RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 GGA1Q9UJY5 639 aa30.28■■■□□ 2.44
SHMT1-206ENST00000579558 ITGA6P23229 1130 aa30.27■■■□□ 2.44
SHMT1-206ENST00000579558 LMOD1P29536 600 aaPredicted RBP30.27■■■□□ 2.44
SHMT1-206ENST00000579558 GPR101Q96P66 508 aaPredicted RBP30.27■■■□□ 2.44
SHMT1-206ENST00000579558 BSDC1Q9NW68 430 aaPredicted RBP30.27■■■□□ 2.44
SHMT1-206ENST00000579558 IGHMBP2P38935 993 aaKnown RBP30.26■■■□□ 2.43
SHMT1-206ENST00000579558 EAPPQ56P03 285 aaPredicted RBP30.26■■■□□ 2.43
SHMT1-206ENST00000579558 CIAPIN1Q6FI81 312 aa30.26■■■□□ 2.43
SHMT1-206ENST00000579558 CHADLQ6NUI6 762 aa30.26■■■□□ 2.43
SHMT1-206ENST00000579558 XDHP47989 1333 aa30.25■■■□□ 2.43
SHMT1-206ENST00000579558 RAD17O75943 681 aa30.25■■■□□ 2.43
SHMT1-206ENST00000579558 SCNN1DP51172 638 aa30.25■■■□□ 2.43
SHMT1-206ENST00000579558 LDHDQ86WU2 507 aa30.25■■■□□ 2.43
SHMT1-206ENST00000579558 DBNDD1Q9H9R9 158 aa30.25■■■□□ 2.43
SHMT1-206ENST00000579558 YDJCA8MPS7 323 aa30.24■■■□□ 2.43
SHMT1-206ENST00000579558 FOXO4P98177 505 aa30.24■■■□□ 2.43
SHMT1-206ENST00000579558 ZC3H12CQ9C0D7 883 aaKnown RBP30.24■■■□□ 2.43
SHMT1-206ENST00000579558 HNRNPUQ00839 825 aaKnown RBP eCLIP30.23■■■□□ 2.43
SHMT1-206ENST00000579558 TNIP1Q15025 636 aa30.23■■■□□ 2.43
SHMT1-206ENST00000579558 PNMA8AQ86V59 439 aaPredicted RBP30.23■■■□□ 2.43
SHMT1-206ENST00000579558 MINPP1Q9UNW1 487 aa30.23■■■□□ 2.43
SHMT1-206ENST00000579558 ATP2B4P23634 1241 aa30.22■■■□□ 2.43
SHMT1-206ENST00000579558 DOK7Q18PE1 504 aa30.22■■■□□ 2.43
SHMT1-206ENST00000579558 CHMP3Q9Y3E7 222 aa30.22■■■□□ 2.43
SHMT1-206ENST00000579558 ANKRD18BA2A2Z9 1011 aa30.21■■■□□ 2.43
SHMT1-206ENST00000579558 ECE2O60344 883 aa30.21■■■□□ 2.43
SHMT1-206ENST00000579558 EPS15P42566 896 aa30.21■■■□□ 2.43
SHMT1-206ENST00000579558 MPHOSPH8Q99549 860 aa30.21■■■□□ 2.43
SHMT1-206ENST00000579558 CLEC11AQ9Y240 323 aa30.21■■■□□ 2.43
SHMT1-206ENST00000579558 GMPSP49915 693 aaPredicted RBP30.2■■■□□ 2.43
SHMT1-206ENST00000579558 EPHA10Q5JZY3 1008 aa30.2■■■□□ 2.43
SHMT1-206ENST00000579558 LMBR1LQ6UX01 489 aa30.2■■■□□ 2.43
SHMT1-206ENST00000579558 ADAMTSL1Q8N6G6 1762 aa30.2■■■□□ 2.42
SHMT1-206ENST00000579558 G3V3G9 751 aa30.19■■■□□ 2.42
SHMT1-206ENST00000579558 IFIT5Q13325 482 aaKnown RBP30.19■■■□□ 2.42
SHMT1-206ENST00000579558 DCAF8Q5TAQ9 597 aa30.19■■■□□ 2.42
SHMT1-206ENST00000579558 GPRC5DQ9NZD1 345 aa30.19■■■□□ 2.42
SHMT1-206ENST00000579558 HTRA3P83110 453 aa30.17■■■□□ 2.42
SHMT1-206ENST00000579558 SUCLG2Q96I99 432 aa30.17■■■□□ 2.42
SHMT1-206ENST00000579558 PSMD14O00487 310 aa30.16■■■□□ 2.42
SHMT1-206ENST00000579558 NBPF7P0C2Y1 421 aaPredicted RBP30.16■■■□□ 2.42
SHMT1-206ENST00000579558 CCT4P50991 539 aaKnown RBP30.16■■■□□ 2.42
SHMT1-206ENST00000579558 UTYO14607 1347 aa30.16■■■□□ 2.42
SHMT1-206ENST00000579558 RARSP54136 660 aaKnown RBP30.15■■■□□ 2.42
SHMT1-206ENST00000579558 CCDC57Q2TAC2 916 aa30.15■■■□□ 2.42
SHMT1-206ENST00000579558 ANKRD2Q9GZV1 360 aa30.15■■■□□ 2.42
SHMT1-206ENST00000579558 NOB1Q9ULX3 412 aaKnown RBP30.15■■■□□ 2.42
SHMT1-206ENST00000579558 WTIPA6NIX2 430 aaPredicted RBP30.14■■■□□ 2.42
SHMT1-206ENST00000579558 BRPF1P55201 1214 aaPredicted RBP30.14■■■□□ 2.42
SHMT1-206ENST00000579558 USP50Q70EL3 339 aaPredicted RBP30.14■■■□□ 2.42
SHMT1-206ENST00000579558 KCNQ5Q9NR82 932 aa30.14■■■□□ 2.42
SHMT1-206ENST00000579558 ADARB2Q9NS39 739 aaKnown RBP30.14■■■□□ 2.42
SHMT1-206ENST00000579558 TAF7LQ5H9L4 462 aa30.13■■■□□ 2.41
SHMT1-206ENST00000579558 LEMD3Q9Y2U8 911 aa30.13■■■□□ 2.41
SHMT1-206ENST00000579558 ZBTB12Q9Y330 459 aaPredicted RBP30.13■■■□□ 2.41
SHMT1-206ENST00000579558 MED23Q9ULK4 1368 aa30.13■■■□□ 2.41
SHMT1-206ENST00000579558 SCN9AQ15858 1988 aa30.12■■■□□ 2.41
SHMT1-206ENST00000579558 CHRNDQ07001 517 aa30.12■■■□□ 2.41
SHMT1-206ENST00000579558 KAZALD1Q96I82 304 aa30.12■■■□□ 2.41
SHMT1-206ENST00000579558 MAP1SQ66K74 1059 aaPredicted RBP30.11■■■□□ 2.41
SHMT1-206ENST00000579558 ZNF594Q96JF6 807 aaPredicted RBP30.1■■■□□ 2.41
SHMT1-206ENST00000579558 API5Q9BZZ5 524 aaKnown RBP30.1■■■□□ 2.41
SHMT1-206ENST00000579558 CNOT7Q9UIV1 285 aaKnown RBP30.1■■■□□ 2.41
SHMT1-206ENST00000579558 ZNF804BA4D1E1 1349 aa30.09■■■□□ 2.41
SHMT1-206ENST00000579558 KCNJ4P48050 445 aa30.09■■■□□ 2.41
SHMT1-206ENST00000579558 CNTROBQ8N137 903 aa30.09■■■□□ 2.41
SHMT1-206ENST00000579558 DNAJC5GQ8N7S2 189 aa30.09■■■□□ 2.41
SHMT1-206ENST00000579558 DPF2Q92785 391 aa30.09■■■□□ 2.41
SHMT1-206ENST00000579558 PASKQ96RG2 1323 aa30.09■■■□□ 2.41
SHMT1-206ENST00000579558 USP44Q9H0E7 712 aa30.09■■■□□ 2.41
SHMT1-206ENST00000579558 BICC1Q9H694 974 aaKnown RBP30.09■■■□□ 2.41
SHMT1-206ENST00000579558 KIF16BQ96L93 1317 aa30.08■■■□□ 2.41
SHMT1-206ENST00000579558 H7C1D1 291 aa30.08■■■□□ 2.41
SHMT1-206ENST00000579558 ITGBL1O95965 494 aaPredicted RBP30.08■■■□□ 2.41
SHMT1-206ENST00000579558 RPS12P25398 132 aaKnown RBP30.08■■■□□ 2.41
SHMT1-206ENST00000579558 MICALL2Q8IY33 904 aa30.08■■■□□ 2.41
SHMT1-206ENST00000579558 SHTN1A0MZ66 631 aa30.07■■■□□ 2.4
SHMT1-206ENST00000579558 LDHAL6AQ6ZMR3 332 aa30.07■■■□□ 2.4
SHMT1-206ENST00000579558 PODNQ7Z5L7 613 aa30.07■■■□□ 2.4
SHMT1-206ENST00000579558 A0A1B0GUL6 1792 aa30.07■■■□□ 2.4
SHMT1-206ENST00000579558 PSME4Q14997 1843 aa30.06■■■□□ 2.4
SHMT1-206ENST00000579558 VIL1P09327 827 aaKnown RBP30.06■■■□□ 2.4
SHMT1-206ENST00000579558 RABL6Q3YEC7 729 aaPredicted RBP30.06■■■□□ 2.4
SHMT1-206ENST00000579558 HELBQ8NG08 1087 aaPredicted RBP30.06■■■□□ 2.4
SHMT1-206ENST00000579558 CNNM1Q9NRU3 951 aa30.06■■■□□ 2.4
SHMT1-206ENST00000579558 TXNRD3Q86VQ6 643 aa30.05■■■□□ 2.4
SHMT1-206ENST00000579558 ANKRD44Q8N8A2 993 aa30.05■■■□□ 2.4
SHMT1-206ENST00000579558 TAF5LO75529 589 aa30.04■■■□□ 2.4
SHMT1-206ENST00000579558 TRPM4Q8TD43 1214 aa30.04■■■□□ 2.4
SHMT1-206ENST00000579558 COA1Q9GZY4 146 aa30.04■■■□□ 2.4
SHMT1-206ENST00000579558 ZBED9Q6R2W3 1325 aa30.03■■■□□ 2.4
SHMT1-206ENST00000579558 KLRK1P26718 216 aa30.03■■■□□ 2.4
SHMT1-206ENST00000579558 ARHGAP45Q92619 1136 aa30.03■■■□□ 2.4
SHMT1-206ENST00000579558 KLRG1Q96E93 195 aa30.03■■■□□ 2.4
SHMT1-206ENST00000579558 CREBZFQ9NS37 354 aa30.03■■■□□ 2.4
SHMT1-206ENST00000579558 USP17L3A6NCW0 530 aa30.02■■■□□ 2.4
SHMT1-206ENST00000579558 USP17L4A6NCW7 530 aa30.02■■■□□ 2.4
SHMT1-206ENST00000579558 RSBN1LQ6PCB5 846 aaPredicted RBP30.02■■■□□ 2.4
SHMT1-206ENST00000579558 USP17L1Q7RTZ2 530 aa30.02■■■□□ 2.4
SHMT1-206ENST00000579558 SNAP23O00161 211 aa30.01■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms