RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 DBNDD1Q9H9R9 158 aa15.05■□□□□ -0
USP3-220ENST00000561381 SEC31BQ9NQW1 1179 aa15.05■□□□□ -0
USP3-220ENST00000561381 WBP1LQ9NX94 342 aa15.05■□□□□ -0
USP3-220ENST00000561381 WDR33Q9C0J8 1336 aaKnown RBP15.04■□□□□ -0
USP3-220ENST00000561381 SPDYE4A6NLX3 237 aa15.04■□□□□ -0
USP3-220ENST00000561381 C6orf229H3BNL8 230 aa15.04■□□□□ -0
USP3-220ENST00000561381 RPS8P62241 208 aaKnown RBP15.04■□□□□ -0
USP3-220ENST00000561381 TNIP1Q15025 636 aa15.04■□□□□ -0
USP3-220ENST00000561381 TSR2Q969E8 191 aaKnown RBP15.04■□□□□ -0
USP3-220ENST00000561381 KCNQ5Q9NR82 932 aa15.04■□□□□ -0
USP3-220ENST00000561381 PSMD14O00487 310 aa15.03■□□□□ -0
USP3-220ENST00000561381 AIDAQ96BJ3 306 aa15.03■□□□□ -0
USP3-220ENST00000561381 CCDC85AQ96PX6 553 aaPredicted RBP15.03■□□□□ -0
USP3-220ENST00000561381 GLIS2Q9BZE0 524 aaPredicted RBP15.03■□□□□ -0
USP3-220ENST00000561381 CNOT7Q9UIV1 285 aaKnown RBP15.03■□□□□ -0
USP3-220ENST00000561381 TRPM7Q96QT4 1865 aa15.03■□□□□ -0
USP3-220ENST00000561381 CDHR2Q9BYE9 1310 aa15.02■□□□□ -0
USP3-220ENST00000561381 PCCAP05165 728 aaPredicted RBP15.02■□□□□ -0
USP3-220ENST00000561381 CTCFP49711 727 aaPredicted RBP15.02■□□□□ -0
USP3-220ENST00000561381 GRM1Q13255 1194 aa15.02■□□□□ -0
USP3-220ENST00000561381 DOK7Q18PE1 504 aa15.02■□□□□ -0
USP3-220ENST00000561381 CCDC30Q5VVM6 783 aa15.02■□□□□ -0
USP3-220ENST00000561381 CYP4F22Q6NT55 531 aa15.02■□□□□ -0
USP3-220ENST00000561381 PAXIP1Q6ZW49 1069 aaPredicted RBP15.02■□□□□ -0
USP3-220ENST00000561381 MICALL2Q8IY33 904 aa15.02■□□□□ -0
USP3-220ENST00000561381 CCDC191Q8NCU4 936 aa15.02■□□□□ -0
USP3-220ENST00000561381 TBC1D16Q8TBP0 767 aa15.02■□□□□ -0
USP3-220ENST00000561381 METTL22Q9BUU2 404 aaPredicted RBP15.02■□□□□ -0
USP3-220ENST00000561381 PGAP2Q9UHJ9 254 aa15.02■□□□□ -0
USP3-220ENST00000561381 ECE2O60344 883 aa15.01□□□□□ -0.01
USP3-220ENST00000561381 GABBR2O75899 941 aa15.01□□□□□ -0.01
USP3-220ENST00000561381 CELF2O95319 508 aaKnown RBP15.01□□□□□ -0.01
USP3-220ENST00000561381 LBX1P52954 281 aa15.01□□□□□ -0.01
USP3-220ENST00000561381 CAPNS2Q96L46 248 aa15.01□□□□□ -0.01
USP3-220ENST00000561381 CWC25Q9NXE8 425 aaPredicted RBP15.01□□□□□ -0.01
USP3-220ENST00000561381 MAP3K2Q9Y2U5 619 aa15.01□□□□□ -0.01
USP3-220ENST00000561381 TLL2Q9Y6L7 1015 aa15.01□□□□□ -0.01
USP3-220ENST00000561381 RTL9Q8NET4 1388 aa15□□□□□ -0.01
USP3-220ENST00000561381 EGFRP00533 1210 aa15□□□□□ -0.01
USP3-220ENST00000561381 DLK2Q6UY11 383 aa15□□□□□ -0.01
USP3-220ENST00000561381 SAMD7Q7Z3H4 446 aa15□□□□□ -0.01
USP3-220ENST00000561381 PRDM10Q9NQV6 1147 aa15□□□□□ -0.01
USP3-220ENST00000561381 PI4KAP2A4QPH2 592 aa14.99□□□□□ -0.01
USP3-220ENST00000561381 H7C1D1 291 aa14.99□□□□□ -0.01
USP3-220ENST00000561381 PDE8AO60658 829 aa14.99□□□□□ -0.01
USP3-220ENST00000561381 DDX58O95786 925 aaKnown RBP14.99□□□□□ -0.01
USP3-220ENST00000561381 IGKV5-2P06315 115 aa14.99□□□□□ -0.01
USP3-220ENST00000561381 HSPA8P11142 646 aaKnown RBP14.99□□□□□ -0.01
USP3-220ENST00000561381 CCDC152Q4G0S7 254 aa14.99□□□□□ -0.01
USP3-220ENST00000561381 WWC1Q8IX03 1113 aa14.99□□□□□ -0.01
USP3-220ENST00000561381 PI4KAP1Q8N8J0 262 aa14.99□□□□□ -0.01
USP3-220ENST00000561381 ZC3H15Q8WU90 426 aaKnown RBP14.99□□□□□ -0.01
USP3-220ENST00000561381 EYA3Q99504 573 aa14.99□□□□□ -0.01
USP3-220ENST00000561381 ZNF408Q9H9D4 720 aa14.99□□□□□ -0.01
USP3-220ENST00000561381 PODXL2Q9NZ53 605 aa14.99□□□□□ -0.01
USP3-220ENST00000561381 SCN9AQ15858 1988 aa14.98□□□□□ -0.01
USP3-220ENST00000561381 UFL1O94874 794 aa14.98□□□□□ -0.01
USP3-220ENST00000561381 ECE1P42892 770 aa14.98□□□□□ -0.01
USP3-220ENST00000561381 MAP2K1Q02750 393 aaPredicted RBP14.98□□□□□ -0.01
USP3-220ENST00000561381 TBC1D10BQ4KMP7 808 aaPredicted RBP14.98□□□□□ -0.01
USP3-220ENST00000561381 KSR2Q6VAB6 950 aa14.98□□□□□ -0.01
USP3-220ENST00000561381 G2E3Q7L622 706 aa14.98□□□□□ -0.01
USP3-220ENST00000561381 SAPCD2Q86UD0 394 aa14.98□□□□□ -0.01
USP3-220ENST00000561381 DPF2Q92785 391 aa14.98□□□□□ -0.01
USP3-220ENST00000561381 ANKIB1Q9P2G1 1089 aa14.98□□□□□ -0.01
USP3-220ENST00000561381 THSD7BQ9C0I4 1608 aa14.97□□□□□ -0.01
USP3-220ENST00000561381 AOC2O75106 756 aa14.97□□□□□ -0.01
USP3-220ENST00000561381 HSP90B1P14625 803 aaKnown RBP14.97□□□□□ -0.01
USP3-220ENST00000561381 CCDC27Q2M243 656 aa14.97□□□□□ -0.01
USP3-220ENST00000561381 CWF19L2Q2TBE0 894 aaKnown RBP14.97□□□□□ -0.01
USP3-220ENST00000561381 RBM26Q5T8P6 1007 aaKnown RBP14.97□□□□□ -0.01
USP3-220ENST00000561381 CDC37L1Q7L3B6 337 aa14.97□□□□□ -0.01
USP3-220ENST00000561381 USP48Q86UV5 1035 aa14.97□□□□□ -0.01
USP3-220ENST00000561381 ZC3H12CQ9C0D7 883 aaKnown RBP14.97□□□□□ -0.01
USP3-220ENST00000561381 GGA1Q9UJY5 639 aa14.97□□□□□ -0.01
USP3-220ENST00000561381 WTIPA6NIX2 430 aaPredicted RBP14.96□□□□□ -0.01
USP3-220ENST00000561381 TWISTNBQ3B726 338 aaPredicted RBP14.96□□□□□ -0.01
USP3-220ENST00000561381 ANKRD18AQ8IVF6 992 aa14.96□□□□□ -0.01
USP3-220ENST00000561381 POLR2AP24928 1970 aaKnown RBP14.95□□□□□ -0.02
USP3-220ENST00000561381 VIL1P09327 827 aaKnown RBP14.95□□□□□ -0.02
USP3-220ENST00000561381 RPS12P25398 132 aaKnown RBP14.95□□□□□ -0.02
USP3-220ENST00000561381 CTSWP56202 376 aa14.95□□□□□ -0.02
USP3-220ENST00000561381 STK31Q9BXU1 1019 aa14.95□□□□□ -0.02
USP3-220ENST00000561381 CHMP4AQ9BY43 222 aa14.95□□□□□ -0.02
USP3-220ENST00000561381 ASTN2O75129 1339 aaPredicted RBP14.94□□□□□ -0.02
USP3-220ENST00000561381 NEURL1BA8MQ27 555 aa14.94□□□□□ -0.02
USP3-220ENST00000561381 ADM5C9JUS6 153 aa14.94□□□□□ -0.02
USP3-220ENST00000561381 G3V3G9 751 aa14.94□□□□□ -0.02
USP3-220ENST00000561381 DCAF8Q5TAQ9 597 aa14.94□□□□□ -0.02
USP3-220ENST00000561381 KRT26Q7Z3Y9 468 aa14.94□□□□□ -0.02
USP3-220ENST00000561381 TTLL11Q8NHH1 800 aa14.94□□□□□ -0.02
USP3-220ENST00000561381 GREM2Q9H772 168 aa14.94□□□□□ -0.02
USP3-220ENST00000561381 MRS2Q9HD23 443 aa14.94□□□□□ -0.02
USP3-220ENST00000561381 TSKSQ9UJT2 592 aa14.94□□□□□ -0.02
USP3-220ENST00000561381 SALL2Q9Y467 1007 aaPredicted RBP14.94□□□□□ -0.02
USP3-220ENST00000561381 XDHP47989 1333 aa14.93□□□□□ -0.02
USP3-220ENST00000561381 NEXNQ0ZGT2 675 aa14.93□□□□□ -0.02
USP3-220ENST00000561381 KIF4BQ2VIQ3 1234 aa14.93□□□□□ -0.02
USP3-220ENST00000561381 UBE3BQ7Z3V4 1068 aa14.93□□□□□ -0.02
USP3-220ENST00000561381 IL16Q14005 1332 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms