RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 DPF2Q92785 391 aa16.78■□□□□ 0.28
SF3B3-202ENST00000562722 ZC3H12CQ9C0D7 883 aaKnown RBP16.78■□□□□ 0.28
SF3B3-202ENST00000562722 ZNF853P0CG23 659 aa16.77■□□□□ 0.28
SF3B3-202ENST00000562722 ABHD8Q96I13 439 aa16.77■□□□□ 0.28
SF3B3-202ENST00000562722 CCDC85AQ96PX6 553 aaPredicted RBP16.77■□□□□ 0.28
SF3B3-202ENST00000562722 SEC31BQ9NQW1 1179 aa16.77■□□□□ 0.28
SF3B3-202ENST00000562722 UFL1O94874 794 aa16.76■□□□□ 0.27
SF3B3-202ENST00000562722 DDX58O95786 925 aaKnown RBP16.76■□□□□ 0.27
SF3B3-202ENST00000562722 RPS12P25398 132 aaKnown RBP16.76■□□□□ 0.27
SF3B3-202ENST00000562722 CCDC152Q4G0S7 254 aa16.76■□□□□ 0.27
SF3B3-202ENST00000562722 KRT26Q7Z3Y9 468 aa16.76■□□□□ 0.27
SF3B3-202ENST00000562722 JARID2Q92833 1246 aaPredicted RBP16.76■□□□□ 0.27
SF3B3-202ENST00000562722 HHIPL1Q96JK4 782 aa16.76■□□□□ 0.27
SF3B3-202ENST00000562722 KCNQ5Q9NR82 932 aa16.76■□□□□ 0.27
SF3B3-202ENST00000562722 CWC25Q9NXE8 425 aaPredicted RBP16.76■□□□□ 0.27
SF3B3-202ENST00000562722 COL4A1P02462 1669 aa16.75■□□□□ 0.27
SF3B3-202ENST00000562722 HUNKP57058 714 aa16.75■□□□□ 0.27
SF3B3-202ENST00000562722 CCDC30Q5VVM6 783 aa16.75■□□□□ 0.27
SF3B3-202ENST00000562722 CCDC191Q8NCU4 936 aa16.75■□□□□ 0.27
SF3B3-202ENST00000562722 DCPSQ96C86 337 aaKnown RBP16.75■□□□□ 0.27
SF3B3-202ENST00000562722 CHMP4AQ9BY43 222 aa16.75■□□□□ 0.27
SF3B3-202ENST00000562722 GGA1Q9UJY5 639 aa16.75■□□□□ 0.27
SF3B3-202ENST00000562722 RTL9Q8NET4 1388 aa16.75■□□□□ 0.27
SF3B3-202ENST00000562722 CA12O43570 354 aa16.74■□□□□ 0.27
SF3B3-202ENST00000562722 PDE8AO60658 829 aa16.74■□□□□ 0.27
SF3B3-202ENST00000562722 PCCAP05165 728 aaPredicted RBP16.74■□□□□ 0.27
SF3B3-202ENST00000562722 KIF4BQ2VIQ3 1234 aa16.74■□□□□ 0.27
SF3B3-202ENST00000562722 DLK2Q6UY11 383 aa16.74■□□□□ 0.27
SF3B3-202ENST00000562722 C8orf58Q8NAV2 365 aa16.74■□□□□ 0.27
SF3B3-202ENST00000562722 ADM5C9JUS6 153 aa16.73■□□□□ 0.27
SF3B3-202ENST00000562722 EGFRP00533 1210 aa16.73■□□□□ 0.27
SF3B3-202ENST00000562722 BRPF1P55201 1214 aaPredicted RBP16.73■□□□□ 0.27
SF3B3-202ENST00000562722 METTL22Q9BUU2 404 aaPredicted RBP16.73■□□□□ 0.27
SF3B3-202ENST00000562722 PODXL2Q9NZ53 605 aa16.73■□□□□ 0.27
SF3B3-202ENST00000562722 CCDC85CA6NKD9 419 aa16.72■□□□□ 0.27
SF3B3-202ENST00000562722 NOGQ13253 232 aa16.72■□□□□ 0.27
SF3B3-202ENST00000562722 ANKRD18AQ8IVF6 992 aa16.72■□□□□ 0.27
SF3B3-202ENST00000562722 C2orf69Q8N8R5 385 aa16.72■□□□□ 0.27
SF3B3-202ENST00000562722 GBA2Q9HCG7 927 aaPredicted RBP16.72■□□□□ 0.27
SF3B3-202ENST00000562722 MAP3K2Q9Y2U5 619 aa16.72■□□□□ 0.27
SF3B3-202ENST00000562722 SULF1Q8IWU6 871 aa16.71■□□□□ 0.27
SF3B3-202ENST00000562722 STK31Q9BXU1 1019 aa16.71■□□□□ 0.27
SF3B3-202ENST00000562722 GGA3Q9NZ52 723 aa16.71■□□□□ 0.27
SF3B3-202ENST00000562722 XDHP47989 1333 aa16.7■□□□□ 0.26
SF3B3-202ENST00000562722 VIL1P09327 827 aaKnown RBP16.7■□□□□ 0.26
SF3B3-202ENST00000562722 NEXNQ0ZGT2 675 aa16.7■□□□□ 0.26
SF3B3-202ENST00000562722 RGMBQ6NW40 437 aa16.7■□□□□ 0.26
SF3B3-202ENST00000562722 TSR2Q969E8 191 aaKnown RBP16.7■□□□□ 0.26
SF3B3-202ENST00000562722 CTSWP56202 376 aa16.69■□□□□ 0.26
SF3B3-202ENST00000562722 RSBN1LQ6PCB5 846 aaPredicted RBP16.69■□□□□ 0.26
SF3B3-202ENST00000562722 KSR2Q6VAB6 950 aa16.69■□□□□ 0.26
SF3B3-202ENST00000562722 TSPYL6Q8N831 410 aa16.69■□□□□ 0.26
SF3B3-202ENST00000562722 CDC5LQ99459 802 aaKnown RBP16.69■□□□□ 0.26
SF3B3-202ENST00000562722 PI4KAP2A4QPH2 592 aa16.68■□□□□ 0.26
SF3B3-202ENST00000562722 ATP2B4P23634 1241 aa16.68■□□□□ 0.26
SF3B3-202ENST00000562722 ZNF157P51786 506 aaPredicted RBP16.68■□□□□ 0.26
SF3B3-202ENST00000562722 PI4KAP1Q8N8J0 262 aa16.68■□□□□ 0.26
SF3B3-202ENST00000562722 AGBL3Q8NEM8 1001 aa16.68■□□□□ 0.26
SF3B3-202ENST00000562722 ZIC5Q96T25 663 aa16.68■□□□□ 0.26
SF3B3-202ENST00000562722 ASTN2O75129 1339 aaPredicted RBP16.68■□□□□ 0.26
SF3B3-202ENST00000562722 SCARF1Q14162 830 aa16.67■□□□□ 0.26
SF3B3-202ENST00000562722 ANGEL2Q5VTE6 544 aaKnown RBP16.67■□□□□ 0.26
SF3B3-202ENST00000562722 FBXW7Q969H0 707 aa16.67■□□□□ 0.26
SF3B3-202ENST00000562722 CCDC102AQ96A19 550 aa16.67■□□□□ 0.26
SF3B3-202ENST00000562722 USP17L3A6NCW0 530 aa16.66■□□□□ 0.26
SF3B3-202ENST00000562722 USP17L4A6NCW7 530 aa16.66■□□□□ 0.26
SF3B3-202ENST00000562722 IGKV5-2P06315 115 aa16.66■□□□□ 0.26
SF3B3-202ENST00000562722 USP17L8P0C7I0 530 aa16.66■□□□□ 0.26
SF3B3-202ENST00000562722 FAM161AQ3B820 660 aa16.66■□□□□ 0.26
SF3B3-202ENST00000562722 USP17L1Q7RTZ2 530 aa16.66■□□□□ 0.26
SF3B3-202ENST00000562722 CDCA5Q96FF9 252 aa16.66■□□□□ 0.26
SF3B3-202ENST00000562722 ZNF280AP59817 542 aaPredicted RBP16.65■□□□□ 0.26
SF3B3-202ENST00000562722 KIF23Q02241 960 aaPredicted RBP16.65■□□□□ 0.26
SF3B3-202ENST00000562722 DGKZQ13574 1117 aa16.65■□□□□ 0.26
SF3B3-202ENST00000562722 CWF19L2Q2TBE0 894 aaKnown RBP16.65■□□□□ 0.26
SF3B3-202ENST00000562722 MCOLN1Q9GZU1 580 aa16.65■□□□□ 0.26
SF3B3-202ENST00000562722 GREM2Q9H772 168 aa16.65■□□□□ 0.26
SF3B3-202ENST00000562722 MYOZ2Q9NPC6 264 aa16.65■□□□□ 0.26
SF3B3-202ENST00000562722 SCN9AQ15858 1988 aa16.65■□□□□ 0.26
SF3B3-202ENST00000562722 FAM155AB1AL88 458 aaPredicted RBP16.64■□□□□ 0.25
SF3B3-202ENST00000562722 TWISTNBQ3B726 338 aaPredicted RBP16.64■□□□□ 0.25
SF3B3-202ENST00000562722 UBE3BQ7Z3V4 1068 aa16.64■□□□□ 0.25
SF3B3-202ENST00000562722 PODNQ7Z5L7 613 aa16.64■□□□□ 0.25
SF3B3-202ENST00000562722 TTLL11Q8NHH1 800 aa16.64■□□□□ 0.25
SF3B3-202ENST00000562722 NEURL1BA8MQ27 555 aa16.63■□□□□ 0.25
SF3B3-202ENST00000562722 SLC4A2P04920 1241 aa16.63■□□□□ 0.25
SF3B3-202ENST00000562722 IGHMBP2P38935 993 aaKnown RBP16.63■□□□□ 0.25
SF3B3-202ENST00000562722 BSDC1Q9NW68 430 aaPredicted RBP16.63■□□□□ 0.25
SF3B3-202ENST00000562722 MINPP1Q9UNW1 487 aa16.63■□□□□ 0.25
SF3B3-202ENST00000562722 MED23Q9ULK4 1368 aa16.63■□□□□ 0.25
SF3B3-202ENST00000562722 ZNF609O15014 1411 aa16.62■□□□□ 0.25
SF3B3-202ENST00000562722 WTIPA6NIX2 430 aaPredicted RBP16.62■□□□□ 0.25
SF3B3-202ENST00000562722 CCT4P50991 539 aaKnown RBP16.62■□□□□ 0.25
SF3B3-202ENST00000562722 G2E3Q7L622 706 aa16.62■□□□□ 0.25
SF3B3-202ENST00000562722 WWC1Q8IX03 1113 aa16.62■□□□□ 0.25
SF3B3-202ENST00000562722 TRPA1O75762 1119 aa16.61■□□□□ 0.25
SF3B3-202ENST00000562722 SLC10A3P09131 477 aa16.61■□□□□ 0.25
SF3B3-202ENST00000562722 MLLT1Q03111 559 aaPredicted RBP16.61■□□□□ 0.25
SF3B3-202ENST00000562722 CCDC27Q2M243 656 aa16.61■□□□□ 0.25
SF3B3-202ENST00000562722 CCDC184Q52MB2 194 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms