RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 BMPR1BO00238 502 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 SOCS6O14544 535 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 KLK10O43240 276 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 TLX2O43763 284 aaPredicted RBP3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 ZIC3O60481 467 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 WBP4O75554 376 aaKnown RBP3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 KLF7O75840 302 aaPredicted RBP3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 OR7A10O76100 309 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 KDM4BO94953 1096 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 NDUFB2O95178 105 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 OR6A2O95222 327 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 LYPD3O95274 346 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 NADKO95544 446 aaPredicted RBP3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 PMS2P2O95744 297 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 RAB36O95755 333 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 MT-ND2P03891 347 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 THY1P04216 161 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 HIST1H2ABP04908 130 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 CDK1P06493 297 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 IGFBP1P08833 259 aaPredicted RBP3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 DBTP11182 482 aaKnown RBP3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 ICAM2P13598 275 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 MYL12AP19105 171 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 FUT1P19526 365 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 CD82P27701 267 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 PSMB9P28065 219 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 ATP6V1E1P36543 226 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 SOX3P41225 446 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 ALDH3B2P48448 385 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 SLC9A3P48764 834 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 POLR2HP52434 150 aaKnown RBP3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 LIMK1P53667 647 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 CDH11P55287 796 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 CTBP2P56545 445 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 SNRPGP62308 76 aaKnown RBP3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 SLC35A2P78381 396 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 CDK5Q00535 292 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 C1DQ13901 141 aaKnown RBP3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 NTRK2Q16620 822 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 COL28A1Q2UY09 1125 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 ZBED5Q49AG3 693 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 LCN1P1Q5VSP4 162 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 PRAMEF20Q5VT98 475 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 MEDAGQ5VYS4 303 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 ARHGAP11AQ6P4F7 1023 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 SMARCD3Q6STE5 483 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 CBLN3Q6UW01 205 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 C5orf46Q6UWT4 87 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 APOOLQ6UXV4 268 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 C16orf47Q6ZP98 133 aaPredicted RBP3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 RTL4Q6ZR62 310 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 TMPRSS11FQ6ZWK6 438 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 HIST3H2AQ7L7L0 130 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 PRSS48Q7RTY5 328 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 TIPARPQ7Z3E1 657 aaKnown RBP3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 GRINAQ7Z429 371 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 OAFQ86UD1 273 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 CLVS1Q8IUQ0 354 aaPredicted RBP3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 CCDC71Q8IV32 467 aaPredicted RBP3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 GID4Q8IVV7 300 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 PARP16Q8N5Y8 322 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 OR11G2Q8NGC1 345 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 OR8D4Q8NGM9 314 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 OR4Q3Q8NH05 313 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 OR51A7Q8NH64 312 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 OR5W2Q8NH69 310 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 C9orf43Q8TAL5 461 aaPredicted RBP3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 DUSP19Q8WTR2 217 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 TRUB1Q8WWH5 349 aaKnown RBP3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 ST8SIA1Q92185 356 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 RORBQ92753 470 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 HIST1H2ACQ93077 130 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 HGDQ93099 445 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 JSRP1Q96MG2 331 aaPredicted RBP3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 COG8Q96MW5 612 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 ZNF385AQ96PM9 386 aaKnown RBP3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 TUBA1CQ9BQE3 449 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 TMEM43Q9BTV4 400 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 PLA2G12AQ9BZM1 189 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 SLC19A3Q9BZV2 496 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 YIPF3Q9GZM5 350 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 PTGES2Q9H7Z7 377 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 AKIRIN1Q9H9L7 192 aaPredicted RBP3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 GPN2Q9H9Y4 310 aaPredicted RBP3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 SDF2L1Q9HCN8 221 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 NANSQ9NR45 359 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 C20orf141Q9NUB4 165 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 MED17Q9NVC6 651 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 HPF1Q9NWY4 346 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 CHCHD3Q9NX63 227 aaKnown RBP3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 ALKBH4Q9NXW9 302 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 GPR83Q9NYM4 423 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 ZNF226Q9NYT6 803 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 CNOT2Q9NZN8 540 aaKnown RBP3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 ERVK-18Q9QC07 812 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 RSL24D1Q9UHA3 163 aaKnown RBP3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 IL20RAQ9UHF4 553 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 PSORS1C1Q9UIG5 152 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 DKKL1Q9UK85 242 aa3.37□□□□□ -1.87
HMGB3P20-201ENST00000417997 VDAC3Q9Y277 283 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms