RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 RGL3Q3MIN7 710 aa10.89□□□□□ -0.67
SPG11-213ENST00000558988 MEX3CQ5U5Q3 659 aaKnown RBP10.89□□□□□ -0.67
SPG11-213ENST00000558988 AK7Q96M32 723 aa10.89□□□□□ -0.67
SPG11-213ENST00000558988 PCDHB11Q9Y5F2 797 aa10.89□□□□□ -0.67
SPG11-213ENST00000558988 XRN1Q8IZH2 1706 aaKnown RBP10.89□□□□□ -0.67
SPG11-213ENST00000558988 GRIK4Q16099 956 aa10.88□□□□□ -0.67
SPG11-213ENST00000558988 NACC1Q96RE7 527 aa10.88□□□□□ -0.67
SPG11-213ENST00000558988 KRTAP4-9Q9BYQ8 210 aa10.88□□□□□ -0.67
SPG11-213ENST00000558988 RGS17Q9UGC6 210 aaPredicted RBP10.88□□□□□ -0.67
SPG11-213ENST00000558988 NCOA3Q9Y6Q9 1424 aa10.88□□□□□ -0.67
SPG11-213ENST00000558988 JCADQ9P266 1359 aa10.88□□□□□ -0.67
SPG11-213ENST00000558988 FAM182BQ5T319 152 aa10.87□□□□□ -0.67
SPG11-213ENST00000558988 XAGE2Q96GT9 111 aa10.87□□□□□ -0.67
SPG11-213ENST00000558988 CCDC144AA2RUR9 1427 aa10.86□□□□□ -0.67
SPG11-213ENST00000558988 ATXN7O15265 892 aaPredicted RBP10.86□□□□□ -0.67
SPG11-213ENST00000558988 MAPTP10636 758 aaKnown RBP10.86□□□□□ -0.67
SPG11-213ENST00000558988 PDE4DQ08499 809 aa10.86□□□□□ -0.67
SPG11-213ENST00000558988 POTEAQ6S8J7 498 aa10.86□□□□□ -0.67
SPG11-213ENST00000558988 BRINP3Q76B58 766 aa10.86□□□□□ -0.67
SPG11-213ENST00000558988 DDX17Q92841 729 aaKnown RBP10.86□□□□□ -0.67
SPG11-213ENST00000558988 MPHOSPH9Q99550 1183 aa10.86□□□□□ -0.67
SPG11-213ENST00000558988 COL16A1Q07092 1604 aaPredicted RBP10.86□□□□□ -0.67
SPG11-213ENST00000558988 DCDC2BA2VCK2 349 aa10.85□□□□□ -0.67
SPG11-213ENST00000558988 TNP2Q05952 138 aa10.85□□□□□ -0.67
SPG11-213ENST00000558988 FMNL2Q96PY5 1086 aa10.85□□□□□ -0.67
SPG11-213ENST00000558988 NALCNQ8IZF0 1738 aa10.84□□□□□ -0.67
SPG11-213ENST00000558988 TRIM28Q13263 835 aaKnown RBP10.84□□□□□ -0.67
SPG11-213ENST00000558988 COL9A3Q14050 684 aaPredicted RBP10.84□□□□□ -0.67
SPG11-213ENST00000558988 ZNF468Q5VIY5 522 aaPredicted RBP10.84□□□□□ -0.67
SPG11-213ENST00000558988 STK26Q9P289 416 aa10.84□□□□□ -0.67
SPG11-213ENST00000558988 PPLO60437 1756 aa10.84□□□□□ -0.67
SPG11-213ENST00000558988 ASXL1Q8IXJ9 1541 aa10.84□□□□□ -0.67
SPG11-213ENST00000558988 MST1RQ04912 1400 aa10.84□□□□□ -0.67
SPG11-213ENST00000558988 ADGRL3Q9HAR2 1447 aa10.84□□□□□ -0.67
SPG11-213ENST00000558988 ROBO2Q9HCK4 1378 aa10.83□□□□□ -0.68
SPG11-213ENST00000558988 ZBBXA8MT70 800 aa10.83□□□□□ -0.68
SPG11-213ENST00000558988 LRP6O75581 1613 aa10.83□□□□□ -0.68
SPG11-213ENST00000558988 AHDC1Q5TGY3 1603 aaPredicted RBP10.83□□□□□ -0.68
SPG11-213ENST00000558988 DCCP43146 1447 aa10.83□□□□□ -0.68
SPG11-213ENST00000558988 RPGRIP1LQ68CZ1 1315 aa10.83□□□□□ -0.68
SPG11-213ENST00000558988 ADGRF5Q8IZF2 1346 aa10.83□□□□□ -0.68
SPG11-213ENST00000558988 ELOA3CA0A087WX78 387 aaPredicted RBP10.82□□□□□ -0.68
SPG11-213ENST00000558988 ELOA3DA6NLF2 546 aaPredicted RBP10.82□□□□□ -0.68
SPG11-213ENST00000558988 ELNP15502 786 aa10.82□□□□□ -0.68
SPG11-213ENST00000558988 ELOA3BQ3SY89 546 aa10.82□□□□□ -0.68
SPG11-213ENST00000558988 NLRP8Q86W28 1048 aa10.82□□□□□ -0.68
SPG11-213ENST00000558988 PROCA1Q8NCQ7 364 aaPredicted RBP10.82□□□□□ -0.68
SPG11-213ENST00000558988 ELOA3Q8NG57 546 aa10.82□□□□□ -0.68
SPG11-213ENST00000558988 RHBDD1Q8TEB9 315 aa10.82□□□□□ -0.68
SPG11-213ENST00000558988 PRR12Q9ULL5 1215 aa10.82□□□□□ -0.68
SPG11-213ENST00000558988 SETD1AO15047 1707 aaKnown RBP10.81□□□□□ -0.68
SPG11-213ENST00000558988 USP17L8P0C7I0 530 aa10.81□□□□□ -0.68
SPG11-213ENST00000558988 SETD5Q9C0A6 1442 aa10.81□□□□□ -0.68
SPG11-213ENST00000558988 SPATA31A6Q5VVP1 1343 aa10.81□□□□□ -0.68
SPG11-213ENST00000558988 KHNYNO15037 678 aaKnown RBP10.8□□□□□ -0.68
SPG11-213ENST00000558988 FBXO45P0C2W1 286 aa10.8□□□□□ -0.68
SPG11-213ENST00000558988 ALAS2P22557 587 aa10.8□□□□□ -0.68
SPG11-213ENST00000558988 TMEM132EQ6IEE7 984 aa10.8□□□□□ -0.68
SPG11-213ENST00000558988 TBC1D9Q6ZT07 1266 aa10.8□□□□□ -0.68
SPG11-213ENST00000558988 RAB3GAP2Q9H2M9 1393 aa10.79□□□□□ -0.68
SPG11-213ENST00000558988 PTCH1Q13635 1447 aa10.79□□□□□ -0.68
SPG11-213ENST00000558988 FZD5Q13467 585 aa10.79□□□□□ -0.68
SPG11-213ENST00000558988 ORAI2Q96SN7 254 aa10.79□□□□□ -0.68
SPG11-213ENST00000558988 C1orf167Q5SNV9 1468 aa10.79□□□□□ -0.68
SPG11-213ENST00000558988 SHPRHQ149N8 1683 aa10.79□□□□□ -0.68
SPG11-213ENST00000558988 SPATA31E1Q6ZUB1 1445 aa10.78□□□□□ -0.68
SPG11-213ENST00000558988 M0R082 166 aa10.78□□□□□ -0.68
SPG11-213ENST00000558988 ATP4AP20648 1035 aa10.78□□□□□ -0.68
SPG11-213ENST00000558988 PLA2G4AP47712 749 aa10.78□□□□□ -0.68
SPG11-213ENST00000558988 ADGRE1Q14246 886 aa10.78□□□□□ -0.68
SPG11-213ENST00000558988 MBTPS1Q14703 1052 aa10.78□□□□□ -0.68
SPG11-213ENST00000558988 WAPLQ7Z5K2 1190 aa10.78□□□□□ -0.68
SPG11-213ENST00000558988 VSIG10Q8N0Z9 540 aa10.78□□□□□ -0.68
SPG11-213ENST00000558988 ZNF417Q8TAU3 575 aa10.78□□□□□ -0.68
SPG11-213ENST00000558988 C8orf37Q96NL8 207 aa10.78□□□□□ -0.68
SPG11-213ENST00000558988 ZNF587Q96SQ5 575 aaPredicted RBP10.78□□□□□ -0.68
SPG11-213ENST00000558988 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.78□□□□□ -0.68
SPG11-213ENST00000558988 KRTAP4-2Q9BYR5 136 aa10.78□□□□□ -0.68
SPG11-213ENST00000558988 ANKRD30BQ9BXX2 1392 aa10.77□□□□□ -0.68
SPG11-213ENST00000558988 NHSL1Q5SYE7 1610 aa10.77□□□□□ -0.68
SPG11-213ENST00000558988 C9orf172C9J069 976 aa10.77□□□□□ -0.69
SPG11-213ENST00000558988 XPCQ01831 940 aaPredicted RBP10.77□□□□□ -0.69
SPG11-213ENST00000558988 LRRC59Q96AG4 307 aaKnown RBP10.77□□□□□ -0.69
SPG11-213ENST00000558988 SKIV2LQ15477 1246 aaKnown RBP10.76□□□□□ -0.69
SPG11-213ENST00000558988 ESCO1Q5FWF5 840 aa10.76□□□□□ -0.69
SPG11-213ENST00000558988 ZNF772Q68DY9 489 aaPredicted RBP10.76□□□□□ -0.69
SPG11-213ENST00000558988 C8orf86Q6ZUL3 223 aa10.76□□□□□ -0.69
SPG11-213ENST00000558988 TP53INP1Q96A56 240 aa10.76□□□□□ -0.69
SPG11-213ENST00000558988 MDFIQ99750 246 aa10.76□□□□□ -0.69
SPG11-213ENST00000558988 TRIM34Q9BYJ4 488 aa10.76□□□□□ -0.69
SPG11-213ENST00000558988 AFF2P51816 1311 aa10.76□□□□□ -0.69
SPG11-213ENST00000558988 PNPLA6Q8IY17 1366 aa10.76□□□□□ -0.69
SPG11-213ENST00000558988 IFT172Q9UG01 1749 aa10.75□□□□□ -0.69
SPG11-213ENST00000558988 SAFB2Q14151 953 aaKnown RBP eCLIP10.75□□□□□ -0.69
SPG11-213ENST00000558988 TXNRD3Q86VQ6 643 aa10.75□□□□□ -0.69
SPG11-213ENST00000558988 RNF112Q9ULX5 631 aa10.75□□□□□ -0.69
SPG11-213ENST00000558988 PLEKHH1Q9ULM0 1364 aa10.75□□□□□ -0.69
SPG11-213ENST00000558988 A0A1W2PNR3 127 aa10.74□□□□□ -0.69
SPG11-213ENST00000558988 SELPP16109 830 aa10.74□□□□□ -0.69
SPG11-213ENST00000558988 CFAP70Q5T0N1 1121 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms