RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 DUSP15Q9H1R2 295 aaPredicted RBP7.17□□□□□ -1.26
VPS13D-211ENST00000543710 NOX4Q9NPH5 578 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 DNAJB11Q9UBS4 358 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 SNX11Q9Y5W9 270 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 TRBV11-1A0A0K0K1C0 115 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 TMEM269A0A1B0GVZ9 245 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 CTDSPLO15194 276 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 SPDEFO95238 335 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 GSTP1P09211 210 aaKnown RBP7.17□□□□□ -1.26
VPS13D-211ENST00000543710 SLC6A12P48065 614 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 POU3F4P49335 361 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 FOXA1P55317 472 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 SSX2Q16385 188 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 MEP1BQ16820 701 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 MOB1BQ7L9L4 216 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 TMEM151AQ8N4L1 468 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 ZNF611Q8N823 705 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 ZNF480Q8WV37 535 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 LIN7CQ9NUP9 197 aaKnown RBP7.17□□□□□ -1.26
VPS13D-211ENST00000543710 STRCQ7RTU9 1775 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 TRBV4-1A0A0J9YWV2 114 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 GFYI3L273 518 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 MGMTP16455 207 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 ANXA7P20073 488 aaKnown RBP7.17□□□□□ -1.26
VPS13D-211ENST00000543710 KITLGP21583 273 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 RAC1P63000 192 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 ERVK-25P63136 954 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 C18orf21Q32NC0 220 aaPredicted RBP7.17□□□□□ -1.26
VPS13D-211ENST00000543710 AARDQ4LEZ3 155 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 EXOSC6Q5RKV6 272 aaKnown RBP7.17□□□□□ -1.26
VPS13D-211ENST00000543710 TMPRSS7Q7RTY8 843 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 ZDHHC22Q8N966 263 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 GJC3Q8NFK1 279 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 RBMXL1Q96E39 390 aaKnown RBP7.17□□□□□ -1.26
VPS13D-211ENST00000543710 AKR1E2Q96JD6 320 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 ARHGDIGQ99819 225 aa7.17□□□□□ -1.26
VPS13D-211ENST00000543710 C19orf53Q9UNZ5 99 aaPredicted RBP7.17□□□□□ -1.26
VPS13D-211ENST00000543710 EXOGQ9Y2C4 368 aaKnown RBP7.17□□□□□ -1.26
VPS13D-211ENST00000543710 AK6Q9Y3D8 172 aaKnown RBP7.17□□□□□ -1.26
VPS13D-211ENST00000543710 TMED7-TICAM2A0A0A6YYA0 188 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 TRBV5-4A0A0C4DH59 114 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 K7EQS6 105 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 TO15178 435 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 TAPBPO15533 448 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 MMP15P51511 669 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 IDH3GP51553 393 aaPredicted RBP7.16□□□□□ -1.26
VPS13D-211ENST00000543710 GP2P55259 537 aaKnown RBP7.16□□□□□ -1.26
VPS13D-211ENST00000543710 JAG1P78504 1218 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 MRPL2Q5T653 305 aaKnown RBP7.16□□□□□ -1.26
VPS13D-211ENST00000543710 CD300LDQ6UXZ3 194 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 CFAP77Q6ZQR2 320 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 AMIGO3Q86WK7 504 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 OR51L1Q8NGJ5 315 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 RPL3LQ92901 407 aaKnown RBP7.16□□□□□ -1.26
VPS13D-211ENST00000543710 ZMYND19Q96E35 227 aaPredicted RBP7.16□□□□□ -1.26
VPS13D-211ENST00000543710 PHYHIPLQ96FC7 376 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 NKX6-2Q9C056 277 aaPredicted RBP7.16□□□□□ -1.26
VPS13D-211ENST00000543710 CHST6Q9GZX3 395 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 PLEKHF2Q9H8W4 249 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 BCO1Q9HAY6 547 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 SIRT5Q9NXA8 310 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 SIDT1Q9NXL6 827 aaKnown RBP7.16□□□□□ -1.26
VPS13D-211ENST00000543710 CNIH4Q9P003 139 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 TMED7Q9Y3B3 224 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 NEUROG3Q9Y4Z2 214 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 FRG2CA6NGY1 282 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 E5RGE8 158 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 AIPO00170 330 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 CDC123O75794 336 aaPredicted RBP7.16□□□□□ -1.26
VPS13D-211ENST00000543710 STK17BO94768 372 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 SFTPDP35247 375 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 TAS2R45P59539 299 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 NHLH1Q02575 133 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 ZNF648Q5T619 568 aaPredicted RBP7.16□□□□□ -1.26
VPS13D-211ENST00000543710 MFSD12Q6NUT3 480 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 MEX3BQ6ZN04 569 aaKnown RBP7.16□□□□□ -1.26
VPS13D-211ENST00000543710 FAM71CQ8NEG0 241 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 PAQR8Q8TEZ7 354 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 KIRREL1Q96J84 757 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.16□□□□□ -1.26
VPS13D-211ENST00000543710 GLOD5A6NK44 160 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 A8MV72 311 aaPredicted RBP7.16□□□□□ -1.26
VPS13D-211ENST00000543710 ZNF593O00488 134 aaPredicted RBP7.16□□□□□ -1.26
VPS13D-211ENST00000543710 TERTO14746 1132 aaKnown RBP7.16□□□□□ -1.26
VPS13D-211ENST00000543710 IGLV3-25P01717 112 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 TFPTP0C1Z6 253 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 SBK2P0C263 348 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 LIMS3P0CW19 117 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 LIMS4P0CW20 117 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 EVI2BP34910 448 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 MLF1P58340 268 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 ACOT7LQ6ZUV0 252 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 USP51Q70EK9 711 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 SPATC1Q76KD6 591 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 VRK2Q86Y07 508 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 SLC30A7Q8NEW0 376 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 OR10R2Q8NGX6 335 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 YIPF5Q969M3 257 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 CTRCQ99895 268 aa7.16□□□□□ -1.26
VPS13D-211ENST00000543710 ABHD6Q9BV23 337 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms