RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 POLLQ9UGP5 575 aa15.72■□□□□ 0.11
SHMT2-214ENST00000554604 G3V3G9 751 aa15.71■□□□□ 0.11
SHMT2-214ENST00000554604 UFL1O94874 794 aa15.71■□□□□ 0.11
SHMT2-214ENST00000554604 EPS15P42566 896 aa15.71■□□□□ 0.11
SHMT2-214ENST00000554604 SCNN1DP51172 638 aa15.71■□□□□ 0.11
SHMT2-214ENST00000554604 DCAF8Q5TAQ9 597 aa15.71■□□□□ 0.11
SHMT2-214ENST00000554604 TBC1D16Q8TBP0 767 aa15.71■□□□□ 0.11
SHMT2-214ENST00000554604 BCL2L13Q9BXK5 485 aa15.71■□□□□ 0.11
SHMT2-214ENST00000554604 ZC3H12CQ9C0D7 883 aaKnown RBP15.71■□□□□ 0.11
SHMT2-214ENST00000554604 GREM2Q9H772 168 aa15.71■□□□□ 0.11
SHMT2-214ENST00000554604 GGA1Q9UJY5 639 aa15.71■□□□□ 0.11
SHMT2-214ENST00000554604 ADAMTSL1Q8N6G6 1762 aa15.7■□□□□ 0.1
SHMT2-214ENST00000554604 KLRG1Q96E93 195 aa15.7■□□□□ 0.1
SHMT2-214ENST00000554604 DBNDD1Q9H9R9 158 aa15.7■□□□□ 0.1
SHMT2-214ENST00000554604 PODXL2Q9NZ53 605 aa15.7■□□□□ 0.1
SHMT2-214ENST00000554604 GPRC5DQ9NZD1 345 aa15.7■□□□□ 0.1
SHMT2-214ENST00000554604 XDHP47989 1333 aa15.69■□□□□ 0.1
SHMT2-214ENST00000554604 GMPSP49915 693 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-214ENST00000554604 SLC4A10Q6U841 1118 aa15.69■□□□□ 0.1
SHMT2-214ENST00000554604 GPR101Q96P66 508 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-214ENST00000554604 PLA2G12BQ9BX93 195 aa15.69■□□□□ 0.1
SHMT2-214ENST00000554604 RTL9Q8NET4 1388 aa15.69■□□□□ 0.1
SHMT2-214ENST00000554604 YDJCA8MPS7 323 aa15.68■□□□□ 0.1
SHMT2-214ENST00000554604 ECE2O60344 883 aa15.68■□□□□ 0.1
SHMT2-214ENST00000554604 IGHMBP2P38935 993 aaKnown RBP15.68■□□□□ 0.1
SHMT2-214ENST00000554604 DOK7Q18PE1 504 aa15.68■□□□□ 0.1
SHMT2-214ENST00000554604 BEND3Q5T5X7 828 aa15.68■□□□□ 0.1
SHMT2-214ENST00000554604 MAP1SQ66K74 1059 aaPredicted RBP15.68■□□□□ 0.1
SHMT2-214ENST00000554604 USP50Q70EL3 339 aaPredicted RBP15.68■□□□□ 0.1
SHMT2-214ENST00000554604 CNTROBQ8N137 903 aa15.68■□□□□ 0.1
SHMT2-214ENST00000554604 ADARB2Q9NS39 739 aaKnown RBP15.68■□□□□ 0.1
SHMT2-214ENST00000554604 BSDC1Q9NW68 430 aaPredicted RBP15.68■□□□□ 0.1
SHMT2-214ENST00000554604 SCN9AQ15858 1988 aa15.67■□□□□ 0.1
SHMT2-214ENST00000554604 ITGA6P23229 1130 aa15.67■□□□□ 0.1
SHMT2-214ENST00000554604 CASP7P55210 303 aa15.67■□□□□ 0.1
SHMT2-214ENST00000554604 FAM161AQ3B820 660 aa15.67■□□□□ 0.1
SHMT2-214ENST00000554604 MPHOSPH8Q99549 860 aa15.67■□□□□ 0.1
SHMT2-214ENST00000554604 CREBZFQ9NS37 354 aa15.67■□□□□ 0.1
SHMT2-214ENST00000554604 C9orf78Q9NZ63 289 aaPredicted RBP15.67■□□□□ 0.1
SHMT2-214ENST00000554604 PCNTO95613 3336 aa15.67■□□□□ 0.1
SHMT2-214ENST00000554604 TRPM7Q96QT4 1865 aa15.66■□□□□ 0.1
SHMT2-214ENST00000554604 ITGBL1O95965 494 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-214ENST00000554604 ATP2B4P23634 1241 aa15.66■□□□□ 0.1
SHMT2-214ENST00000554604 SRCIN1Q9C0H9 1055 aa15.66■□□□□ 0.1
SHMT2-214ENST00000554604 CHMP3Q9Y3E7 222 aa15.66■□□□□ 0.1
SHMT2-214ENST00000554604 PASKQ96RG2 1323 aa15.66■□□□□ 0.1
SHMT2-214ENST00000554604 H7C1D1 291 aa15.65■□□□□ 0.1
SHMT2-214ENST00000554604 GRM8O00222 908 aa15.65■□□□□ 0.1
SHMT2-214ENST00000554604 PSMD14O00487 310 aa15.65■□□□□ 0.1
SHMT2-214ENST00000554604 ALDH1L1O75891 902 aa15.65■□□□□ 0.1
SHMT2-214ENST00000554604 CSF1RP07333 972 aa15.65■□□□□ 0.1
SHMT2-214ENST00000554604 CNOT7Q9UIV1 285 aaKnown RBP15.65■□□□□ 0.1
SHMT2-214ENST00000554604 MINPP1Q9UNW1 487 aa15.65■□□□□ 0.1
SHMT2-214ENST00000554604 PSME4Q14997 1843 aa15.65■□□□□ 0.1
SHMT2-214ENST00000554604 POLR2AP24928 1970 aaKnown RBP15.65■□□□□ 0.1
SHMT2-214ENST00000554604 ANKRD18BA2A2Z9 1011 aa15.64■□□□□ 0.09
SHMT2-214ENST00000554604 IFIT5Q13325 482 aaKnown RBP15.64■□□□□ 0.09
SHMT2-214ENST00000554604 MRPL50Q8N5N7 158 aaKnown RBP15.64■□□□□ 0.09
SHMT2-214ENST00000554604 TSHZ2Q9NRE2 1034 aa15.64■□□□□ 0.09
SHMT2-214ENST00000554604 ZBTB12Q9Y330 459 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-214ENST00000554604 TMEM88BA6NKF7 163 aa15.63■□□□□ 0.09
SHMT2-214ENST00000554604 RPS12P25398 132 aaKnown RBP15.63■□□□□ 0.09
SHMT2-214ENST00000554604 CCT4P50991 539 aaKnown RBP15.63■□□□□ 0.09
SHMT2-214ENST00000554604 B4GALNT3Q6L9W6 998 aa15.63■□□□□ 0.09
SHMT2-214ENST00000554604 MICALL2Q8IY33 904 aa15.63■□□□□ 0.09
SHMT2-214ENST00000554604 SSH1Q8WYL5 1049 aa15.63■□□□□ 0.09
SHMT2-214ENST00000554604 DPF2Q92785 391 aa15.63■□□□□ 0.09
SHMT2-214ENST00000554604 ANKRD2Q9GZV1 360 aa15.63■□□□□ 0.09
SHMT2-214ENST00000554604 KCNQ5Q9NR82 932 aa15.63■□□□□ 0.09
SHMT2-214ENST00000554604 PTPRCP08575 1304 aa15.63■□□□□ 0.09
SHMT2-214ENST00000554604 FOXO4P98177 505 aa15.62■□□□□ 0.09
SHMT2-214ENST00000554604 TAF7LQ5H9L4 462 aa15.62■□□□□ 0.09
SHMT2-214ENST00000554604 LMBR1LQ6UX01 489 aa15.62■□□□□ 0.09
SHMT2-214ENST00000554604 JMYQ8N9B5 988 aa15.62■□□□□ 0.09
SHMT2-214ENST00000554604 MKRN1Q9UHC7 482 aaKnown RBP15.62■□□□□ 0.09
SHMT2-214ENST00000554604 KCNJ4P48050 445 aa15.61■□□□□ 0.09
SHMT2-214ENST00000554604 CCDC57Q2TAC2 916 aa15.61■□□□□ 0.09
SHMT2-214ENST00000554604 ALDH1L2Q3SY69 923 aa15.61■□□□□ 0.09
SHMT2-214ENST00000554604 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.61■□□□□ 0.09
SHMT2-214ENST00000554604 SMC4Q9NTJ3 1288 aa15.61■□□□□ 0.09
SHMT2-214ENST00000554604 LEMD3Q9Y2U8 911 aa15.61■□□□□ 0.09
SHMT2-214ENST00000554604 MED23Q9ULK4 1368 aa15.61■□□□□ 0.09
SHMT2-214ENST00000554604 SHTN1A0MZ66 631 aa15.6■□□□□ 0.09
SHMT2-214ENST00000554604 WTIPA6NIX2 430 aaPredicted RBP15.6■□□□□ 0.09
SHMT2-214ENST00000554604 VIL1P09327 827 aaKnown RBP15.6■□□□□ 0.09
SHMT2-214ENST00000554604 CT47B1P0C2W7 299 aaPredicted RBP15.6■□□□□ 0.09
SHMT2-214ENST00000554604 PODNQ7Z5L7 613 aa15.6■□□□□ 0.09
SHMT2-214ENST00000554604 TRPM4Q8TD43 1214 aa15.6■□□□□ 0.09
SHMT2-214ENST00000554604 ZC3H15Q8WU90 426 aaKnown RBP15.6■□□□□ 0.09
SHMT2-214ENST00000554604 CCDC136Q96JN2 1154 aa15.6■□□□□ 0.09
SHMT2-214ENST00000554604 ZNF804BA4D1E1 1349 aa15.6■□□□□ 0.09
SHMT2-214ENST00000554604 A0A1B0GUL6 1792 aa15.59■□□□□ 0.09
SHMT2-214ENST00000554604 CHRNDQ07001 517 aa15.59■□□□□ 0.09
SHMT2-214ENST00000554604 TBC1D10BQ4KMP7 808 aaPredicted RBP15.59■□□□□ 0.09
SHMT2-214ENST00000554604 EPHA10Q5JZY3 1008 aa15.59■□□□□ 0.09
SHMT2-214ENST00000554604 SAMD7Q7Z3H4 446 aa15.59■□□□□ 0.09
SHMT2-214ENST00000554604 EXOC6Q8TAG9 804 aa15.59■□□□□ 0.09
SHMT2-214ENST00000554604 ABT1Q9ULW3 272 aaKnown RBP15.59■□□□□ 0.09
SHMT2-214ENST00000554604 USP17L3A6NCW0 530 aa15.58■□□□□ 0.08
SHMT2-214ENST00000554604 USP17L4A6NCW7 530 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms