RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 NRN1Q9NPD7 142 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 ANO10Q9NW15 660 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 CHMP5Q9NZZ3 219 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 IFNKQ9P0W0 207 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 GALPQ9UBC7 116 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 TRPC4Q9UBN4 977 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 TAC3Q9UHF0 121 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 PCYOX1Q9UHG3 505 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 TEKT2Q9UIF3 430 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 DNPEPQ9ULA0 475 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 EMCNQ9ULC0 261 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 RAB26Q9ULW5 256 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 RPL26L1Q9UNX3 145 aaKnown RBP2.1□□□□□ -2.07
SCFD1-219ENST00000556413 FOXA2Q9Y261 457 aaPredicted RBP2.1□□□□□ -2.07
SCFD1-219ENST00000556413 KLHDC2Q9Y2U9 406 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 POLQO75417 2590 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 C2CD3Q4AC94 2353 aa2.1□□□□□ -2.07
SCFD1-219ENST00000556413 NF1P21359 2839 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 DCHS2Q6V1P9 2916 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 DOPEY1Q5JWR5 2465 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 IGHV1-45A0A0A0MS14 117 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 IGKV1-8A0A0C4DH67 115 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 A0A0G2JN53 185 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 A0A1B0GUH1 482 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 A0A1W2PPV9 198 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 SLC5A10A0PJK1 596 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 RGSL1A5PLK6 1076 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 GABRR3A8MPY1 467 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 IDSB3KWA1 339 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 GPR89AB7ZAQ6 455 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 TRIM49D1C9J1S8 452 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 C4orf51C9J302 202 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 H0YGG7 62 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 EMC8O43402 210 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 TGDSO95455 350 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 SERPIND1P05546 499 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 CCDC172P0C7W6 258 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 GPR89BP0CG08 455 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 GZMAP12544 262 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 CD99P14209 185 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 MSNP26038 577 aaKnown RBP2.09□□□□□ -2.07
SCFD1-219ENST00000556413 FOXN2P32314 431 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 SHMT2P34897 504 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 ADRA1AP35348 466 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 SAA4P35542 130 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 TNNT3P45378 269 aaPredicted RBP2.09□□□□□ -2.07
SCFD1-219ENST00000556413 SLC7A2P52569 658 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 EMP2P54851 167 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 NME5P56597 212 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 NUP107P57740 925 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 EIF3EP60228 445 aaKnown RBP2.09□□□□□ -2.07
SCFD1-219ENST00000556413 ZNF85Q03923 595 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 SNX1Q13596 522 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 KCNJ11Q14654 390 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 EXOSC7Q15024 291 aaKnown RBP2.09□□□□□ -2.07
SCFD1-219ENST00000556413 PDK2Q15119 407 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 TAF1AQ15573 450 aaPredicted RBP2.09□□□□□ -2.07
SCFD1-219ENST00000556413 TRADDQ15628 312 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 CD226Q15762 336 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 CTSL3PQ5NE16 218 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 PDPK2PQ6A1A2 396 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 RTL6Q6ICC9 239 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 RBM43Q6ZSC3 357 aaKnown RBP2.09□□□□□ -2.07
SCFD1-219ENST00000556413 SNX20Q7Z614 316 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 DOLPP1Q86YN1 238 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 PSTKQ8IV42 348 aaKnown RBP2.09□□□□□ -2.07
SCFD1-219ENST00000556413 CSNK1A1LQ8N752 337 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 ZNF321PQ8N8H1 164 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 ACTL9Q8TC94 416 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 CTNNBL1Q8WYA6 563 aaPredicted RBP2.09□□□□□ -2.07
SCFD1-219ENST00000556413 P3H4Q92791 437 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 STARD4Q96DR4 205 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 CAPZA3Q96KX2 299 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 GPR137Q96N19 417 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 SPATA13Q96N96 652 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 TBX15Q96SF7 602 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 SPAG8Q99932 426 aaPredicted RBP2.09□□□□□ -2.07
SCFD1-219ENST00000556413 DESI2Q9BSY9 194 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 DPH7Q9BTV6 452 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 XPO4Q9C0E2 1151 aaKnown RBP2.09□□□□□ -2.07
SCFD1-219ENST00000556413 RAB33BQ9H082 229 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 SPNS1Q9H2V7 528 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 HOMER3Q9NSC5 361 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 SMOXQ9NWM0 555 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 AIPL1Q9NZN9 384 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 GNPTGQ9UJJ9 305 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 RNF6Q9Y252 685 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 MEMO1Q9Y316 297 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 CUBNO60494 3623 aa2.09□□□□□ -2.07
SCFD1-219ENST00000556413 ANK2Q01484 3957 aa2.09□□□□□ -2.08
SCFD1-219ENST00000556413 SPTBP11277 2137 aa2.09□□□□□ -2.08
SCFD1-219ENST00000556413 HIVEP3Q5T1R4 2406 aa2.09□□□□□ -2.08
SCFD1-219ENST00000556413 HIVEP1P15822 2718 aa2.09□□□□□ -2.08
SCFD1-219ENST00000556413 RP1L1Q8IWN7 2480 aaPredicted RBP2.09□□□□□ -2.08
SCFD1-219ENST00000556413 APCP25054 2843 aa2.09□□□□□ -2.08
SCFD1-219ENST00000556413 TRAV17A0A0B4J275 112 aa2.08□□□□□ -2.08
SCFD1-219ENST00000556413 TRBV11-1A0A0K0K1C0 115 aa2.08□□□□□ -2.08
SCFD1-219ENST00000556413 TRIM64A6NGJ6 449 aa2.08□□□□□ -2.08
SCFD1-219ENST00000556413 TRIM64BA6NI03 449 aa2.08□□□□□ -2.08
SCFD1-219ENST00000556413 VSTM2BA6NLU5 285 aa2.08□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms