RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, human

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM3-223	ENST00000611659	BMS1	Q14692	1282 aa	Known RBP	13.96	□□□□□ -0.18
TPM3-223	ENST00000611659	PROSER3	Q2NL68	480 aa		13.96	□□□□□ -0.18
TPM3-223	ENST00000611659	SUCLG2	Q96I99	432 aa		13.96	□□□□□ -0.18
TPM3-223	ENST00000611659	NAT10	Q9H0A0	1025 aa	Known RBP	13.96	□□□□□ -0.18
TPM3-223	ENST00000611659	ERBB3	P21860	1342 aa		13.96	□□□□□ -0.18
TPM3-223	ENST00000611659	ADGRL3	Q9HAR2	1447 aa		13.96	□□□□□ -0.18
TPM3-223	ENST00000611659	GSDMD	P57764	484 aa		13.95	□□□□□ -0.18
TPM3-223	ENST00000611659	KRT32	Q14532	448 aa		13.95	□□□□□ -0.18
TPM3-223	ENST00000611659	ARHGAP29	Q52LW3	1261 aa		13.95	□□□□□ -0.18
TPM3-223	ENST00000611659	E4F1	Q66K89	784 aa	Predicted RBP	13.95	□□□□□ -0.18
TPM3-223	ENST00000611659	DBF4	Q9UBU7	674 aa	Predicted RBP	13.95	□□□□□ -0.18
TPM3-223	ENST00000611659	KIF2A	O00139	706 aa	Predicted RBP	13.95	□□□□□ -0.18
TPM3-223	ENST00000611659	BIN1	O00499	593 aa		13.95	□□□□□ -0.18
TPM3-223	ENST00000611659	PPP1R13B	Q96KQ4	1090 aa		13.95	□□□□□ -0.18
TPM3-223	ENST00000611659	SEC62	Q99442	399 aa	Known RBP	13.95	□□□□□ -0.18
TPM3-223	ENST00000611659	DNAJC2	Q99543	621 aa	Known RBP	13.95	□□□□□ -0.18
TPM3-223	ENST00000611659	IFNK	Q9P0W0	207 aa		13.95	□□□□□ -0.18
TPM3-223	ENST00000611659	TECPR2	O15040	1411 aa		13.95	□□□□□ -0.18
TPM3-223	ENST00000611659		A0A1B0GVL5	298 aa		13.94	□□□□□ -0.18
TPM3-223	ENST00000611659	POLR3G	O15318	223 aa	Predicted RBP	13.94	□□□□□ -0.18
TPM3-223	ENST00000611659	SFPQ	P23246	707 aa	Known RBP eCLIP	13.94	□□□□□ -0.18
TPM3-223	ENST00000611659	CLCN6	P51797	869 aa		13.94	□□□□□ -0.18
TPM3-223	ENST00000611659	FAM160A1	Q05DH4	1040 aa		13.94	□□□□□ -0.18
TPM3-223	ENST00000611659	SLFNL1	Q499Z3	407 aa		13.94	□□□□□ -0.18
TPM3-223	ENST00000611659	MPRIP	Q6WCQ1	1025 aa		13.94	□□□□□ -0.18
TPM3-223	ENST00000611659	XPO4	Q9C0E2	1151 aa	Known RBP	13.94	□□□□□ -0.18
TPM3-223	ENST00000611659	CALCOCO1	Q9P1Z2	691 aa		13.94	□□□□□ -0.18
TPM3-223	ENST00000611659	ADD1	P35611	737 aa	Known RBP	13.94	□□□□□ -0.18
TPM3-223	ENST00000611659	NBPF11	Q86T75	865 aa		13.94	□□□□□ -0.18
TPM3-223	ENST00000611659	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	13.94	□□□□□ -0.18
TPM3-223	ENST00000611659	RCOR1	Q9UKL0	485 aa		13.94	□□□□□ -0.18
TPM3-223	ENST00000611659	MED23	Q9ULK4	1368 aa		13.93	□□□□□ -0.18
TPM3-223	ENST00000611659	PTPDC1	A2A3K4	754 aa		13.93	□□□□□ -0.18
TPM3-223	ENST00000611659	NCOA5	Q9HCD5	579 aa	Known RBP	13.93	□□□□□ -0.18
TPM3-223	ENST00000611659	GRM8	O00222	908 aa		13.93	□□□□□ -0.18
TPM3-223	ENST00000611659	APOBR	Q0VD83	1088 aa		13.93	□□□□□ -0.18
TPM3-223	ENST00000611659	ABTB2	Q8N961	1025 aa		13.93	□□□□□ -0.18
TPM3-223	ENST00000611659	ZNF396	Q96N95	335 aa	Predicted RBP	13.93	□□□□□ -0.18
TPM3-223	ENST00000611659	FAM53C	Q9NYF3	392 aa		13.93	□□□□□ -0.18
TPM3-223	ENST00000611659	DNAI1	Q9UI46	699 aa		13.93	□□□□□ -0.18
TPM3-223	ENST00000611659	HDAC5	Q9UQL6	1122 aa		13.93	□□□□□ -0.18
TPM3-223	ENST00000611659	PRAMEF22	A3QJZ6	481 aa		13.93	□□□□□ -0.18
TPM3-223	ENST00000611659	NRDC	O43847	1150 aa		13.93	□□□□□ -0.18
TPM3-223	ENST00000611659	ALDH1L1	O75891	902 aa		13.93	□□□□□ -0.18
TPM3-223	ENST00000611659	CYP21A2	P08686	494 aa		13.93	□□□□□ -0.18
TPM3-223	ENST00000611659	SF3A1	Q15459	793 aa	Known RBP	13.93	□□□□□ -0.18
TPM3-223	ENST00000611659	DPCR1	Q3MIW9	517 aa		13.93	□□□□□ -0.18
TPM3-223	ENST00000611659	ISM2	Q6H9L7	571 aa		13.93	□□□□□ -0.18
TPM3-223	ENST00000611659	KSR2	Q6VAB6	950 aa		13.93	□□□□□ -0.18
TPM3-223	ENST00000611659	TAOK2	Q9UL54	1235 aa		13.93	□□□□□ -0.18
TPM3-223	ENST00000611659	TNR	Q92752	1358 aa		13.92	□□□□□ -0.18
TPM3-223	ENST00000611659	ARMCX5	Q6P1M9	558 aa		13.92	□□□□□ -0.18
TPM3-223	ENST00000611659	CRYBG1	Q9Y4K1	1723 aa		13.92	□□□□□ -0.18
TPM3-223	ENST00000611659	NSUN7	Q8NE18	718 aa	Known RBP	13.92	□□□□□ -0.18
TPM3-223	ENST00000611659	UBXN4	Q92575	508 aa		13.92	□□□□□ -0.18
TPM3-223	ENST00000611659	CHMP4A	Q9BY43	222 aa		13.92	□□□□□ -0.18
TPM3-223	ENST00000611659	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	13.92	□□□□□ -0.18	1e-10	■■■□□ 17.4
TPM3-223	ENST00000611659	FHOD1	Q9Y613	1164 aa		13.92	□□□□□ -0.18
TPM3-223	ENST00000611659	PNMA6A	P0CW24	399 aa	Predicted RBP	13.91	□□□□□ -0.18
TPM3-223	ENST00000611659	H2AFX	P16104	143 aa	Predicted RBP	13.91	□□□□□ -0.18
TPM3-223	ENST00000611659	TSGA10IP	Q3SY00	556 aa		13.91	□□□□□ -0.18
TPM3-223	ENST00000611659	FAM177A1	Q8N128	213 aa	Predicted RBP	13.91	□□□□□ -0.18
TPM3-223	ENST00000611659	MNS1	Q8NEH6	495 aa		13.91	□□□□□ -0.18
TPM3-223	ENST00000611659	ENGASE	Q8NFI3	743 aa		13.91	□□□□□ -0.18
TPM3-223	ENST00000611659	KAZALD1	Q96I82	304 aa		13.91	□□□□□ -0.18
TPM3-223	ENST00000611659	SNRK	Q9NRH2	765 aa		13.91	□□□□□ -0.18
TPM3-223	ENST00000611659	CACNA1F	O60840	1977 aa		13.91	□□□□□ -0.18
TPM3-223	ENST00000611659	TMCO3	Q6UWJ1	677 aa		13.91	□□□□□ -0.18
TPM3-223	ENST00000611659	CHST3	Q7LGC8	479 aa		13.91	□□□□□ -0.18
TPM3-223	ENST00000611659	HOXB7	P09629	217 aa		13.9	□□□□□ -0.18
TPM3-223	ENST00000611659	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.9	□□□□□ -0.18
TPM3-223	ENST00000611659	CCDC150	Q8NCX0	1101 aa		13.9	□□□□□ -0.18
TPM3-223	ENST00000611659	MRPS27	Q92552	414 aa	Known RBP	13.9	□□□□□ -0.18
TPM3-223	ENST00000611659	OSBPL5	Q9H0X9	879 aa	Predicted RBP	13.9	□□□□□ -0.18
TPM3-223	ENST00000611659	L2HGDH	Q9H9P8	463 aa		13.9	□□□□□ -0.18
TPM3-223	ENST00000611659	PCDHA7	Q9UN72	937 aa		13.9	□□□□□ -0.18
TPM3-223	ENST00000611659	COL15A1	P39059	1388 aa		13.9	□□□□□ -0.18
TPM3-223	ENST00000611659	TMEM2	Q9UHN6	1383 aa		13.9	□□□□□ -0.18
TPM3-223	ENST00000611659	LRRC37A3	O60309	1634 aa		13.9	□□□□□ -0.18
TPM3-223	ENST00000611659	NALCN	Q8IZF0	1738 aa		13.9	□□□□□ -0.18
TPM3-223	ENST00000611659	FMN2	Q9NZ56	1722 aa		13.9	□□□□□ -0.18
TPM3-223	ENST00000611659	URI1	O94763	535 aa	Predicted RBP	13.9	□□□□□ -0.18
TPM3-223	ENST00000611659	LMOD1	P29536	600 aa	Predicted RBP	13.9	□□□□□ -0.18
TPM3-223	ENST00000611659	NDUFA8	P51970	172 aa		13.9	□□□□□ -0.18
TPM3-223	ENST00000611659	NAA16	Q6N069	864 aa	Predicted RBP	13.9	□□□□□ -0.18
TPM3-223	ENST00000611659	DDX46	Q7L014	1031 aa	Known RBP	13.9	□□□□□ -0.18
TPM3-223	ENST00000611659	ARGLU1	Q9NWB6	273 aa	Predicted RBP	13.9	□□□□□ -0.18
TPM3-223	ENST00000611659	IMPACT	Q9P2X3	320 aa		13.9	□□□□□ -0.18
TPM3-223	ENST00000611659	CTDNEP1	O95476	244 aa		13.9	□□□□□ -0.18
TPM3-223	ENST00000611659	HNRNPH2	P55795	449 aa	Known RBP	13.9	□□□□□ -0.18
TPM3-223	ENST00000611659		U3KPZ7	1027 aa	Predicted RBP	13.9	□□□□□ -0.18
TPM3-223	ENST00000611659	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.89	□□□□□ -0.19
TPM3-223	ENST00000611659	POLR3D	P05423	398 aa	Predicted RBP	13.89	□□□□□ -0.19
TPM3-223	ENST00000611659	TPM4	P67936	248 aa		13.89	□□□□□ -0.19
TPM3-223	ENST00000611659	USPL1	Q5W0Q7	1092 aa		13.89	□□□□□ -0.19
TPM3-223	ENST00000611659	OTUD7B	Q6GQQ9	843 aa		13.89	□□□□□ -0.19
TPM3-223	ENST00000611659	SMARCC2	Q8TAQ2	1214 aa		13.89	□□□□□ -0.19
TPM3-223	ENST00000611659	PFKFB2	O60825	505 aa		13.89	□□□□□ -0.19
TPM3-223	ENST00000611659	SEC31A	O94979	1220 aa	Known RBP	13.89	□□□□□ -0.19
TPM3-223	ENST00000611659	CYP2C19	P33261	490 aa		13.89	□□□□□ -0.19

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