RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 COPRSQ9NQ92 184 aa12.52□□□□□ -0.41
USP3-216ENST00000559873 SPEF2Q9C093 1822 aa12.51□□□□□ -0.41
USP3-216ENST00000559873 EYA2O00167 538 aa12.51□□□□□ -0.41
USP3-216ENST00000559873 CIAO1O76071 339 aa12.51□□□□□ -0.41
USP3-216ENST00000559873 KCNJ4P48050 445 aa12.51□□□□□ -0.41
USP3-216ENST00000559873 PTPN12Q05209 780 aaKnown RBP12.51□□□□□ -0.41
USP3-216ENST00000559873 ZNF594Q96JF6 807 aaPredicted RBP12.51□□□□□ -0.41
USP3-216ENST00000559873 EYA3Q99504 573 aa12.51□□□□□ -0.41
USP3-216ENST00000559873 PODXL2Q9NZ53 605 aa12.51□□□□□ -0.41
USP3-216ENST00000559873 NSFL1CQ9UNZ2 370 aaKnown RBP12.51□□□□□ -0.41
USP3-216ENST00000559873 GOLGB1Q14789 3259 aaKnown RBP12.5□□□□□ -0.41
USP3-216ENST00000559873 ATP2B4P23634 1241 aa12.5□□□□□ -0.41
USP3-216ENST00000559873 IL15P40933 162 aaPredicted RBP12.5□□□□□ -0.41
USP3-216ENST00000559873 RFX5P48382 616 aaPredicted RBP12.5□□□□□ -0.41
USP3-216ENST00000559873 CHRNDQ07001 517 aa12.5□□□□□ -0.41
USP3-216ENST00000559873 OS9Q13438 667 aaPredicted RBP12.5□□□□□ -0.41
USP3-216ENST00000559873 SSH3Q8TE77 659 aa12.5□□□□□ -0.41
USP3-216ENST00000559873 VPS33BQ9H267 617 aa12.5□□□□□ -0.41
USP3-216ENST00000559873 GGA1Q9UJY5 639 aa12.5□□□□□ -0.41
USP3-216ENST00000559873 MINPP1Q9UNW1 487 aa12.5□□□□□ -0.41
USP3-216ENST00000559873 SNED1Q8TER0 1413 aa12.5□□□□□ -0.41
USP3-216ENST00000559873 COL4A1P02462 1669 aa12.5□□□□□ -0.41
USP3-216ENST00000559873 TAF1P21675 1872 aa12.5□□□□□ -0.41
USP3-216ENST00000559873 FER1L6Q2WGJ9 1857 aa12.5□□□□□ -0.41
USP3-216ENST00000559873 PNMA6EA0A0J9YXQ4 647 aa12.49□□□□□ -0.41
USP3-216ENST00000559873 NFKBIEO00221 500 aa12.49□□□□□ -0.41
USP3-216ENST00000559873 UFL1O94874 794 aa12.49□□□□□ -0.41
USP3-216ENST00000559873 GPSM2P81274 684 aa12.49□□□□□ -0.41
USP3-216ENST00000559873 G3BP1Q13283 466 aaKnown RBP eCLIP12.49□□□□□ -0.41
USP3-216ENST00000559873 POLA2Q14181 598 aa12.49□□□□□ -0.41
USP3-216ENST00000559873 HSP90AB4PQ58FF6 505 aa12.49□□□□□ -0.41
USP3-216ENST00000559873 METTL24Q5JXM2 366 aa12.49□□□□□ -0.41
USP3-216ENST00000559873 RTFDC1Q9BY42 306 aaPredicted RBP12.49□□□□□ -0.41
USP3-216ENST00000559873 SIL1Q9H173 461 aa12.49□□□□□ -0.41
USP3-216ENST00000559873 LEMD3Q9Y2U8 911 aa12.49□□□□□ -0.41
USP3-216ENST00000559873 C6orf229H3BNL8 230 aa12.48□□□□□ -0.41
USP3-216ENST00000559873 LMNB1P20700 586 aa12.48□□□□□ -0.41
USP3-216ENST00000559873 RASSF7Q02833 373 aa12.48□□□□□ -0.41
USP3-216ENST00000559873 OLFM4Q6UX06 510 aa12.48□□□□□ -0.41
USP3-216ENST00000559873 ERC1Q8IUD2 1116 aa12.48□□□□□ -0.41
USP3-216ENST00000559873 KLHDC4Q8TBB5 520 aa12.48□□□□□ -0.41
USP3-216ENST00000559873 TBC1D16Q8TBP0 767 aa12.48□□□□□ -0.41
USP3-216ENST00000559873 LTBP1Q14766 1721 aa12.48□□□□□ -0.41
USP3-216ENST00000559873 DUOX1Q9NRD9 1551 aa12.47□□□□□ -0.41
USP3-216ENST00000559873 MED23Q9ULK4 1368 aa12.47□□□□□ -0.41
USP3-216ENST00000559873 ZNF804BA4D1E1 1349 aa12.47□□□□□ -0.41
USP3-216ENST00000559873 ZC3H4Q9UPT8 1303 aaKnown RBP12.47□□□□□ -0.41
USP3-216ENST00000559873 PPIP5K2O43314 1243 aa12.47□□□□□ -0.41
USP3-216ENST00000559873 SURF6O75683 361 aaKnown RBP12.47□□□□□ -0.41
USP3-216ENST00000559873 IARSP41252 1262 aaKnown RBP12.47□□□□□ -0.41
USP3-216ENST00000559873 PUM3Q15397 648 aaKnown RBP12.47□□□□□ -0.41
USP3-216ENST00000559873 LRRC24Q50LG9 513 aa12.47□□□□□ -0.41
USP3-216ENST00000559873 JDP2Q8WYK2 163 aa12.47□□□□□ -0.41
USP3-216ENST00000559873 PUS3Q9BZE2 481 aaKnown RBP12.47□□□□□ -0.41
USP3-216ENST00000559873 CEP126Q9P2H0 1117 aa12.47□□□□□ -0.41
USP3-216ENST00000559873 PA2G4Q9UQ80 394 aaKnown RBP12.47□□□□□ -0.41
USP3-216ENST00000559873 RIPOR2Q9Y4F9 1068 aa12.47□□□□□ -0.41
USP3-216ENST00000559873 UTRNP46939 3433 aa12.47□□□□□ -0.41
USP3-216ENST00000559873 PDE8BO95263 885 aa12.46□□□□□ -0.41
USP3-216ENST00000559873 KIAA2012Q0VF49 1180 aa12.46□□□□□ -0.41
USP3-216ENST00000559873 WASHC4Q2M389 1173 aa12.46□□□□□ -0.41
USP3-216ENST00000559873 LARGE2Q8N3Y3 721 aa12.46□□□□□ -0.41
USP3-216ENST00000559873 EXOC6Q8TAG9 804 aa12.46□□□□□ -0.41
USP3-216ENST00000559873 ZC3H12CQ9C0D7 883 aaKnown RBP12.46□□□□□ -0.41
USP3-216ENST00000559873 ZNF277Q9NRM2 450 aaPredicted RBP12.46□□□□□ -0.41
USP3-216ENST00000559873 RNF181Q9P0P0 153 aa12.46□□□□□ -0.41
USP3-216ENST00000559873 AKAP2Q9Y2D5 859 aa12.46□□□□□ -0.41
USP3-216ENST00000559873 NOP58Q9Y2X3 529 aaKnown RBP12.46□□□□□ -0.41
USP3-216ENST00000559873 A0A1B0GUL6 1792 aa12.46□□□□□ -0.42
USP3-216ENST00000559873 G3V3G9 751 aa12.45□□□□□ -0.42
USP3-216ENST00000559873 IFIT1P09914 478 aaKnown RBP12.45□□□□□ -0.42
USP3-216ENST00000559873 IRX6P78412 446 aaPredicted RBP12.45□□□□□ -0.42
USP3-216ENST00000559873 UBE4AQ14139 1066 aa12.45□□□□□ -0.42
USP3-216ENST00000559873 DCAF8Q5TAQ9 597 aa12.45□□□□□ -0.42
USP3-216ENST00000559873 NIM1KQ8IY84 436 aa12.45□□□□□ -0.42
USP3-216ENST00000559873 POLLQ9UGP5 575 aa12.45□□□□□ -0.42
USP3-216ENST00000559873 RAB11FIP3O75154 756 aa12.44□□□□□ -0.42
USP3-216ENST00000559873 TAF5LO75529 589 aa12.44□□□□□ -0.42
USP3-216ENST00000559873 SLC5A1P13866 664 aa12.44□□□□□ -0.42
USP3-216ENST00000559873 ATP2B3Q16720 1220 aa12.44□□□□□ -0.42
USP3-216ENST00000559873 AOC3Q16853 763 aa12.44□□□□□ -0.42
USP3-216ENST00000559873 C9orf131Q5VYM1 1079 aa12.44□□□□□ -0.42
USP3-216ENST00000559873 ATG9AQ7Z3C6 839 aa12.44□□□□□ -0.42
USP3-216ENST00000559873 ZNF804AQ7Z570 1209 aa12.44□□□□□ -0.42
USP3-216ENST00000559873 SLC51AQ86UW1 340 aa12.44□□□□□ -0.42
USP3-216ENST00000559873 HELBQ8NG08 1087 aaPredicted RBP12.44□□□□□ -0.42
USP3-216ENST00000559873 LPIN2Q92539 896 aa12.44□□□□□ -0.42
USP3-216ENST00000559873 TIAM2Q8IVF5 1701 aa12.43□□□□□ -0.42
USP3-216ENST00000559873 CAVIN4Q5BKX8 364 aa12.43□□□□□ -0.42
USP3-216ENST00000559873 VGLL2Q8N8G2 317 aa12.43□□□□□ -0.42
USP3-216ENST00000559873 KIF1BPQ96EK5 621 aa12.43□□□□□ -0.42
USP3-216ENST00000559873 RWDD1Q9H446 243 aaPredicted RBP12.43□□□□□ -0.42
USP3-216ENST00000559873 ZBTB47Q9UFB7 747 aaPredicted RBP12.43□□□□□ -0.42
USP3-216ENST00000559873 EXOC6BQ9Y2D4 811 aa12.43□□□□□ -0.42
USP3-216ENST00000559873 PCDHB15Q9Y5E8 787 aa12.43□□□□□ -0.42
USP3-216ENST00000559873 CHD4Q14839 1912 aa12.43□□□□□ -0.42
USP3-216ENST00000559873 RIMBP2O15034 1052 aa12.42□□□□□ -0.42
USP3-216ENST00000559873 EIF6P56537 245 aaKnown RBP12.42□□□□□ -0.42
USP3-216ENST00000559873 TFCP2Q12800 502 aa12.42□□□□□ -0.42
USP3-216ENST00000559873 HDAC1Q13547 482 aaPredicted RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms