RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 TICAM2Q86XR7 235 aa20.33■□□□□ 0.85
LDLR-206ENST00000557958 TNS1Q9HBL0 1735 aaKnown RBP20.33■□□□□ 0.85
LDLR-206ENST00000557958 ZNF609O15014 1411 aa20.33■□□□□ 0.84
LDLR-206ENST00000557958 CD2BP2O95400 341 aaKnown RBP20.33■□□□□ 0.84
LDLR-206ENST00000557958 HSPA4P34932 840 aa20.33■□□□□ 0.84
LDLR-206ENST00000557958 NEUROD6Q96NK8 337 aa20.33■□□□□ 0.84
LDLR-206ENST00000557958 DBNDD2Q9BQY9 259 aa20.33■□□□□ 0.84
LDLR-206ENST00000557958 ANKRD18BA2A2Z9 1011 aa20.32■□□□□ 0.84
LDLR-206ENST00000557958 COL23A1Q86Y22 540 aaPredicted RBP20.32■□□□□ 0.84
LDLR-206ENST00000557958 TTLL11Q8NHH1 800 aa20.32■□□□□ 0.84
LDLR-206ENST00000557958 GYS1P13807 737 aa20.31■□□□□ 0.84
LDLR-206ENST00000557958 LRRC24Q50LG9 513 aa20.31■□□□□ 0.84
LDLR-206ENST00000557958 HAUS7Q99871 368 aa20.31■□□□□ 0.84
LDLR-206ENST00000557958 LSG1Q9H089 658 aaKnown RBP20.31■□□□□ 0.84
LDLR-206ENST00000557958 GREM2Q9H772 168 aa20.31■□□□□ 0.84
LDLR-206ENST00000557958 BCORQ6W2J9 1755 aa20.3■□□□□ 0.84
LDLR-206ENST00000557958 RGL2O15211 777 aa20.3■□□□□ 0.84
LDLR-206ENST00000557958 NFIXQ14938 502 aa20.3■□□□□ 0.84
LDLR-206ENST00000557958 TPTE2Q6XPS3 522 aa20.3■□□□□ 0.84
LDLR-206ENST00000557958 ITGA6P23229 1130 aa20.3■□□□□ 0.84
LDLR-206ENST00000557958 NEK4P51957 841 aa20.3■□□□□ 0.84
LDLR-206ENST00000557958 NYXQ9GZU5 481 aa20.3■□□□□ 0.84
LDLR-206ENST00000557958 IL25Q9H293 177 aa20.3■□□□□ 0.84
LDLR-206ENST00000557958 STK32BQ9NY57 414 aa20.29■□□□□ 0.84
LDLR-206ENST00000557958 A0A1B0GUL7 405 aa20.28■□□□□ 0.84
LDLR-206ENST00000557958 SNRKQ9NRH2 765 aa20.28■□□□□ 0.84
LDLR-206ENST00000557958 UBR3Q6ZT12 1888 aa20.28■□□□□ 0.84
LDLR-206ENST00000557958 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.28■□□□□ 0.84
LDLR-206ENST00000557958 DNAJC2Q99543 621 aaKnown RBP20.28■□□□□ 0.84
LDLR-206ENST00000557958 ANO8Q9HCE9 1232 aaPredicted RBP20.28■□□□□ 0.84
LDLR-206ENST00000557958 SCN7AQ01118 1682 aa20.27■□□□□ 0.84
LDLR-206ENST00000557958 MYH3P11055 1940 aa20.27■□□□□ 0.84
LDLR-206ENST00000557958 DDIT3P35638 169 aa20.27■□□□□ 0.84
LDLR-206ENST00000557958 NMIQ13287 307 aaPredicted RBP20.27■□□□□ 0.84
LDLR-206ENST00000557958 CCDC158Q5M9N0 1113 aa20.27■□□□□ 0.84
LDLR-206ENST00000557958 GORABQ5T7V8 394 aa20.27■□□□□ 0.84
LDLR-206ENST00000557958 LDHAL6AQ6ZMR3 332 aa20.27■□□□□ 0.84
LDLR-206ENST00000557958 PUS3Q9BZE2 481 aaKnown RBP20.27■□□□□ 0.84
LDLR-206ENST00000557958 PALD1Q9ULE6 856 aa20.27■□□□□ 0.84
LDLR-206ENST00000557958 C4AP0C0L4 1744 aa20.27■□□□□ 0.83
LDLR-206ENST00000557958 CCDC171Q6TFL3 1326 aa20.26■□□□□ 0.83
LDLR-206ENST00000557958 SLC15A2Q16348 729 aa20.26■□□□□ 0.83
LDLR-206ENST00000557958 FLAD1Q8NFF5 587 aa20.26■□□□□ 0.83
LDLR-206ENST00000557958 TIMM10P62072 90 aa20.26■□□□□ 0.83
LDLR-206ENST00000557958 LRRFIP1Q32MZ4 808 aaKnown RBP20.26■□□□□ 0.83
LDLR-206ENST00000557958 METTL24Q5JXM2 366 aa20.26■□□□□ 0.83
LDLR-206ENST00000557958 MSL1Q68DK7 614 aa20.26■□□□□ 0.83
LDLR-206ENST00000557958 CNNM1Q9NRU3 951 aa20.26■□□□□ 0.83
LDLR-206ENST00000557958 PNPLA7Q6ZV29 1317 aa20.25■□□□□ 0.83
LDLR-206ENST00000557958 ZKSCAN1P17029 563 aaPredicted RBP20.25■□□□□ 0.83
LDLR-206ENST00000557958 KCNJ4P48050 445 aa20.25■□□□□ 0.83
LDLR-206ENST00000557958 CCDC152Q4G0S7 254 aa20.25■□□□□ 0.83
LDLR-206ENST00000557958 CWC22Q9HCG8 908 aaKnown RBP20.25■□□□□ 0.83
LDLR-206ENST00000557958 SEC31BQ9NQW1 1179 aa20.25■□□□□ 0.83
LDLR-206ENST00000557958 CARMIL3Q8ND23 1372 aa20.25■□□□□ 0.83
LDLR-206ENST00000557958 ABCC12Q96J65 1359 aa20.25■□□□□ 0.83
LDLR-206ENST00000557958 FRAT2O75474 233 aaPredicted RBP20.24■□□□□ 0.83
LDLR-206ENST00000557958 RNF20Q5VTR2 975 aa20.24■□□□□ 0.83
LDLR-206ENST00000557958 C3orf67Q6ZVT6 689 aa20.24■□□□□ 0.83
LDLR-206ENST00000557958 CNBD1Q8NA66 436 aa20.24■□□□□ 0.83
LDLR-206ENST00000557958 KBTBD3Q8NAB2 608 aa20.24■□□□□ 0.83
LDLR-206ENST00000557958 FAM227BQ96M60 508 aa20.24■□□□□ 0.83
LDLR-206ENST00000557958 PAG1Q9NWQ8 432 aa20.24■□□□□ 0.83
LDLR-206ENST00000557958 SERPINB2P05120 415 aa20.24■□□□□ 0.83
LDLR-206ENST00000557958 IFIT1P09914 478 aaKnown RBP20.24■□□□□ 0.83
LDLR-206ENST00000557958 NLRP3Q96P20 1036 aa20.24■□□□□ 0.83
LDLR-206ENST00000557958 RIPOR2Q9Y4F9 1068 aa20.24■□□□□ 0.83
LDLR-206ENST00000557958 MED23Q9ULK4 1368 aa20.23■□□□□ 0.83
LDLR-206ENST00000557958 SPEF2Q9C093 1822 aa20.23■□□□□ 0.83
LDLR-206ENST00000557958 TTC39AQ5SRH9 613 aa20.23■□□□□ 0.83
LDLR-206ENST00000557958 SNX14Q9Y5W7 946 aa20.23■□□□□ 0.83
LDLR-206ENST00000557958 A0A0D9SFI3 127 aa20.22■□□□□ 0.83
LDLR-206ENST00000557958 TM4SF1P30408 202 aa20.22■□□□□ 0.83
LDLR-206ENST00000557958 ATP2B3Q16720 1220 aa20.22■□□□□ 0.83
LDLR-206ENST00000557958 MROH5Q6ZUA9 1318 aa20.22■□□□□ 0.83
LDLR-206ENST00000557958 RIC1Q4ADV7 1423 aa20.22■□□□□ 0.83
LDLR-206ENST00000557958 CCDC125Q86Z20 511 aa20.22■□□□□ 0.83
LDLR-206ENST00000557958 NLGN1Q8N2Q7 840 aa20.22■□□□□ 0.83
LDLR-206ENST00000557958 MAP4K1Q92918 833 aa20.22■□□□□ 0.83
LDLR-206ENST00000557958 XAGE2Q96GT9 111 aa20.22■□□□□ 0.83
LDLR-206ENST00000557958 PTH1RQ03431 593 aa20.21■□□□□ 0.83
LDLR-206ENST00000557958 SLC10A5Q5PT55 438 aa20.21■□□□□ 0.83
LDLR-206ENST00000557958 KCNB2Q92953 911 aa20.21■□□□□ 0.83
LDLR-206ENST00000557958 EDC3Q96F86 508 aaKnown RBP20.21■□□□□ 0.83
LDLR-206ENST00000557958 MPHOSPH8Q99549 860 aa20.21■□□□□ 0.83
LDLR-206ENST00000557958 RTL9Q8NET4 1388 aa20.21■□□□□ 0.83
LDLR-206ENST00000557958 GOLIM4O00461 696 aa20.2■□□□□ 0.82
LDLR-206ENST00000557958 DDR1Q08345 913 aa20.2■□□□□ 0.82
LDLR-206ENST00000557958 PRR5LQ6MZQ0 368 aa20.2■□□□□ 0.82
LDLR-206ENST00000557958 DDX46Q7L014 1031 aaKnown RBP20.2■□□□□ 0.82
LDLR-206ENST00000557958 FOXD4L1Q9NU39 408 aa20.2■□□□□ 0.82
LDLR-206ENST00000557958 HMG20BQ9P0W2 317 aa20.2■□□□□ 0.82
LDLR-206ENST00000557958 RBM8AQ9Y5S9 174 aaKnown RBP20.2■□□□□ 0.82
LDLR-206ENST00000557958 LRP5O75197 1615 aa20.2■□□□□ 0.82
LDLR-206ENST00000557958 ST5P78524 1137 aa20.2■□□□□ 0.82
LDLR-206ENST00000557958 MCMDC2Q4G0Z9 681 aa20.2■□□□□ 0.82
LDLR-206ENST00000557958 PRPF40BQ6NWY9 871 aaKnown RBP20.2■□□□□ 0.82
LDLR-206ENST00000557958 UPF3BQ9BZI7 483 aaKnown RBP20.2■□□□□ 0.82
LDLR-206ENST00000557958 TM6SF1Q9BZW5 370 aa20.2■□□□□ 0.82
LDLR-206ENST00000557958 POLRMTO00411 1230 aaKnown RBP20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms