RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 ANKRD2Q9GZV1 360 aa24.33■■□□□ 1.49
UPF1-212ENST00000601689 ZNRF3Q9ULT6 936 aa24.33■■□□□ 1.49
UPF1-212ENST00000601689 UTYO14607 1347 aa24.33■■□□□ 1.48
UPF1-212ENST00000601689 UFL1O94874 794 aa24.32■■□□□ 1.48
UPF1-212ENST00000601689 NBPF7P0C2Y1 421 aaPredicted RBP24.32■■□□□ 1.48
UPF1-212ENST00000601689 SPEF2Q9C093 1822 aa24.31■■□□□ 1.48
UPF1-212ENST00000601689 TBC1D16Q8TBP0 767 aa24.31■■□□□ 1.48
UPF1-212ENST00000601689 GJA3Q9Y6H8 435 aa24.31■■□□□ 1.48
UPF1-212ENST00000601689 WDR90Q96KV7 1748 aa24.3■■□□□ 1.48
UPF1-212ENST00000601689 LMOD1P29536 600 aaPredicted RBP24.3■■□□□ 1.48
UPF1-212ENST00000601689 TNIP1Q15025 636 aa24.3■■□□□ 1.48
UPF1-212ENST00000601689 ZKSCAN2Q63HK3 967 aa24.3■■□□□ 1.48
UPF1-212ENST00000601689 ATF7IPQ6VMQ6 1270 aa24.3■■□□□ 1.48
UPF1-212ENST00000601689 SUCLG2Q96I99 432 aa24.3■■□□□ 1.48
UPF1-212ENST00000601689 POLLQ9UGP5 575 aa24.3■■□□□ 1.48
UPF1-212ENST00000601689 MINPP1Q9UNW1 487 aa24.3■■□□□ 1.48
UPF1-212ENST00000601689 RIMBP2O15034 1052 aa24.29■■□□□ 1.48
UPF1-212ENST00000601689 BCAR3O75815 825 aa24.29■■□□□ 1.48
UPF1-212ENST00000601689 UBTFL1P0CB47 393 aaPredicted RBP24.29■■□□□ 1.48
UPF1-212ENST00000601689 KCNJ4P48050 445 aa24.29■■□□□ 1.48
UPF1-212ENST00000601689 USP44Q9H0E7 712 aa24.29■■□□□ 1.48
UPF1-212ENST00000601689 SCN4AP35499 1836 aa24.28■■□□□ 1.48
UPF1-212ENST00000601689 LDHAL6AQ6ZMR3 332 aa24.28■■□□□ 1.48
UPF1-212ENST00000601689 SLC51AQ86UW1 340 aa24.28■■□□□ 1.48
UPF1-212ENST00000601689 RBM46Q8TBY0 533 aaKnown RBP24.28■■□□□ 1.48
UPF1-212ENST00000601689 L3MBTL3Q96JM7 780 aaPredicted RBP24.28■■□□□ 1.48
UPF1-212ENST00000601689 CNNM1Q9NRU3 951 aa24.28■■□□□ 1.48
UPF1-212ENST00000601689 LEMD3Q9Y2U8 911 aa24.28■■□□□ 1.48
UPF1-212ENST00000601689 ZNF541Q9H0D2 1346 aa24.28■■□□□ 1.48
UPF1-212ENST00000601689 CIAPIN1Q6FI81 312 aa24.27■■□□□ 1.48
UPF1-212ENST00000601689 BICC1Q9H694 974 aaKnown RBP24.27■■□□□ 1.48
UPF1-212ENST00000601689 EPHA10Q5JZY3 1008 aa24.26■■□□□ 1.47
UPF1-212ENST00000601689 FTSJ3Q8IY81 847 aaKnown RBP24.26■■□□□ 1.47
UPF1-212ENST00000601689 HACL1Q9UJ83 578 aa24.26■■□□□ 1.47
UPF1-212ENST00000601689 GNAI3P08754 354 aa24.25■■□□□ 1.47
UPF1-212ENST00000601689 INTS3Q68E01 1043 aaKnown RBP24.25■■□□□ 1.47
UPF1-212ENST00000601689 SMC1BQ8NDV3 1235 aa24.25■■□□□ 1.47
UPF1-212ENST00000601689 TRIM27P14373 513 aa24.24■■□□□ 1.47
UPF1-212ENST00000601689 CHRNDQ07001 517 aa24.24■■□□□ 1.47
UPF1-212ENST00000601689 FSTL1Q12841 308 aa24.24■■□□□ 1.47
UPF1-212ENST00000601689 RABL6Q3YEC7 729 aaPredicted RBP24.24■■□□□ 1.47
UPF1-212ENST00000601689 PNMA8AQ86V59 439 aaPredicted RBP24.24■■□□□ 1.47
UPF1-212ENST00000601689 DBNDD1Q9H9R9 158 aa24.24■■□□□ 1.47
UPF1-212ENST00000601689 MS4A1P11836 297 aa24.23■■□□□ 1.47
UPF1-212ENST00000601689 CXCL9Q07325 125 aa24.23■■□□□ 1.47
UPF1-212ENST00000601689 DUOX1Q9NRD9 1551 aa24.23■■□□□ 1.47
UPF1-212ENST00000601689 COL4A1P02462 1669 aa24.23■■□□□ 1.47
UPF1-212ENST00000601689 LTBP1Q14766 1721 aa24.22■■□□□ 1.47
UPF1-212ENST00000601689 ZNF804BA4D1E1 1349 aa24.22■■□□□ 1.47
UPF1-212ENST00000601689 ECE2O60344 883 aa24.22■■□□□ 1.47
UPF1-212ENST00000601689 RAD17O75943 681 aa24.22■■□□□ 1.47
UPF1-212ENST00000601689 DOK7Q18PE1 504 aa24.22■■□□□ 1.47
UPF1-212ENST00000601689 CLUAP1Q96AJ1 413 aa24.22■■□□□ 1.47
UPF1-212ENST00000601689 KAZALD1Q96I82 304 aa24.21■■□□□ 1.47
UPF1-212ENST00000601689 MED23Q9ULK4 1368 aa24.2■■□□□ 1.46
UPF1-212ENST00000601689 EPHX2P34913 555 aa24.2■■□□□ 1.46
UPF1-212ENST00000601689 PODNQ7Z5L7 613 aa24.2■■□□□ 1.46
UPF1-212ENST00000601689 ZNF594Q96JF6 807 aaPredicted RBP24.2■■□□□ 1.46
UPF1-212ENST00000601689 TAF1DQ9H5J8 278 aaPredicted RBP24.2■■□□□ 1.46
UPF1-212ENST00000601689 COL4A5P29400 1685 aa24.2■■□□□ 1.46
UPF1-212ENST00000601689 POTECB2RU33 542 aa24.19■■□□□ 1.46
UPF1-212ENST00000601689 EAPPQ56P03 285 aaPredicted RBP24.19■■□□□ 1.46
UPF1-212ENST00000601689 DZIP1LQ8IYY4 767 aaKnown RBP24.19■■□□□ 1.46
UPF1-212ENST00000601689 GPR101Q96P66 508 aaPredicted RBP24.19■■□□□ 1.46
UPF1-212ENST00000601689 CLEC11AQ9Y240 323 aa24.19■■□□□ 1.46
UPF1-212ENST00000601689 MROH5Q6ZUA9 1318 aa24.18■■□□□ 1.46
UPF1-212ENST00000601689 PLIN1O60240 522 aa24.18■■□□□ 1.46
UPF1-212ENST00000601689 COA1Q9GZY4 146 aa24.18■■□□□ 1.46
UPF1-212ENST00000601689 H7C1D1 291 aa24.17■■□□□ 1.46
UPF1-212ENST00000601689 LDHDQ86WU2 507 aa24.17■■□□□ 1.46
UPF1-212ENST00000601689 ANKRD44Q8N8A2 993 aa24.17■■□□□ 1.46
UPF1-212ENST00000601689 YDJCA8MPS7 323 aa24.16■■□□□ 1.46
UPF1-212ENST00000601689 RPS12P25398 132 aaKnown RBP24.16■■□□□ 1.46
UPF1-212ENST00000601689 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.16■■□□□ 1.46
UPF1-212ENST00000601689 MEIS3Q99687 375 aa24.16■■□□□ 1.46
UPF1-212ENST00000601689 RCAN3Q9UKA8 241 aa24.16■■□□□ 1.46
UPF1-212ENST00000601689 LRRFIP2Q9Y608 721 aaKnown RBP24.16■■□□□ 1.46
UPF1-212ENST00000601689 TAF5LO75529 589 aa24.15■■□□□ 1.46
UPF1-212ENST00000601689 GNAI2P04899 355 aa24.15■■□□□ 1.46
UPF1-212ENST00000601689 CHADLQ6NUI6 762 aa24.15■■□□□ 1.46
UPF1-212ENST00000601689 USP50Q70EL3 339 aaPredicted RBP24.15■■□□□ 1.46
UPF1-212ENST00000601689 HELBQ8NG08 1087 aaPredicted RBP24.15■■□□□ 1.46
UPF1-212ENST00000601689 ADARB2Q9NS39 739 aaKnown RBP24.15■■□□□ 1.46
UPF1-212ENST00000601689 GPRC5DQ9NZD1 345 aa24.15■■□□□ 1.46
UPF1-212ENST00000601689 PSMD14O00487 310 aa24.14■■□□□ 1.45
UPF1-212ENST00000601689 HSPA6P17066 643 aa24.14■■□□□ 1.45
UPF1-212ENST00000601689 GMPSP49915 693 aaPredicted RBP24.14■■□□□ 1.45
UPF1-212ENST00000601689 SCNN1DP51172 638 aa24.14■■□□□ 1.45
UPF1-212ENST00000601689 METTL24Q5JXM2 366 aa24.14■■□□□ 1.45
UPF1-212ENST00000601689 ZNF804AQ7Z570 1209 aa24.14■■□□□ 1.45
UPF1-212ENST00000601689 TMEM57Q8N5G2 664 aa24.14■■□□□ 1.45
UPF1-212ENST00000601689 DPF2Q92785 391 aa24.14■■□□□ 1.45
UPF1-212ENST00000601689 FBXO3Q9UK99 471 aa24.14■■□□□ 1.45
UPF1-212ENST00000601689 USP17L3A6NCW0 530 aa24.13■■□□□ 1.45
UPF1-212ENST00000601689 USP17L4A6NCW7 530 aa24.13■■□□□ 1.45
UPF1-212ENST00000601689 UBE4AQ14139 1066 aa24.13■■□□□ 1.45
UPF1-212ENST00000601689 USP17L1Q7RTZ2 530 aa24.13■■□□□ 1.45
UPF1-212ENST00000601689 ITPRIPQ8IWB1 547 aa24.13■■□□□ 1.45
UPF1-212ENST00000601689 FBXW7Q969H0 707 aa24.12■■□□□ 1.45
UPF1-212ENST00000601689 CNOT7Q9UIV1 285 aaKnown RBP24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms