RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 UBR3Q6ZT12 1888 aa14.09□□□□□ -0.15
LINC00538-201ENST00000626109 HDAC1Q13547 482 aaPredicted RBP14.09□□□□□ -0.15
LINC00538-201ENST00000626109 ANKRD13DQ6ZTN6 518 aa14.09□□□□□ -0.15
LINC00538-201ENST00000626109 RIC3Q7Z5B4 369 aa14.09□□□□□ -0.15
LINC00538-201ENST00000626109 USTQ9Y2C2 406 aa14.09□□□□□ -0.15
LINC00538-201ENST00000626109 FAN1Q9Y2M0 1017 aa14.09□□□□□ -0.15
LINC00538-201ENST00000626109 RFC4P35249 363 aa14.08□□□□□ -0.16
LINC00538-201ENST00000626109 SF3A1Q15459 793 aaKnown RBP14.08□□□□□ -0.16
LINC00538-201ENST00000626109 KSR2Q6VAB6 950 aa14.08□□□□□ -0.16
LINC00538-201ENST00000626109 PLBD2Q8NHP8 589 aa14.08□□□□□ -0.16
LINC00538-201ENST00000626109 TBC1D2BQ9UPU7 963 aa14.08□□□□□ -0.16
LINC00538-201ENST00000626109 MAP3K15Q6ZN16 1313 aa14.08□□□□□ -0.16
LINC00538-201ENST00000626109 PI4KAP2A4QPH2 592 aa14.07□□□□□ -0.16
LINC00538-201ENST00000626109 WDR78Q5VTH9 848 aa14.07□□□□□ -0.16
LINC00538-201ENST00000626109 SMIM5Q71RC9 77 aa14.07□□□□□ -0.16
LINC00538-201ENST00000626109 AMIGO3Q86WK7 504 aa14.07□□□□□ -0.16
LINC00538-201ENST00000626109 PI4KAP1Q8N8J0 262 aa14.07□□□□□ -0.16
LINC00538-201ENST00000626109 ZBTB3Q9H5J0 574 aa14.07□□□□□ -0.16
LINC00538-201ENST00000626109 GOPCQ9HD26 462 aa14.07□□□□□ -0.16
LINC00538-201ENST00000626109 ZPR1O75312 459 aa14.07□□□□□ -0.16
LINC00538-201ENST00000626109 TRIM27P14373 513 aa14.07□□□□□ -0.16
LINC00538-201ENST00000626109 ITPRIPQ8IWB1 547 aa14.07□□□□□ -0.16
LINC00538-201ENST00000626109 SDR16C5Q8N3Y7 309 aa14.07□□□□□ -0.16
LINC00538-201ENST00000626109 MAP3K2Q9Y2U5 619 aa14.07□□□□□ -0.16
LINC00538-201ENST00000626109 ADCY9O60503 1353 aa14.06□□□□□ -0.16
LINC00538-201ENST00000626109 hCG_2014768A0A024R1R8 64 aa14.06□□□□□ -0.16
LINC00538-201ENST00000626109 ERVV-1B6SEH8 477 aa14.06□□□□□ -0.16
LINC00538-201ENST00000626109 DNAAF4Q8WXU2 420 aa14.06□□□□□ -0.16
LINC00538-201ENST00000626109 NARFQ9UHQ1 456 aa14.06□□□□□ -0.16
LINC00538-201ENST00000626109 TNNQ9UQP3 1299 aa14.06□□□□□ -0.16
LINC00538-201ENST00000626109 ZNF652Q9Y2D9 606 aa14.06□□□□□ -0.16
LINC00538-201ENST00000626109 C4AP0C0L4 1744 aa14.06□□□□□ -0.16
LINC00538-201ENST00000626109 F6X3S4 739 aa14.05□□□□□ -0.16
LINC00538-201ENST00000626109 CAMTA2O94983 1202 aa14.05□□□□□ -0.16
LINC00538-201ENST00000626109 TBC1D32Q96NH3 1257 aa14.05□□□□□ -0.16
LINC00538-201ENST00000626109 PNPLA7Q6ZV29 1317 aa14.05□□□□□ -0.16
LINC00538-201ENST00000626109 USP42Q9H9J4 1324 aaKnown RBP14.05□□□□□ -0.16
LINC00538-201ENST00000626109 TUBGCP6Q96RT7 1819 aa14.05□□□□□ -0.16
LINC00538-201ENST00000626109 SCN7AQ01118 1682 aa14.05□□□□□ -0.16
LINC00538-201ENST00000626109 QSER1Q2KHR3 1735 aa14.05□□□□□ -0.16
LINC00538-201ENST00000626109 NEXNQ0ZGT2 675 aa14.05□□□□□ -0.16
LINC00538-201ENST00000626109 SLC4A10Q6U841 1118 aa14.05□□□□□ -0.16
LINC00538-201ENST00000626109 BCORQ6W2J9 1755 aa14.04□□□□□ -0.16
LINC00538-201ENST00000626109 PXDNLA1KZ92 1463 aa14.04□□□□□ -0.16
LINC00538-201ENST00000626109 SEC24BO95487 1268 aa14.04□□□□□ -0.16
LINC00538-201ENST00000626109 RFX1P22670 979 aa14.04□□□□□ -0.16
LINC00538-201ENST00000626109 IGBP1P78318 339 aa14.04□□□□□ -0.16
LINC00538-201ENST00000626109 HSP90AB3PQ58FF7 597 aa14.04□□□□□ -0.16
LINC00538-201ENST00000626109 USPL1Q5W0Q7 1092 aa14.04□□□□□ -0.16
LINC00538-201ENST00000626109 GIGYF2Q6Y7W6 1299 aaKnown RBP14.04□□□□□ -0.16
LINC00538-201ENST00000626109 COL23A1Q86Y22 540 aaPredicted RBP14.04□□□□□ -0.16
LINC00538-201ENST00000626109 PARP9Q8IXQ6 854 aa14.04□□□□□ -0.16
LINC00538-201ENST00000626109 CALR3Q96L12 384 aaKnown RBP14.04□□□□□ -0.16
LINC00538-201ENST00000626109 PCMTD1Q96MG8 357 aaPredicted RBP14.04□□□□□ -0.16
LINC00538-201ENST00000626109 METTL22Q9BUU2 404 aaPredicted RBP14.04□□□□□ -0.16
LINC00538-201ENST00000626109 SRP68Q9UHB9 627 aaKnown RBP14.04□□□□□ -0.16
LINC00538-201ENST00000626109 ABCC4O15439 1325 aa14.04□□□□□ -0.16
LINC00538-201ENST00000626109 ARFGEF2Q9Y6D5 1785 aa14.04□□□□□ -0.16
LINC00538-201ENST00000626109 POLD1P28340 1107 aa14.03□□□□□ -0.16
LINC00538-201ENST00000626109 GIPC2Q8TF65 315 aa14.03□□□□□ -0.16
LINC00538-201ENST00000626109 EPB41L2O43491 1005 aaKnown RBP14.03□□□□□ -0.16
LINC00538-201ENST00000626109 HLFQ16534 295 aa14.03□□□□□ -0.16
LINC00538-201ENST00000626109 CCDC96Q2M329 555 aa14.03□□□□□ -0.16
LINC00538-201ENST00000626109 DNAJC14Q6Y2X3 702 aaPredicted RBP14.03□□□□□ -0.16
LINC00538-201ENST00000626109 MYD88Q99836 296 aa14.03□□□□□ -0.16
LINC00538-201ENST00000626109 TTC36A6NLP5 189 aa14.02□□□□□ -0.16
LINC00538-201ENST00000626109 TBC1D12O60347 775 aa14.02□□□□□ -0.16
LINC00538-201ENST00000626109 CCT4P50991 539 aaKnown RBP14.02□□□□□ -0.16
LINC00538-201ENST00000626109 RHBDL3P58872 404 aa14.02□□□□□ -0.16
LINC00538-201ENST00000626109 ARMCX6Q7L4S7 300 aa14.02□□□□□ -0.16
LINC00538-201ENST00000626109 TMX4Q9H1E5 349 aaPredicted RBP14.02□□□□□ -0.16
LINC00538-201ENST00000626109 ATP10DQ9P241 1426 aa14.02□□□□□ -0.16
LINC00538-201ENST00000626109 SOCS7O14512 581 aa14.02□□□□□ -0.17
LINC00538-201ENST00000626109 FRAT2O75474 233 aaPredicted RBP14.02□□□□□ -0.17
LINC00538-201ENST00000626109 WDHD1O75717 1129 aaPredicted RBP14.02□□□□□ -0.17
LINC00538-201ENST00000626109 TCIRG1Q13488 830 aa14.02□□□□□ -0.17
LINC00538-201ENST00000626109 NOM1Q5C9Z4 860 aaKnown RBP14.02□□□□□ -0.17
LINC00538-201ENST00000626109 LINS1Q8NG48 757 aa14.02□□□□□ -0.17
LINC00538-201ENST00000626109 PBXIP1Q96AQ6 731 aa14.02□□□□□ -0.17
LINC00538-201ENST00000626109 SRCIN1Q9C0H9 1055 aa14.02□□□□□ -0.17
LINC00538-201ENST00000626109 TMA7Q9Y2S6 64 aaKnown RBP14.02□□□□□ -0.17
LINC00538-201ENST00000626109 PTPROQ16827 1216 aa14.01□□□□□ -0.17
LINC00538-201ENST00000626109 BCL2L12Q9HB09 334 aa14.01□□□□□ -0.17
LINC00538-201ENST00000626109 ZBTB40Q9NUA8 1239 aa14.01□□□□□ -0.17
LINC00538-201ENST00000626109 EIF3JO75822 258 aaKnown RBP14□□□□□ -0.17
LINC00538-201ENST00000626109 GYS1P13807 737 aa14□□□□□ -0.17
LINC00538-201ENST00000626109 R3HDM1Q15032 1099 aaKnown RBP14□□□□□ -0.17
LINC00538-201ENST00000626109 BEND3Q5T5X7 828 aa14□□□□□ -0.17
LINC00538-201ENST00000626109 INTS3Q68E01 1043 aaKnown RBP14□□□□□ -0.17
LINC00538-201ENST00000626109 TMEM57Q8N5G2 664 aa14□□□□□ -0.17
LINC00538-201ENST00000626109 ATP5J2-PTCD1G3V325 749 aa14□□□□□ -0.17
LINC00538-201ENST00000626109 ALDH1L1O75891 902 aa14□□□□□ -0.17
LINC00538-201ENST00000626109 LIG1P18858 919 aa14□□□□□ -0.17
LINC00538-201ENST00000626109 GPTP24298 496 aa14□□□□□ -0.17
LINC00538-201ENST00000626109 CASC1Q6TDU7 716 aa14□□□□□ -0.17
LINC00538-201ENST00000626109 C11orf96Q7Z7L8 435 aa14□□□□□ -0.17
LINC00538-201ENST00000626109 NBPF11Q86T75 865 aa14□□□□□ -0.17
LINC00538-201ENST00000626109 SPACA7Q96KW9 195 aa14□□□□□ -0.17
LINC00538-201ENST00000626109 ISCA1Q9BUE6 129 aa14□□□□□ -0.17
LINC00538-201ENST00000626109 GNL3LQ9NVN8 582 aaKnown RBP14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms