABARAPH6UMI1 98 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 SULT2B1O00204 365 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 GMDSO60547 372 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 KRT33AO76009 404 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 DHFRP00374 187 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 CSRP1P21291 193 aaKnown RBP14.55□□□□□ -0.08
COL4A1-204ENST00000543140 SSR4P51571 173 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 PCK2Q16822 640 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 RPS19BP1Q86WX3 136 aaKnown RBP14.55□□□□□ -0.08
COL4A1-204ENST00000543140 OR13C3Q8NGS6 347 aa14.55□□□□□ -0.08
COL4A1-204ENST00000543140 A0A1W2PQ72 361 aa14.54□□□□□ -0.08
COL4A1-204ENST00000543140 TRAF3IP2O43734 574 aaPredicted RBP14.54□□□□□ -0.08
COL4A1-204ENST00000543140 STK17BO94768 372 aa14.54□□□□□ -0.08
COL4A1-204ENST00000543140 AQP8O94778 261 aa14.54□□□□□ -0.08
COL4A1-204ENST00000543140 OTX2P32243 289 aa14.54□□□□□ -0.08
COL4A1-204ENST00000543140 MPLP40238 635 aa14.54□□□□□ -0.08
COL4A1-204ENST00000543140 TAS2R20P59543 309 aa14.54□□□□□ -0.08
COL4A1-204ENST00000543140 ZNF468Q5VIY5 522 aaPredicted RBP14.54□□□□□ -0.08
COL4A1-204ENST00000543140 M1APQ8TC57 530 aa14.54□□□□□ -0.08
COL4A1-204ENST00000543140 SLC25A44Q96H78 314 aaPredicted RBP14.54□□□□□ -0.08
COL4A1-204ENST00000543140 FANCFQ9NPI8 374 aa14.54□□□□□ -0.08
COL4A1-204ENST00000543140 NUBP2Q9Y5Y2 271 aa14.54□□□□□ -0.08
COL4A1-204ENST00000543140 LOC107986453A0A1B0GWG9 222 aa14.54□□□□□ -0.08
COL4A1-204ENST00000543140 P2RY10O00398 339 aa14.54□□□□□ -0.08
COL4A1-204ENST00000543140 CD2P06729 351 aa14.54□□□□□ -0.08
COL4A1-204ENST00000543140 PGA4P0DJD7 388 aa14.54□□□□□ -0.08
COL4A1-204ENST00000543140 PGA3P0DJD8 388 aa14.54□□□□□ -0.08
COL4A1-204ENST00000543140 EIF1P41567 113 aaKnown RBP14.54□□□□□ -0.08
COL4A1-204ENST00000543140 POU3F4P49335 361 aa14.54□□□□□ -0.08
COL4A1-204ENST00000543140 SLC22A10Q63ZE4 541 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms