RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 COL11A2P13942 1736 aaPredicted RBP13.23□□□□□ -0.29
SS18-213ENST00000579640 SMARCA5O60264 1052 aaPredicted RBP13.23□□□□□ -0.29
SS18-213ENST00000579640 PTGER2P43116 358 aa13.23□□□□□ -0.29
SS18-213ENST00000579640 TFCP2Q12800 502 aa13.23□□□□□ -0.29
SS18-213ENST00000579640 METTL24Q5JXM2 366 aa13.23□□□□□ -0.29
SS18-213ENST00000579640 AKAP2Q9Y2D5 859 aa13.23□□□□□ -0.29
SS18-213ENST00000579640 IL1RAPL2Q9NP60 686 aa13.22□□□□□ -0.29
SS18-213ENST00000579640 TAF1P21675 1872 aa13.22□□□□□ -0.29
SS18-213ENST00000579640 TGFB2P61812 414 aa13.21□□□□□ -0.29
SS18-213ENST00000579640 CNKSR1Q969H4 720 aa13.21□□□□□ -0.29
SS18-213ENST00000579640 ANKRD2Q9GZV1 360 aa13.21□□□□□ -0.29
SS18-213ENST00000579640 COL4A1P02462 1669 aa13.21□□□□□ -0.29
SS18-213ENST00000579640 DLEC1Q9Y238 1755 aa13.21□□□□□ -0.3
SS18-213ENST00000579640 PDE8BO95263 885 aa13.2□□□□□ -0.3
SS18-213ENST00000579640 TNNI3KQ59H18 835 aa13.2□□□□□ -0.3
SS18-213ENST00000579640 VGLL2Q8N8G2 317 aa13.2□□□□□ -0.3
SS18-213ENST00000579640 MINPP1Q9UNW1 487 aa13.2□□□□□ -0.3
SS18-213ENST00000579640 CD2APQ9Y5K6 639 aa13.2□□□□□ -0.3
SS18-213ENST00000579640 FPGT-TNNI3KV9GXZ4 949 aa13.2□□□□□ -0.3
SS18-213ENST00000579640 IFIT2P09913 472 aaKnown RBP13.2□□□□□ -0.3
SS18-213ENST00000579640 PDE4AP27815 886 aa13.2□□□□□ -0.3
SS18-213ENST00000579640 CHRNDQ07001 517 aa13.2□□□□□ -0.3
SS18-213ENST00000579640 AACSQ86V21 672 aa13.2□□□□□ -0.3
SS18-213ENST00000579640 ZNF622Q969S3 477 aaKnown RBP eCLIP13.2□□□□□ -0.34e-7■□□□□ 10.6
SS18-213ENST00000579640 ZNF609O15014 1411 aa13.2□□□□□ -0.3
SS18-213ENST00000579640 PPEF1O14829 653 aaPredicted RBP13.19□□□□□ -0.3
SS18-213ENST00000579640 EAF2Q96CJ1 260 aaPredicted RBP13.19□□□□□ -0.3
SS18-213ENST00000579640 A0A1B0GUL6 1792 aa13.19□□□□□ -0.3
SS18-213ENST00000579640 LRRC37AA6NMS7 1700 aa13.18□□□□□ -0.3
SS18-213ENST00000579640 CHRNA5P30532 468 aa13.18□□□□□ -0.3
SS18-213ENST00000579640 RGS3P49796 1198 aa13.18□□□□□ -0.3
SS18-213ENST00000579640 PUM3Q15397 648 aaKnown RBP13.18□□□□□ -0.3
SS18-213ENST00000579640 ATP2B3Q16720 1220 aa13.18□□□□□ -0.3
SS18-213ENST00000579640 SP8Q8IXZ3 490 aa13.18□□□□□ -0.3
SS18-213ENST00000579640 GPATCH3Q96I76 525 aa13.18□□□□□ -0.3
SS18-213ENST00000579640 SALL3Q9BXA9 1300 aa13.18□□□□□ -0.3
SS18-213ENST00000579640 TMX4Q9H1E5 349 aaPredicted RBP13.18□□□□□ -0.3
SS18-213ENST00000579640 AOX1Q06278 1338 aa13.18□□□□□ -0.3
SS18-213ENST00000579640 TTC41PQ6P2S7 1318 aa13.18□□□□□ -0.3
SS18-213ENST00000579640 MX1P20591 662 aa13.18□□□□□ -0.3
SS18-213ENST00000579640 PLEKHM2Q8IWE5 1019 aa13.18□□□□□ -0.3
SS18-213ENST00000579640 C16orf71Q8IYS4 520 aaPredicted RBP13.18□□□□□ -0.3
SS18-213ENST00000579640 LPIN2Q92539 896 aa13.18□□□□□ -0.3
SS18-213ENST00000579640 OSBPL3Q9H4L5 887 aa13.18□□□□□ -0.3
SS18-213ENST00000579640 STAP2Q9UGK3 403 aa13.18□□□□□ -0.3
SS18-213ENST00000579640 ATP6V0A2Q9Y487 856 aa13.18□□□□□ -0.3
SS18-213ENST00000579640 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.18□□□□□ -0.3
SS18-213ENST00000579640 XDHP47989 1333 aa13.17□□□□□ -0.3
SS18-213ENST00000579640 A0A1B0GUL7 405 aa13.17□□□□□ -0.3
SS18-213ENST00000579640 SLC5A1P13866 664 aa13.17□□□□□ -0.3
SS18-213ENST00000579640 DPEP1P16444 411 aa13.17□□□□□ -0.3
SS18-213ENST00000579640 FGFR2P21802 821 aa13.17□□□□□ -0.3
SS18-213ENST00000579640 UBE4AQ14139 1066 aa13.17□□□□□ -0.3
SS18-213ENST00000579640 BCL11AQ9H165 835 aa13.17□□□□□ -0.3
SS18-213ENST00000579640 KIAA1551Q9HCM1 1747 aa13.17□□□□□ -0.3
SS18-213ENST00000579640 ARAP2Q8WZ64 1704 aa13.16□□□□□ -0.3
SS18-213ENST00000579640 TAF5LO75529 589 aa13.16□□□□□ -0.3
SS18-213ENST00000579640 IFIT1P09914 478 aaKnown RBP13.16□□□□□ -0.3
SS18-213ENST00000579640 PDE1AP54750 535 aa13.16□□□□□ -0.3
SS18-213ENST00000579640 CC2D2BQ6DHV5 1058 aa13.16□□□□□ -0.3
SS18-213ENST00000579640 TTLL6Q8N841 843 aa13.16□□□□□ -0.3
SS18-213ENST00000579640 HELBQ8NG08 1087 aaPredicted RBP13.16□□□□□ -0.3
SS18-213ENST00000579640 OTUD7AQ8TE49 926 aaPredicted RBP13.16□□□□□ -0.3
SS18-213ENST00000579640 NEUROD6Q96NK8 337 aa13.16□□□□□ -0.3
SS18-213ENST00000579640 CCDC8Q9H0W5 538 aaPredicted RBP13.16□□□□□ -0.3
SS18-213ENST00000579640 LEMD3Q9Y2U8 911 aa13.16□□□□□ -0.3
SS18-213ENST00000579640 ERC2O15083 957 aa13.16□□□□□ -0.3
SS18-213ENST00000579640 TIMM10P62072 90 aa13.16□□□□□ -0.3
SS18-213ENST00000579640 PRPF40BQ6NWY9 871 aaKnown RBP13.16□□□□□ -0.3
SS18-213ENST00000579640 SKAP1Q86WV1 359 aa13.16□□□□□ -0.3
SS18-213ENST00000579640 ECHDC1Q9NTX5 307 aa13.16□□□□□ -0.3
SS18-213ENST00000579640 PODXL2Q9NZ53 605 aa13.16□□□□□ -0.3
SS18-213ENST00000579640 ANKIB1Q9P2G1 1089 aa13.16□□□□□ -0.3
SS18-213ENST00000579640 DBNLQ9UJU6 430 aaKnown RBP13.16□□□□□ -0.3
SS18-213ENST00000579640 CACNA1SQ13698 1873 aa13.15□□□□□ -0.3
SS18-213ENST00000579640 A0A0G2JLW4 131 aa13.15□□□□□ -0.3
SS18-213ENST00000579640 KCNA3P22001 575 aa13.15□□□□□ -0.3
SS18-213ENST00000579640 KCNJ4P48050 445 aa13.15□□□□□ -0.3
SS18-213ENST00000579640 GRIPAP1Q4V328 841 aa13.15□□□□□ -0.3
SS18-213ENST00000579640 XAGE2Q96GT9 111 aa13.15□□□□□ -0.3
SS18-213ENST00000579640 DBNDD2Q9BQY9 259 aa13.15□□□□□ -0.3
SS18-213ENST00000579640 PIM2Q9P1W9 311 aa13.15□□□□□ -0.3
SS18-213ENST00000579640 PPP1R1BQ9UD71 204 aaPredicted RBP13.15□□□□□ -0.3
SS18-213ENST00000579640 SLX4Q8IY92 1834 aa13.14□□□□□ -0.31
SS18-213ENST00000579640 ZNF804BA4D1E1 1349 aa13.14□□□□□ -0.31
SS18-213ENST00000579640 ATP2B4P23634 1241 aa13.14□□□□□ -0.31
SS18-213ENST00000579640 PELP1Q8IZL8 1130 aaKnown RBP13.14□□□□□ -0.31
SS18-213ENST00000579640 KLHL34Q8N239 644 aa13.14□□□□□ -0.31
SS18-213ENST00000579640 GLRX3O76003 335 aaKnown RBP13.13□□□□□ -0.31
SS18-213ENST00000579640 GPSM2P81274 684 aa13.13□□□□□ -0.31
SS18-213ENST00000579640 CCDC158Q5M9N0 1113 aa13.13□□□□□ -0.31
SS18-213ENST00000579640 GORABQ5T7V8 394 aa13.13□□□□□ -0.31
SS18-213ENST00000579640 TLR7Q9NYK1 1049 aaKnown RBP13.13□□□□□ -0.31
SS18-213ENST00000579640 GGA1Q9UJY5 639 aa13.13□□□□□ -0.31
SS18-213ENST00000579640 NSFL1CQ9UNZ2 370 aaKnown RBP13.13□□□□□ -0.31
SS18-213ENST00000579640 TTC22Q5TAA0 569 aa13.13□□□□□ -0.31
SS18-213ENST00000579640 SOGA3Q5TF21 947 aa13.13□□□□□ -0.31
SS18-213ENST00000579640 C15orf52Q6ZUT6 534 aaKnown RBP13.13□□□□□ -0.31
SS18-213ENST00000579640 MPNDQ8N594 471 aa13.13□□□□□ -0.31
SS18-213ENST00000579640 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms