RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 PPP1CAP62136 330 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 ESRRGP62508 458 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 PSPHP78330 225 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 LASP1Q14847 261 aaKnown RBP4.16□□□□□ -1.74
VPS29-212ENST00000621131 NR1D2Q14995 579 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 TAF13Q15543 124 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 ZSWIM7Q19AV6 140 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 HLA-BQ31612 363 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 ZNF528Q3MIS6 628 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 LIN52Q52LA3 116 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 KLHL26Q53HC5 615 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 C6orf52Q5T4I8 152 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 RANBP3LQ86VV4 465 aaPredicted RBP4.16□□□□□ -1.74
VPS29-212ENST00000621131 OR2L13Q8N349 312 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 COX18Q8N8Q8 333 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 SUMF1Q8NBK3 374 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 OR9A4Q8NGU2 314 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 GIPC3Q8TF64 312 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 PHF10Q8WUB8 498 aaKnown RBP4.16□□□□□ -1.74
VPS29-212ENST00000621131 MAL2Q969L2 176 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 CNRIP1Q96F85 164 aaPredicted RBP4.16□□□□□ -1.74
VPS29-212ENST00000621131 SMIM10Q96HG1 83 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 COL21A1Q96P44 957 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 TRNT1Q96Q11 434 aaKnown RBP4.16□□□□□ -1.74
VPS29-212ENST00000621131 OR7D2Q96RA2 312 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 STACQ99469 402 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 FNDC11Q9BVV2 318 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 PINK1Q9BXM7 581 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 TEX12Q9BXU0 123 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 YTHDF1Q9BYJ9 559 aaKnown RBP4.16□□□□□ -1.74
VPS29-212ENST00000621131 POLR2J2Q9GZM3 115 aaKnown RBP4.16□□□□□ -1.74
VPS29-212ENST00000621131 AICDAQ9GZX7 198 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 POLR2J3Q9H1A7 115 aaKnown RBP4.16□□□□□ -1.74
VPS29-212ENST00000621131 BCL2L10Q9HD36 194 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 ADAP2Q9NPF8 381 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 POLE3Q9NRF9 147 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 STARD5Q9NSY2 213 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 CUTCQ9NTM9 273 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 C14orf105Q9NVL8 296 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 GIN1Q9NXP7 522 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 NDUFA13Q9P0J0 144 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 PDP1Q9P0J1 537 aaPredicted RBP4.16□□□□□ -1.74
VPS29-212ENST00000621131 PRODH2Q9UF12 536 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 ZNF639Q9UID6 485 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 MRTO4Q9UKD2 239 aaKnown RBP4.16□□□□□ -1.74
VPS29-212ENST00000621131 KLK13Q9UKR3 277 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 SATB2Q9UPW6 733 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 CFL2Q9Y281 166 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 POFUT2Q9Y2G5 429 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 MMACHCQ9Y4U1 282 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 CSAG2Q9Y5P2 127 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 ENPP4Q9Y6X5 453 aa4.16□□□□□ -1.74
VPS29-212ENST00000621131 TNRC6BQ9UPQ9 1833 aaKnown RBP4.16□□□□□ -1.74
VPS29-212ENST00000621131 A0A087WXM4 84 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 A0A087X0M5 115 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 IGHV5-51A0A0C4DH38 117 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 A0A1B0GX30 115 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 A0A1B0GX78 115 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 ARRDC5A6NEK1 342 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 WASHC1A8K0Z3 465 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 A8MU76 341 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 FAAHO00519 579 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 BCKDKO14874 412 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 PLOD3O60568 738 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 B4GALT2O60909 372 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 NOL3O60936 208 aaKnown RBP4.15□□□□□ -1.75
VPS29-212ENST00000621131 STX11O75558 287 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 H6PDO95479 791 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 CPNE6O95741 557 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 SCGB1D1O95968 90 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 SEMG1P04279 462 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 RPLP0P05388 317 aaKnown RBP4.15□□□□□ -1.75
VPS29-212ENST00000621131 DBIP07108 87 aaKnown RBP4.15□□□□□ -1.75
VPS29-212ENST00000621131 TFPTP0C1Z6 253 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 ANKRD34CP0C6C1 535 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 PABPC4LP0CB38 370 aaKnown RBP4.15□□□□□ -1.75
VPS29-212ENST00000621131 TDGF1P13385 188 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 MMP9P14780 707 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 NELFEP18615 380 aaKnown RBP4.15□□□□□ -1.75
VPS29-212ENST00000621131 XCR1P46094 333 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 UGT2B15P54855 530 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 NUP107P57740 925 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 CX3CL1P78423 397 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 VLDLRP98155 873 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 SYPL1Q16563 259 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 ARHGAP11BQ3KRB8 267 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 SLC36A3Q495N2 470 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 KCTD21Q4G0X4 260 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 ZNF311Q5JNZ3 666 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 FGD3Q5JSP0 725 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 RBM48Q5RL73 367 aaKnown RBP4.15□□□□□ -1.75
VPS29-212ENST00000621131 NKAIN2Q5VXU1 208 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 MFSD12Q6NUT3 480 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 FAM180BQ6P0A1 224 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 VTCN1Q7Z7D3 282 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 GALNT10Q86SR1 603 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 CARM1Q86X55 608 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 LACC1Q8IV20 430 aa4.15□□□□□ -1.75
VPS29-212ENST00000621131 MAML2Q8IZL2 1156 aaPredicted RBP4.15□□□□□ -1.75
VPS29-212ENST00000621131 OFCC1Q8IZS5 231 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms