RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 CAVIN2O95810 425 aa10.14□□□□□ -0.79
LIG4-204ENST00000611712 TNNT1P13805 278 aa10.14□□□□□ -0.79
LIG4-204ENST00000611712 ATP5JP18859 108 aa10.14□□□□□ -0.79
LIG4-204ENST00000611712 XBP1P17861 261 aa10.13□□□□□ -0.79
LIG4-204ENST00000611712 PTGS1P23219 599 aa10.13□□□□□ -0.79
LIG4-204ENST00000611712 PDCL2Q8N4E4 241 aa10.13□□□□□ -0.79
LIG4-204ENST00000611712 MNS1Q8NEH6 495 aa10.13□□□□□ -0.79
LIG4-204ENST00000611712 ANKRD18BA2A2Z9 1011 aa10.13□□□□□ -0.79
LIG4-204ENST00000611712 RNF113AO15541 343 aaKnown RBP10.13□□□□□ -0.79
LIG4-204ENST00000611712 CCDC82Q8N4S0 544 aa10.13□□□□□ -0.79
LIG4-204ENST00000611712 KBTBD3Q8NAB2 608 aa10.13□□□□□ -0.79
LIG4-204ENST00000611712 NCOA7Q8NI08 942 aa10.13□□□□□ -0.79
LIG4-204ENST00000611712 LEO1Q8WVC0 666 aaPredicted RBP10.13□□□□□ -0.79
LIG4-204ENST00000611712 SEC62Q99442 399 aaKnown RBP10.13□□□□□ -0.79
LIG4-204ENST00000611712 ADAMTS13Q76LX8 1427 aa10.13□□□□□ -0.79
LIG4-204ENST00000611712 ZNF500O60304 480 aaPredicted RBP10.13□□□□□ -0.79
LIG4-204ENST00000611712 SASH1O94885 1247 aa10.13□□□□□ -0.79
LIG4-204ENST00000611712 TPM1P09493 284 aa10.13□□□□□ -0.79
LIG4-204ENST00000611712 HSP90AB3PQ58FF7 597 aa10.13□□□□□ -0.79
LIG4-204ENST00000611712 ZNF594Q96JF6 807 aaPredicted RBP10.13□□□□□ -0.79
LIG4-204ENST00000611712 TRMT1Q9NXH9 659 aaKnown RBP10.13□□□□□ -0.79
LIG4-204ENST00000611712 A1BGP04217 495 aa10.12□□□□□ -0.79
LIG4-204ENST00000611712 PHKG2P15735 406 aa10.12□□□□□ -0.79
LIG4-204ENST00000611712 PTPN14Q15678 1187 aa10.12□□□□□ -0.79
LIG4-204ENST00000611712 CCDC144CPQ8IYA2 1237 aa10.12□□□□□ -0.79
LIG4-204ENST00000611712 NAPBQ9H115 298 aa10.12□□□□□ -0.79
LIG4-204ENST00000611712 AGLP35573 1532 aa10.12□□□□□ -0.79
LIG4-204ENST00000611712 A0A1B0GUL7 405 aa10.12□□□□□ -0.79
LIG4-204ENST00000611712 ZFYP08048 801 aaPredicted RBP10.12□□□□□ -0.79
LIG4-204ENST00000611712 SLC3A2P08195 630 aaKnown RBP10.12□□□□□ -0.79
LIG4-204ENST00000611712 ZNF771Q7L3S4 317 aaPredicted RBP10.12□□□□□ -0.79
LIG4-204ENST00000611712 TTC6Q86TZ1 520 aa10.12□□□□□ -0.79
LIG4-204ENST00000611712 MICU3Q86XE3 530 aa10.12□□□□□ -0.79
LIG4-204ENST00000611712 NCOA5Q9HCD5 579 aaKnown RBP10.12□□□□□ -0.79
LIG4-204ENST00000611712 LRP2BPQ9P2M1 347 aa10.12□□□□□ -0.79
LIG4-204ENST00000611712 SMTNL1A8MU46 457 aa10.12□□□□□ -0.79
LIG4-204ENST00000611712 EYA2O00167 538 aa10.12□□□□□ -0.79
LIG4-204ENST00000611712 LIG1P18858 919 aa10.12□□□□□ -0.79
LIG4-204ENST00000611712 ATP2B3Q16720 1220 aa10.12□□□□□ -0.79
LIG4-204ENST00000611712 IFT172Q9UG01 1749 aa10.11□□□□□ -0.79
LIG4-204ENST00000611712 SFPQP23246 707 aaKnown RBP eCLIP10.11□□□□□ -0.79
LIG4-204ENST00000611712 ISM2Q6H9L7 571 aa10.11□□□□□ -0.79
LIG4-204ENST00000611712 PRC1O43663 620 aa10.11□□□□□ -0.79
LIG4-204ENST00000611712 CFAP100Q494V2 611 aa10.11□□□□□ -0.79
LIG4-204ENST00000611712 UBE2Q2Q8WVN8 375 aa10.11□□□□□ -0.79
LIG4-204ENST00000611712 ABCF2Q9UG63 623 aa10.11□□□□□ -0.79
LIG4-204ENST00000611712 DBNLQ9UJU6 430 aaKnown RBP10.11□□□□□ -0.79
LIG4-204ENST00000611712 TECPR2O15040 1411 aa10.11□□□□□ -0.79
LIG4-204ENST00000611712 SETD1BQ9UPS6 1966 aaKnown RBP10.11□□□□□ -0.79
LIG4-204ENST00000611712 NECTIN1Q15223 517 aa10.11□□□□□ -0.79
LIG4-204ENST00000611712 ZNF589Q86UQ0 364 aaPredicted RBP10.11□□□□□ -0.79
LIG4-204ENST00000611712 PIBF1Q8WXW3 757 aa10.11□□□□□ -0.79
LIG4-204ENST00000611712 MRPS27Q92552 414 aaKnown RBP10.11□□□□□ -0.79
LIG4-204ENST00000611712 UBAC1Q9BSL1 405 aa10.11□□□□□ -0.79
LIG4-204ENST00000611712 HELLSQ9NRZ9 838 aa10.11□□□□□ -0.79
LIG4-204ENST00000611712 ANKARQ7Z5J8 1434 aa10.11□□□□□ -0.79
LIG4-204ENST00000611712 TAF5LO75529 589 aa10.11□□□□□ -0.79
LIG4-204ENST00000611712 MTX1Q13505 466 aa10.11□□□□□ -0.79
LIG4-204ENST00000611712 IL25Q9H293 177 aa10.11□□□□□ -0.79
LIG4-204ENST00000611712 BRMS1Q9HCU9 246 aa10.11□□□□□ -0.79
LIG4-204ENST00000611712 COPRSQ9NQ92 184 aa10.11□□□□□ -0.79
LIG4-204ENST00000611712 IFIT3O14879 490 aaKnown RBP10.1□□□□□ -0.79
LIG4-204ENST00000611712 MAP3K12Q12852 859 aa10.1□□□□□ -0.79
LIG4-204ENST00000611712 SLC9C2Q5TAH2 1124 aa10.1□□□□□ -0.79
LIG4-204ENST00000611712 TEX13AQ9BXU3 409 aaPredicted RBP10.1□□□□□ -0.79
LIG4-204ENST00000611712 GOLGA8AA7E2F4 631 aa10.1□□□□□ -0.79
LIG4-204ENST00000611712 METAP2P50579 478 aaKnown RBP eCLIP10.1□□□□□ -0.79
LIG4-204ENST00000611712 FAM177A1Q8N128 213 aaPredicted RBP10.1□□□□□ -0.79
LIG4-204ENST00000611712 GTF3C6Q969F1 213 aa10.1□□□□□ -0.79
LIG4-204ENST00000611712 FAM89AQ96GI7 184 aa10.1□□□□□ -0.79
LIG4-204ENST00000611712 CBX8Q9HC52 389 aa10.1□□□□□ -0.79
LIG4-204ENST00000611712 SLC12A7Q9Y666 1083 aa10.1□□□□□ -0.79
LIG4-204ENST00000611712 REREQ9P2R6 1566 aa10.1□□□□□ -0.79
LIG4-204ENST00000611712 IARSP41252 1262 aaKnown RBP10.1□□□□□ -0.79
LIG4-204ENST00000611712 CBX1P83916 185 aa10.1□□□□□ -0.79
LIG4-204ENST00000611712 ANKRD20A12PQ8NF67 263 aa10.1□□□□□ -0.79
LIG4-204ENST00000611712 CLSTN2Q9H4D0 955 aa10.1□□□□□ -0.79
LIG4-204ENST00000611712 RAI14Q9P0K7 980 aa10.1□□□□□ -0.79
LIG4-204ENST00000611712 MTMR7Q9Y216 660 aa10.1□□□□□ -0.79
LIG4-204ENST00000611712 NEMFO60524 1076 aa10.09□□□□□ -0.79
LIG4-204ENST00000611712 TSR1Q2NL82 804 aaKnown RBP10.09□□□□□ -0.79
LIG4-204ENST00000611712 TMEM67Q5HYA8 995 aa10.09□□□□□ -0.79
LIG4-204ENST00000611712 AOPEPQ8N6M6 819 aa10.09□□□□□ -0.79
LIG4-204ENST00000611712 TTC14Q96N46 770 aa10.09□□□□□ -0.79
LIG4-204ENST00000611712 GNL3LQ9NVN8 582 aaKnown RBP10.09□□□□□ -0.79
LIG4-204ENST00000611712 KAT6BQ8WYB5 2073 aa10.09□□□□□ -0.79
LIG4-204ENST00000611712 KIF20BQ96Q89 1820 aa10.09□□□□□ -0.79
LIG4-204ENST00000611712 MINDY4BA8MYZ0 360 aa10.09□□□□□ -0.79
LIG4-204ENST00000611712 TULP1O00294 542 aaPredicted RBP10.09□□□□□ -0.79
LIG4-204ENST00000611712 CBFA2T2O43439 604 aa10.09□□□□□ -0.79
LIG4-204ENST00000611712 IL2RBP14784 551 aa10.09□□□□□ -0.79
LIG4-204ENST00000611712 IGHMBP2P38935 993 aaKnown RBP10.09□□□□□ -0.79
LIG4-204ENST00000611712 TTF1Q15361 905 aaPredicted RBP10.09□□□□□ -0.79
LIG4-204ENST00000611712 KCNG4Q8TDN1 519 aa10.09□□□□□ -0.79
LIG4-204ENST00000611712 WASF1Q92558 559 aa10.09□□□□□ -0.79
LIG4-204ENST00000611712 SKILP12757 684 aa10.09□□□□□ -0.79
LIG4-204ENST00000611712 MARCKSP29966 332 aaPredicted RBP10.09□□□□□ -0.79
LIG4-204ENST00000611712 TERF1P54274 439 aa10.09□□□□□ -0.79
LIG4-204ENST00000611712 DHX8Q14562 1220 aaKnown RBP10.09□□□□□ -0.79
LIG4-204ENST00000611712 CCDC191Q8NCU4 936 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms