RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 HSP90AA4PQ58FG1 418 aa14.54□□□□□ -0.08
LDLR-205ENST00000557933 TMX1Q9H3N1 280 aa14.54□□□□□ -0.08
LDLR-205ENST00000557933 PODXL2Q9NZ53 605 aa14.54□□□□□ -0.08
LDLR-205ENST00000557933 COL18A1P39060 1754 aa14.54□□□□□ -0.08
LDLR-205ENST00000557933 BECN2A8MW95 431 aa14.54□□□□□ -0.08
LDLR-205ENST00000557933 RIC3Q7Z5B4 369 aa14.54□□□□□ -0.08
LDLR-205ENST00000557933 COL15A1P39059 1388 aa14.53□□□□□ -0.08
LDLR-205ENST00000557933 TTC41PQ6P2S7 1318 aa14.53□□□□□ -0.08
LDLR-205ENST00000557933 SKILP12757 684 aa14.53□□□□□ -0.08
LDLR-205ENST00000557933 ELF2Q15723 593 aa14.53□□□□□ -0.08
LDLR-205ENST00000557933 ORAI2Q96SN7 254 aa14.53□□□□□ -0.08
LDLR-205ENST00000557933 CLSTN2Q9H4D0 955 aa14.53□□□□□ -0.08
LDLR-205ENST00000557933 GOLGA8FQ08AF8 430 aa14.53□□□□□ -0.08
LDLR-205ENST00000557933 GOLGA8DPQ0D2H9 430 aa14.53□□□□□ -0.08
LDLR-205ENST00000557933 HSP90AB4PQ58FF6 505 aa14.53□□□□□ -0.08
LDLR-205ENST00000557933 CEP135Q66GS9 1140 aa14.53□□□□□ -0.08
LDLR-205ENST00000557933 CCAR1Q8IX12 1150 aaKnown RBP14.53□□□□□ -0.08
LDLR-205ENST00000557933 ANKRD7Q92527 254 aa14.53□□□□□ -0.08
LDLR-205ENST00000557933 GRM8O00222 908 aa14.52□□□□□ -0.08
LDLR-205ENST00000557933 ME1P48163 572 aa14.52□□□□□ -0.08
LDLR-205ENST00000557933 SCRN1Q12765 414 aa14.52□□□□□ -0.08
LDLR-205ENST00000557933 AOPEPQ8N6M6 819 aa14.52□□□□□ -0.08
LDLR-205ENST00000557933 MYD88Q99836 296 aa14.52□□□□□ -0.08
LDLR-205ENST00000557933 SOS2Q07890 1332 aaPredicted RBP14.52□□□□□ -0.08
LDLR-205ENST00000557933 A0A1B0GVL5 298 aa14.52□□□□□ -0.09
LDLR-205ENST00000557933 POLR3DP05423 398 aaPredicted RBP14.52□□□□□ -0.09
LDLR-205ENST00000557933 USP28Q96RU2 1077 aa14.52□□□□□ -0.09
LDLR-205ENST00000557933 SCAND2PQ9GZW5 306 aaPredicted RBP14.52□□□□□ -0.09
LDLR-205ENST00000557933 CYP21A2P08686 494 aa14.52□□□□□ -0.09
LDLR-205ENST00000557933 TFCP2Q12800 502 aa14.52□□□□□ -0.09
LDLR-205ENST00000557933 IL17RAQ96F46 866 aa14.52□□□□□ -0.09
LDLR-205ENST00000557933 NEUROD6Q96NK8 337 aa14.52□□□□□ -0.09
LDLR-205ENST00000557933 DBNDD2Q9BQY9 259 aa14.52□□□□□ -0.09
LDLR-205ENST00000557933 DBF4Q9UBU7 674 aaPredicted RBP14.52□□□□□ -0.09
LDLR-205ENST00000557933 TUBGCP6Q96RT7 1819 aa14.51□□□□□ -0.09
LDLR-205ENST00000557933 TAF5LO75529 589 aa14.51□□□□□ -0.09
LDLR-205ENST00000557933 PSMA5P28066 241 aa14.51□□□□□ -0.09
LDLR-205ENST00000557933 STOX1Q6ZVD7 989 aa14.51□□□□□ -0.09
LDLR-205ENST00000557933 PLA2G4DQ86XP0 818 aa14.51□□□□□ -0.09
LDLR-205ENST00000557933 CCDC85AQ96PX6 553 aaPredicted RBP14.51□□□□□ -0.09
LDLR-205ENST00000557933 DBNLQ9UJU6 430 aaKnown RBP14.51□□□□□ -0.09
LDLR-205ENST00000557933 ROBO1Q9Y6N7 1651 aa14.51□□□□□ -0.09
LDLR-205ENST00000557933 CCDC69A6NI79 296 aa14.51□□□□□ -0.09
LDLR-205ENST00000557933 HAND2P61296 217 aa14.51□□□□□ -0.09
LDLR-205ENST00000557933 KRT28Q7Z3Y7 464 aa14.51□□□□□ -0.09
LDLR-205ENST00000557933 FAM177A1Q8N128 213 aaPredicted RBP14.51□□□□□ -0.09
LDLR-205ENST00000557933 CTIFO43310 598 aaKnown RBP14.5□□□□□ -0.09
LDLR-205ENST00000557933 IGKV5-2P06315 115 aa14.5□□□□□ -0.09
LDLR-205ENST00000557933 RNF20Q5VTR2 975 aa14.5□□□□□ -0.09
LDLR-205ENST00000557933 TTLL5Q6EMB2 1281 aa14.5□□□□□ -0.09
LDLR-205ENST00000557933 BRINP3Q76B58 766 aa14.5□□□□□ -0.09
LDLR-205ENST00000557933 NEK1Q96PY6 1258 aa14.5□□□□□ -0.09
LDLR-205ENST00000557933 CTNNA3Q9UI47 895 aa14.5□□□□□ -0.09
LDLR-205ENST00000557933 PDCP20941 246 aa14.5□□□□□ -0.09
LDLR-205ENST00000557933 KMT5BQ4FZB7 885 aa14.5□□□□□ -0.09
LDLR-205ENST00000557933 KSR2Q6VAB6 950 aa14.5□□□□□ -0.09
LDLR-205ENST00000557933 UBE3BQ7Z3V4 1068 aa14.5□□□□□ -0.09
LDLR-205ENST00000557933 LRRC8AQ8IWT6 810 aa14.5□□□□□ -0.09
LDLR-205ENST00000557933 CPDO75976 1380 aa14.49□□□□□ -0.09
LDLR-205ENST00000557933 GIGYF1O75420 1035 aaPredicted RBP14.49□□□□□ -0.09
LDLR-205ENST00000557933 TM6SF1Q9BZW5 370 aa14.49□□□□□ -0.09
LDLR-205ENST00000557933 SPATA31A3Q5VYP0 1347 aa14.49□□□□□ -0.09
LDLR-205ENST00000557933 SMC2O95347 1197 aa14.49□□□□□ -0.09
LDLR-205ENST00000557933 RESTQ13127 1097 aa14.49□□□□□ -0.09
LDLR-205ENST00000557933 C1orf141Q5JVX7 400 aa14.49□□□□□ -0.09
LDLR-205ENST00000557933 GTF3C6Q969F1 213 aa14.49□□□□□ -0.09
LDLR-205ENST00000557933 DDX19AQ9NUU7 478 aaKnown RBP14.49□□□□□ -0.09
LDLR-205ENST00000557933 SLAIN2Q9P270 581 aa14.49□□□□□ -0.09
LDLR-205ENST00000557933 PTPN14Q15678 1187 aa14.48□□□□□ -0.09
LDLR-205ENST00000557933 COPS6Q7L5N1 327 aa14.48□□□□□ -0.09
LDLR-205ENST00000557933 FSIP1Q8NA03 581 aa14.48□□□□□ -0.09
LDLR-205ENST00000557933 XAGE3Q8WTP9 111 aa14.48□□□□□ -0.09
LDLR-205ENST00000557933 EPC1Q9H2F5 836 aa14.48□□□□□ -0.09
LDLR-205ENST00000557933 SMTNL1A8MU46 457 aa14.48□□□□□ -0.09
LDLR-205ENST00000557933 GOLIM4O00461 696 aa14.48□□□□□ -0.09
LDLR-205ENST00000557933 HTATSF1O43719 755 aaKnown RBP14.48□□□□□ -0.09
LDLR-205ENST00000557933 TIMM10P62072 90 aa14.48□□□□□ -0.09
LDLR-205ENST00000557933 SDF4Q9BRK5 362 aa14.48□□□□□ -0.09
LDLR-205ENST00000557933 SNRKQ9NRH2 765 aa14.48□□□□□ -0.09
LDLR-205ENST00000557933 PTPDC1A2A3K4 754 aa14.48□□□□□ -0.09
LDLR-205ENST00000557933 FBXO38Q6PIJ6 1188 aa14.48□□□□□ -0.09
LDLR-205ENST00000557933 TDRD7Q8NHU6 1098 aaKnown RBP14.48□□□□□ -0.09
LDLR-205ENST00000557933 IQCB1Q15051 598 aa14.47□□□□□ -0.09
LDLR-205ENST00000557933 ZC3H6P61129 1189 aaKnown RBP14.47□□□□□ -0.09
LDLR-205ENST00000557933 ERCC6LQ2NKX8 1250 aa14.47□□□□□ -0.09
LDLR-205ENST00000557933 DPCR1Q3MIW9 517 aa14.46□□□□□ -0.09
LDLR-205ENST00000557933 ZNF330Q9Y3S2 320 aaPredicted RBP14.46□□□□□ -0.09
LDLR-205ENST00000557933 KINO60870 393 aaKnown RBP14.46□□□□□ -0.09
LDLR-205ENST00000557933 CTDNEP1O95476 244 aa14.46□□□□□ -0.09
LDLR-205ENST00000557933 RXRAP19793 462 aa14.46□□□□□ -0.09
LDLR-205ENST00000557933 SYT10Q6XYQ8 523 aa14.46□□□□□ -0.09
LDLR-205ENST00000557933 CCDC73Q6ZRK6 1079 aa14.46□□□□□ -0.09
LDLR-205ENST00000557933 LRRC37A3O60309 1634 aa14.46□□□□□ -0.1
LDLR-205ENST00000557933 VGLL3A8MV65 326 aa14.45□□□□□ -0.1
LDLR-205ENST00000557933 RNMTO43148 476 aaKnown RBP14.45□□□□□ -0.1
LDLR-205ENST00000557933 UTP14CQ5TAP6 766 aaKnown RBP14.45□□□□□ -0.1
LDLR-205ENST00000557933 TMC6Q7Z403 805 aa14.45□□□□□ -0.1
LDLR-205ENST00000557933 ELP1O95163 1332 aa14.45□□□□□ -0.1
LDLR-205ENST00000557933 TPM3P06753 285 aa14.45□□□□□ -0.1
LDLR-205ENST00000557933 LMOD1P29536 600 aaPredicted RBP14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms