RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 PCCAP05165 728 aaPredicted RBP27.24■■□□□ 1.95
VPS53-216ENST00000574029 DOK7Q18PE1 504 aa27.24■■□□□ 1.95
VPS53-216ENST00000574029 SAMD7Q7Z3H4 446 aa27.24■■□□□ 1.95
VPS53-216ENST00000574029 ZNF408Q9H9D4 720 aa27.24■■□□□ 1.95
VPS53-216ENST00000574029 KCNQ5Q9NR82 932 aa27.24■■□□□ 1.95
VPS53-216ENST00000574029 SCN9AQ15858 1988 aa27.22■■□□□ 1.95
VPS53-216ENST00000574029 USP48Q86UV5 1035 aa27.22■■□□□ 1.95
VPS53-216ENST00000574029 METTL22Q9BUU2 404 aaPredicted RBP27.22■■□□□ 1.95
VPS53-216ENST00000574029 ZC3H12CQ9C0D7 883 aaKnown RBP27.22■■□□□ 1.95
VPS53-216ENST00000574029 CWC25Q9NXE8 425 aaPredicted RBP27.22■■□□□ 1.95
VPS53-216ENST00000574029 PDE8AO60658 829 aa27.21■■□□□ 1.95
VPS53-216ENST00000574029 EGFRP00533 1210 aa27.21■■□□□ 1.95
VPS53-216ENST00000574029 CCDC152Q4G0S7 254 aa27.21■■□□□ 1.95
VPS53-216ENST00000574029 CCDC30Q5VVM6 783 aa27.21■■□□□ 1.95
VPS53-216ENST00000574029 CHMP4AQ9BY43 222 aa27.21■■□□□ 1.95
VPS53-216ENST00000574029 DDX58O95786 925 aaKnown RBP27.2■■□□□ 1.94
VPS53-216ENST00000574029 TBC1D10BQ4KMP7 808 aaPredicted RBP27.2■■□□□ 1.94
VPS53-216ENST00000574029 POLR2AP24928 1970 aaKnown RBP27.19■■□□□ 1.94
VPS53-216ENST00000574029 VIL1P09327 827 aaKnown RBP27.19■■□□□ 1.94
VPS53-216ENST00000574029 ABHD8Q96I13 439 aa27.19■■□□□ 1.94
VPS53-216ENST00000574029 UFL1O94874 794 aa27.18■■□□□ 1.94
VPS53-216ENST00000574029 BRPF1P55201 1214 aaPredicted RBP27.18■■□□□ 1.94
VPS53-216ENST00000574029 DLK2Q6UY11 383 aa27.18■■□□□ 1.94
VPS53-216ENST00000574029 JARID2Q92833 1246 aaPredicted RBP27.18■■□□□ 1.94
VPS53-216ENST00000574029 ANKIB1Q9P2G1 1089 aa27.18■■□□□ 1.94
VPS53-216ENST00000574029 GGA1Q9UJY5 639 aa27.18■■□□□ 1.94
VPS53-216ENST00000574029 PSME4Q14997 1843 aa27.18■■□□□ 1.94
VPS53-216ENST00000574029 KRT26Q7Z3Y9 468 aa27.17■■□□□ 1.94
VPS53-216ENST00000574029 TSPYL6Q8N831 410 aa27.17■■□□□ 1.94
VPS53-216ENST00000574029 MAP3K2Q9Y2U5 619 aa27.17■■□□□ 1.94
VPS53-216ENST00000574029 ZNF609O15014 1411 aa27.16■■□□□ 1.94
VPS53-216ENST00000574029 CA12O43570 354 aa27.16■■□□□ 1.94
VPS53-216ENST00000574029 RBM26Q5T8P6 1007 aaKnown RBP27.16■■□□□ 1.94
VPS53-216ENST00000574029 TSKSQ9UJT2 592 aa27.16■■□□□ 1.94
VPS53-216ENST00000574029 KSR2Q6VAB6 950 aa27.15■■□□□ 1.94
VPS53-216ENST00000574029 DCPSQ96C86 337 aaKnown RBP27.15■■□□□ 1.94
VPS53-216ENST00000574029 CCDC85AQ96PX6 553 aaPredicted RBP27.15■■□□□ 1.94
VPS53-216ENST00000574029 G3V3G9 751 aa27.14■■□□□ 1.94
VPS53-216ENST00000574029 HUNKP57058 714 aa27.14■■□□□ 1.94
VPS53-216ENST00000574029 KIF4BQ2VIQ3 1234 aa27.14■■□□□ 1.94
VPS53-216ENST00000574029 DCAF8Q5TAQ9 597 aa27.14■■□□□ 1.94
VPS53-216ENST00000574029 ANKRD18AQ8IVF6 992 aa27.14■■□□□ 1.94
VPS53-216ENST00000574029 XDHP47989 1333 aa27.14■■□□□ 1.93
VPS53-216ENST00000574029 IGKV5-2P06315 115 aa27.13■■□□□ 1.93
VPS53-216ENST00000574029 ZEB1P37275 1124 aaPredicted RBP27.13■■□□□ 1.93
VPS53-216ENST00000574029 NOGQ13253 232 aa27.13■■□□□ 1.93
VPS53-216ENST00000574029 MYH3P11055 1940 aa27.13■■□□□ 1.93
VPS53-216ENST00000574029 PI4KAP2A4QPH2 592 aa27.12■■□□□ 1.93
VPS53-216ENST00000574029 ADM5C9JUS6 153 aa27.12■■□□□ 1.93
VPS53-216ENST00000574029 PI4KAP1Q8N8J0 262 aa27.12■■□□□ 1.93
VPS53-216ENST00000574029 GBA2Q9HCG7 927 aaPredicted RBP27.12■■□□□ 1.93
VPS53-216ENST00000574029 CTSWP56202 376 aa27.11■■□□□ 1.93
VPS53-216ENST00000574029 ZNF280AP59817 542 aaPredicted RBP27.11■■□□□ 1.93
VPS53-216ENST00000574029 CCDC27Q2M243 656 aa27.11■■□□□ 1.93
VPS53-216ENST00000574029 RSBN1LQ6PCB5 846 aaPredicted RBP27.11■■□□□ 1.93
VPS53-216ENST00000574029 AGBL3Q8NEM8 1001 aa27.11■■□□□ 1.93
VPS53-216ENST00000574029 TSR2Q969E8 191 aaKnown RBP27.11■■□□□ 1.93
VPS53-216ENST00000574029 ATP2B4P23634 1241 aa27.1■■□□□ 1.93
VPS53-216ENST00000574029 CCDC184Q52MB2 194 aa27.1■■□□□ 1.93
VPS53-216ENST00000574029 RGMBQ6NW40 437 aa27.1■■□□□ 1.93
VPS53-216ENST00000574029 C2orf69Q8N8R5 385 aa27.1■■□□□ 1.93
VPS53-216ENST00000574029 ZIC5Q96T25 663 aa27.1■■□□□ 1.93
VPS53-216ENST00000574029 SPEF2Q9C093 1822 aa27.09■■□□□ 1.93
VPS53-216ENST00000574029 FAM155AB1AL88 458 aaPredicted RBP27.09■■□□□ 1.93
VPS53-216ENST00000574029 TTLL11Q8NHH1 800 aa27.09■■□□□ 1.93
VPS53-216ENST00000574029 CDC5LQ99459 802 aaKnown RBP27.09■■□□□ 1.93
VPS53-216ENST00000574029 GGA3Q9NZ52 723 aa27.09■■□□□ 1.93
VPS53-216ENST00000574029 NEXNQ0ZGT2 675 aa27.08■■□□□ 1.93
VPS53-216ENST00000574029 SULF1Q8IWU6 871 aa27.08■■□□□ 1.93
VPS53-216ENST00000574029 GMLQ99445 158 aa27.08■■□□□ 1.93
VPS53-216ENST00000574029 STK31Q9BXU1 1019 aa27.08■■□□□ 1.93
VPS53-216ENST00000574029 ASTN2O75129 1339 aaPredicted RBP27.08■■□□□ 1.93
VPS53-216ENST00000574029 PODNQ7Z5L7 613 aa27.07■■□□□ 1.92
VPS53-216ENST00000574029 WWC1Q8IX03 1113 aa27.07■■□□□ 1.92
VPS53-216ENST00000574029 NEURL1BA8MQ27 555 aa27.06■■□□□ 1.92
VPS53-216ENST00000574029 CWF19L2Q2TBE0 894 aaKnown RBP27.06■■□□□ 1.92
VPS53-216ENST00000574029 GREM2Q9H772 168 aa27.06■■□□□ 1.92
VPS53-216ENST00000574029 BSDC1Q9NW68 430 aaPredicted RBP27.06■■□□□ 1.92
VPS53-216ENST00000574029 MINPP1Q9UNW1 487 aa27.06■■□□□ 1.92
VPS53-216ENST00000574029 CASP8AP2Q9UKL3 1982 aa27.06■■□□□ 1.92
VPS53-216ENST00000574029 TWISTNBQ3B726 338 aaPredicted RBP27.05■■□□□ 1.92
VPS53-216ENST00000574029 G2E3Q7L622 706 aa27.05■■□□□ 1.92
VPS53-216ENST00000574029 CCDC102AQ96A19 550 aa27.05■■□□□ 1.92
VPS53-216ENST00000574029 MED23Q9ULK4 1368 aa27.05■■□□□ 1.92
VPS53-216ENST00000574029 ZNF646O15015 1829 aaPredicted RBP27.04■■□□□ 1.92
VPS53-216ENST00000574029 USP17L3A6NCW0 530 aa27.04■■□□□ 1.92
VPS53-216ENST00000574029 USP17L4A6NCW7 530 aa27.04■■□□□ 1.92
VPS53-216ENST00000574029 WTIPA6NIX2 430 aaPredicted RBP27.04■■□□□ 1.92
VPS53-216ENST00000574029 H7C1W4 665 aa27.04■■□□□ 1.92
VPS53-216ENST00000574029 USP17L8P0C7I0 530 aa27.04■■□□□ 1.92
VPS53-216ENST00000574029 SCARF1Q14162 830 aa27.04■■□□□ 1.92
VPS53-216ENST00000574029 ANGEL2Q5VTE6 544 aaKnown RBP27.04■■□□□ 1.92
VPS53-216ENST00000574029 USP17L1Q7RTZ2 530 aa27.04■■□□□ 1.92
VPS53-216ENST00000574029 CDCA5Q96FF9 252 aa27.04■■□□□ 1.92
VPS53-216ENST00000574029 IL16Q14005 1332 aa27.03■■□□□ 1.92
VPS53-216ENST00000574029 NCBP3Q53F19 620 aaKnown RBP27.03■■□□□ 1.92
VPS53-216ENST00000574029 MYOZ2Q9NPC6 264 aa27.03■■□□□ 1.92
VPS53-216ENST00000574029 SLC4A2P04920 1241 aa27.02■■□□□ 1.92
VPS53-216ENST00000574029 ZNF157P51786 506 aaPredicted RBP27.02■■□□□ 1.92
VPS53-216ENST00000574029 PITPNM2Q9BZ72 1349 aa27.01■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms