RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ECE1P42892 770 aa22.05■■□□□ 1.12
CLN3-216ENST00000565316 KCNQ5Q9NR82 932 aa22.05■■□□□ 1.12
CLN3-216ENST00000565316 RTL9Q8NET4 1388 aa22.04■■□□□ 1.12
CLN3-216ENST00000565316 THSD7BQ9C0I4 1608 aa22.04■■□□□ 1.12
CLN3-216ENST00000565316 IL16Q14005 1332 aa22.04■■□□□ 1.12
CLN3-216ENST00000565316 PI4KAP2A4QPH2 592 aa22.04■■□□□ 1.12
CLN3-216ENST00000565316 CELF2O95319 508 aaKnown RBP22.04■■□□□ 1.12
CLN3-216ENST00000565316 DOK7Q18PE1 504 aa22.04■■□□□ 1.12
CLN3-216ENST00000565316 PI4KAP1Q8N8J0 262 aa22.04■■□□□ 1.12
CLN3-216ENST00000565316 JARID2Q92833 1246 aaPredicted RBP22.04■■□□□ 1.12
CLN3-216ENST00000565316 GPR101Q96P66 508 aaPredicted RBP22.04■■□□□ 1.12
CLN3-216ENST00000565316 CAPN15O75808 1086 aa22.03■■□□□ 1.12
CLN3-216ENST00000565316 CDC37L1Q7L3B6 337 aa22.03■■□□□ 1.12
CLN3-216ENST00000565316 SAPCD2Q86UD0 394 aa22.03■■□□□ 1.12
CLN3-216ENST00000565316 ZC3H12CQ9C0D7 883 aaKnown RBP22.03■■□□□ 1.12
CLN3-216ENST00000565316 CYP4F22Q6NT55 531 aa22.02■■□□□ 1.12
CLN3-216ENST00000565316 HHIPL1Q96JK4 782 aa22.02■■□□□ 1.12
CLN3-216ENST00000565316 STK31Q9BXU1 1019 aa22.02■■□□□ 1.12
CLN3-216ENST00000565316 ANKIB1Q9P2G1 1089 aa22.02■■□□□ 1.12
CLN3-216ENST00000565316 GGA1Q9UJY5 639 aa22.02■■□□□ 1.12
CLN3-216ENST00000565316 UFL1O94874 794 aa22.01■■□□□ 1.11
CLN3-216ENST00000565316 VIL1P09327 827 aaKnown RBP22.01■■□□□ 1.11
CLN3-216ENST00000565316 HSPA8P11142 646 aaKnown RBP22.01■■□□□ 1.11
CLN3-216ENST00000565316 LBX1P52954 281 aa22.01■■□□□ 1.11
CLN3-216ENST00000565316 TWISTNBQ3B726 338 aaPredicted RBP22.01■■□□□ 1.11
CLN3-216ENST00000565316 SAMD7Q7Z3H4 446 aa22.01■■□□□ 1.11
CLN3-216ENST00000565316 ANKRD18AQ8IVF6 992 aa22■■□□□ 1.11
CLN3-216ENST00000565316 CCDC85AQ96PX6 553 aaPredicted RBP22■■□□□ 1.11
CLN3-216ENST00000565316 EGFRP00533 1210 aa21.99■■□□□ 1.11
CLN3-216ENST00000565316 MAP2K2P36507 400 aa21.99■■□□□ 1.11
CLN3-216ENST00000565316 CTSWP56202 376 aa21.99■■□□□ 1.11
CLN3-216ENST00000565316 NEXNQ0ZGT2 675 aa21.99■■□□□ 1.11
CLN3-216ENST00000565316 PAXIP1Q6ZW49 1069 aaPredicted RBP21.99■■□□□ 1.11
CLN3-216ENST00000565316 G2E3Q7L622 706 aa21.99■■□□□ 1.11
CLN3-216ENST00000565316 USP48Q86UV5 1035 aa21.99■■□□□ 1.11
CLN3-216ENST00000565316 TTLL11Q8NHH1 800 aa21.99■■□□□ 1.11
CLN3-216ENST00000565316 XDHP47989 1333 aa21.98■■□□□ 1.11
CLN3-216ENST00000565316 ZNF609O15014 1411 aa21.98■■□□□ 1.11
CLN3-216ENST00000565316 NEURL1BA8MQ27 555 aa21.98■■□□□ 1.11
CLN3-216ENST00000565316 SLC4A2P04920 1241 aa21.98■■□□□ 1.11
CLN3-216ENST00000565316 TBC1D10BQ4KMP7 808 aaPredicted RBP21.98■■□□□ 1.11
CLN3-216ENST00000565316 CDC5LQ99459 802 aaKnown RBP21.97■■□□□ 1.11
CLN3-216ENST00000565316 SCN9AQ15858 1988 aa21.97■■□□□ 1.11
CLN3-216ENST00000565316 H7C1W4 665 aa21.96■■□□□ 1.11
CLN3-216ENST00000565316 CWF19L2Q2TBE0 894 aaKnown RBP21.96■■□□□ 1.11
CLN3-216ENST00000565316 BSDC1Q9NW68 430 aaPredicted RBP21.96■■□□□ 1.11
CLN3-216ENST00000565316 AOC2O75106 756 aa21.95■■□□□ 1.1
CLN3-216ENST00000565316 ATP2B4P23634 1241 aa21.95■■□□□ 1.1
CLN3-216ENST00000565316 ZEB1P37275 1124 aaPredicted RBP21.95■■□□□ 1.1
CLN3-216ENST00000565316 GRM1Q13255 1194 aa21.95■■□□□ 1.1
CLN3-216ENST00000565316 KRT26Q7Z3Y9 468 aa21.95■■□□□ 1.1
CLN3-216ENST00000565316 GREM2Q9H772 168 aa21.95■■□□□ 1.1
CLN3-216ENST00000565316 ZNF408Q9H9D4 720 aa21.95■■□□□ 1.1
CLN3-216ENST00000565316 MRS2Q9HD23 443 aa21.95■■□□□ 1.1
CLN3-216ENST00000565316 G3V3G9 751 aa21.94■■□□□ 1.1
CLN3-216ENST00000565316 ZNF280AP59817 542 aaPredicted RBP21.94■■□□□ 1.1
CLN3-216ENST00000565316 DCAF8Q5TAQ9 597 aa21.94■■□□□ 1.1
CLN3-216ENST00000565316 RSBN1LQ6PCB5 846 aaPredicted RBP21.94■■□□□ 1.1
CLN3-216ENST00000565316 DLK2Q6UY11 383 aa21.94■■□□□ 1.1
CLN3-216ENST00000565316 WDR63Q8IWG1 891 aa21.94■■□□□ 1.1
CLN3-216ENST00000565316 AGBL3Q8NEM8 1001 aa21.94■■□□□ 1.1
CLN3-216ENST00000565316 MINPP1Q9UNW1 487 aa21.94■■□□□ 1.1
CLN3-216ENST00000565316 FANCIQ9NVI1 1328 aa21.94■■□□□ 1.1
CLN3-216ENST00000565316 FLIIQ13045 1269 aa21.93■■□□□ 1.1
CLN3-216ENST00000565316 KIF4BQ2VIQ3 1234 aa21.93■■□□□ 1.1
CLN3-216ENST00000565316 RBM26Q5T8P6 1007 aaKnown RBP21.93■■□□□ 1.1
CLN3-216ENST00000565316 GMLQ99445 158 aa21.93■■□□□ 1.1
CLN3-216ENST00000565316 BEGAINQ9BUH8 593 aa21.93■■□□□ 1.1
CLN3-216ENST00000565316 PLA2G12BQ9BX93 195 aa21.93■■□□□ 1.1
CLN3-216ENST00000565316 WTIPA6NIX2 430 aaPredicted RBP21.92■■□□□ 1.1
CLN3-216ENST00000565316 GCKRQ14397 625 aa21.92■■□□□ 1.1
CLN3-216ENST00000565316 UBE3BQ7Z3V4 1068 aa21.92■■□□□ 1.1
CLN3-216ENST00000565316 PODNQ7Z5L7 613 aa21.92■■□□□ 1.1
CLN3-216ENST00000565316 DCPSQ96C86 337 aaKnown RBP21.92■■□□□ 1.1
CLN3-216ENST00000565316 ANP32CO43423 234 aa21.91■■□□□ 1.1
CLN3-216ENST00000565316 VAMP4O75379 141 aa21.91■■□□□ 1.1
CLN3-216ENST00000565316 CASP7P55210 303 aa21.91■■□□□ 1.1
CLN3-216ENST00000565316 MED23Q9ULK4 1368 aa21.91■■□□□ 1.1
CLN3-216ENST00000565316 ADM5C9JUS6 153 aa21.9■■□□□ 1.1
CLN3-216ENST00000565316 BRPF1P55201 1214 aaPredicted RBP21.9■■□□□ 1.1
CLN3-216ENST00000565316 HUNKP57058 714 aa21.9■■□□□ 1.1
CLN3-216ENST00000565316 DNAAF4Q8WXU2 420 aa21.9■■□□□ 1.1
CLN3-216ENST00000565316 USP17L3A6NCW0 530 aa21.89■■□□□ 1.1
CLN3-216ENST00000565316 USP17L4A6NCW7 530 aa21.89■■□□□ 1.1
CLN3-216ENST00000565316 ZNF316A6NFI3 1004 aaPredicted RBP21.89■■□□□ 1.1
CLN3-216ENST00000565316 CA12O43570 354 aa21.89■■□□□ 1.1
CLN3-216ENST00000565316 CSF1RP07333 972 aa21.89■■□□□ 1.1
CLN3-216ENST00000565316 USP17L1Q7RTZ2 530 aa21.89■■□□□ 1.1
CLN3-216ENST00000565316 LINS1Q8NG48 757 aa21.89■■□□□ 1.1
CLN3-216ENST00000565316 GBA2Q9HCG7 927 aaPredicted RBP21.89■■□□□ 1.1
CLN3-216ENST00000565316 PSME4Q14997 1843 aa21.89■■□□□ 1.09
CLN3-216ENST00000565316 MYH3P11055 1940 aa21.89■■□□□ 1.09
CLN3-216ENST00000565316 CCT4P50991 539 aaKnown RBP21.88■■□□□ 1.09
CLN3-216ENST00000565316 FKBP5Q13451 457 aaPredicted RBP21.88■■□□□ 1.09
CLN3-216ENST00000565316 MYH16Q9H6N6 1097 aa21.88■■□□□ 1.09
CLN3-216ENST00000565316 GGA3Q9NZ52 723 aa21.88■■□□□ 1.09
CLN3-216ENST00000565316 ASTN2O75129 1339 aaPredicted RBP21.88■■□□□ 1.09
CLN3-216ENST00000565316 POLR2AP24928 1970 aaKnown RBP21.87■■□□□ 1.09
CLN3-216ENST00000565316 USP17L8P0C7I0 530 aa21.87■■□□□ 1.09
CLN3-216ENST00000565316 NOGQ13253 232 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms