RNA–Protein interactions for RNA: ENST00000554310.5

SHMT2-211, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 579 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-211ENST00000554310 ITGA6P23229 1130 aa16.52■□□□□ 0.24
SHMT2-211ENST00000554310 LMOD1P29536 600 aaPredicted RBP16.52■□□□□ 0.24
SHMT2-211ENST00000554310 EPHX2P34913 555 aa16.52■□□□□ 0.24
SHMT2-211ENST00000554310 IGHMBP2P38935 993 aaKnown RBP16.52■□□□□ 0.24
SHMT2-211ENST00000554310 APLP1P51693 650 aa16.52■□□□□ 0.24
SHMT2-211ENST00000554310 HNRNPUQ00839 825 aaKnown RBP eCLIP16.52■□□□□ 0.24
SHMT2-211ENST00000554310 BRPF1P55201 1214 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-211ENST00000554310 CXCL9Q07325 125 aa16.51■□□□□ 0.23
SHMT2-211ENST00000554310 CIAPIN1Q6FI81 312 aa16.51■□□□□ 0.23
SHMT2-211ENST00000554310 PNMA8AQ86V59 439 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-211ENST00000554310 LDHDQ86WU2 507 aa16.51■□□□□ 0.23
SHMT2-211ENST00000554310 PSME4Q14997 1843 aa16.51■□□□□ 0.23
SHMT2-211ENST00000554310 CEP350Q5VT06 3117 aa16.5■□□□□ 0.23
SHMT2-211ENST00000554310 UTYO14607 1347 aa16.5■□□□□ 0.23
SHMT2-211ENST00000554310 ANKRD18BA2A2Z9 1011 aa16.5■□□□□ 0.23
SHMT2-211ENST00000554310 SCNN1DP51172 638 aa16.5■□□□□ 0.23
SHMT2-211ENST00000554310 FOXO4P98177 505 aa16.5■□□□□ 0.23
SHMT2-211ENST00000554310 TNIP1Q15025 636 aa16.5■□□□□ 0.23
SHMT2-211ENST00000554310 CHADLQ6NUI6 762 aa16.5■□□□□ 0.23
SHMT2-211ENST00000554310 YDJCA8MPS7 323 aa16.49■□□□□ 0.23
SHMT2-211ENST00000554310 RIMBP2O15034 1052 aa16.49■□□□□ 0.23
SHMT2-211ENST00000554310 ATP2B4P23634 1241 aa16.49■□□□□ 0.23
SHMT2-211ENST00000554310 MPHOSPH8Q99549 860 aa16.49■□□□□ 0.23
SHMT2-211ENST00000554310 ZC3H12CQ9C0D7 883 aaKnown RBP16.49■□□□□ 0.23
SHMT2-211ENST00000554310 DBNDD1Q9H9R9 158 aa16.49■□□□□ 0.23
SHMT2-211ENST00000554310 MINPP1Q9UNW1 487 aa16.49■□□□□ 0.23
SHMT2-211ENST00000554310 GTF3C3Q9Y5Q9 886 aa16.49■□□□□ 0.23
SHMT2-211ENST00000554310 MED23Q9ULK4 1368 aa16.49■□□□□ 0.23
SHMT2-211ENST00000554310 KIF16BQ96L93 1317 aa16.48■□□□□ 0.23
SHMT2-211ENST00000554310 SCN9AQ15858 1988 aa16.48■□□□□ 0.23
SHMT2-211ENST00000554310 ECE2O60344 883 aa16.48■□□□□ 0.23
SHMT2-211ENST00000554310 RAD17O75943 681 aa16.48■□□□□ 0.23
SHMT2-211ENST00000554310 POTEIP0CG38 1075 aa16.48■□□□□ 0.23
SHMT2-211ENST00000554310 POTEJP0CG39 1038 aa16.48■□□□□ 0.23
SHMT2-211ENST00000554310 IFIT5Q13325 482 aaKnown RBP16.48■□□□□ 0.23
SHMT2-211ENST00000554310 EAPPQ56P03 285 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-211ENST00000554310 GPR101Q96P66 508 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-211ENST00000554310 ANKRD2Q9GZV1 360 aa16.48■□□□□ 0.23
SHMT2-211ENST00000554310 GPRC5DQ9NZD1 345 aa16.48■□□□□ 0.23
SHMT2-211ENST00000554310 CHMP3Q9Y3E7 222 aa16.48■□□□□ 0.23
SHMT2-211ENST00000554310 ZBED9Q6R2W3 1325 aa16.47■□□□□ 0.23
SHMT2-211ENST00000554310 RARSP54136 660 aaKnown RBP16.47■□□□□ 0.23
SHMT2-211ENST00000554310 EPHA10Q5JZY3 1008 aa16.47■□□□□ 0.23
SHMT2-211ENST00000554310 LMBR1LQ6UX01 489 aa16.47■□□□□ 0.23
SHMT2-211ENST00000554310 API5Q9BZZ5 524 aaKnown RBP16.47■□□□□ 0.23
SHMT2-211ENST00000554310 ZNF609O15014 1411 aa16.46■□□□□ 0.23
SHMT2-211ENST00000554310 G3V3G9 751 aa16.46■□□□□ 0.23
SHMT2-211ENST00000554310 NBPF7P0C2Y1 421 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-211ENST00000554310 EPS15P42566 896 aa16.46■□□□□ 0.23
SHMT2-211ENST00000554310 GMPSP49915 693 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-211ENST00000554310 CCT4P50991 539 aaKnown RBP16.46■□□□□ 0.23
SHMT2-211ENST00000554310 CCDC57Q2TAC2 916 aa16.46■□□□□ 0.23
SHMT2-211ENST00000554310 DCAF8Q5TAQ9 597 aa16.46■□□□□ 0.23
SHMT2-211ENST00000554310 SUCLG2Q96I99 432 aa16.46■□□□□ 0.23
SHMT2-211ENST00000554310 LEMD3Q9Y2U8 911 aa16.46■□□□□ 0.23
SHMT2-211ENST00000554310 DOK7Q18PE1 504 aa16.45■□□□□ 0.22
SHMT2-211ENST00000554310 USP50Q70EL3 339 aaPredicted RBP16.45■□□□□ 0.22
SHMT2-211ENST00000554310 ADARB2Q9NS39 739 aaKnown RBP16.45■□□□□ 0.22
SHMT2-211ENST00000554310 NOB1Q9ULX3 412 aaKnown RBP16.45■□□□□ 0.22
SHMT2-211ENST00000554310 PSMD14O00487 310 aa16.44■□□□□ 0.22
SHMT2-211ENST00000554310 RPS12P25398 132 aaKnown RBP16.44■□□□□ 0.22
SHMT2-211ENST00000554310 RABL6Q3YEC7 729 aaPredicted RBP16.44■□□□□ 0.22
SHMT2-211ENST00000554310 TAF7LQ5H9L4 462 aa16.44■□□□□ 0.22
SHMT2-211ENST00000554310 ARHGAP45Q92619 1136 aa16.44■□□□□ 0.22
SHMT2-211ENST00000554310 KAZALD1Q96I82 304 aa16.44■□□□□ 0.22
SHMT2-211ENST00000554310 CLEC11AQ9Y240 323 aa16.44■□□□□ 0.22
SHMT2-211ENST00000554310 ZNF804BA4D1E1 1349 aa16.44■□□□□ 0.22
SHMT2-211ENST00000554310 ZNF646O15015 1829 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-211ENST00000554310 CHRNDQ07001 517 aa16.43■□□□□ 0.22
SHMT2-211ENST00000554310 DPF2Q92785 391 aa16.43■□□□□ 0.22
SHMT2-211ENST00000554310 USP44Q9H0E7 712 aa16.43■□□□□ 0.22
SHMT2-211ENST00000554310 BICC1Q9H694 974 aaKnown RBP16.43■□□□□ 0.22
SHMT2-211ENST00000554310 PASKQ96RG2 1323 aa16.43■□□□□ 0.22
SHMT2-211ENST00000554310 KCNJ4P48050 445 aa16.42■□□□□ 0.22
SHMT2-211ENST00000554310 PODNQ7Z5L7 613 aa16.42■□□□□ 0.22
SHMT2-211ENST00000554310 ANKRD44Q8N8A2 993 aa16.42■□□□□ 0.22
SHMT2-211ENST00000554310 LDHAL6AQ6ZMR3 332 aa16.41■□□□□ 0.22
SHMT2-211ENST00000554310 MICALL2Q8IY33 904 aa16.41■□□□□ 0.22
SHMT2-211ENST00000554310 COA1Q9GZY4 146 aa16.41■□□□□ 0.22
SHMT2-211ENST00000554310 CNNM1Q9NRU3 951 aa16.41■□□□□ 0.22
SHMT2-211ENST00000554310 H7C1D1 291 aa16.4■□□□□ 0.22
SHMT2-211ENST00000554310 IPO8O15397 1037 aaKnown RBP16.4■□□□□ 0.22
SHMT2-211ENST00000554310 ITGBL1O95965 494 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-211ENST00000554310 VIL1P09327 827 aaKnown RBP16.4■□□□□ 0.22
SHMT2-211ENST00000554310 ZNF594Q96JF6 807 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-211ENST00000554310 KCNQ5Q9NR82 932 aa16.4■□□□□ 0.22
SHMT2-211ENST00000554310 CNOT7Q9UIV1 285 aaKnown RBP16.4■□□□□ 0.22
SHMT2-211ENST00000554310 ZBTB12Q9Y330 459 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-211ENST00000554310 WTIPA6NIX2 430 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-211ENST00000554310 UBTFL1P0CB47 393 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-211ENST00000554310 HTRA3P83110 453 aa16.39■□□□□ 0.21
SHMT2-211ENST00000554310 MAP1SQ66K74 1059 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-211ENST00000554310 C15orf52Q6ZUT6 534 aaKnown RBP16.39■□□□□ 0.21
SHMT2-211ENST00000554310 CNTROBQ8N137 903 aa16.39■□□□□ 0.21
SHMT2-211ENST00000554310 AGBL3Q8NEM8 1001 aa16.39■□□□□ 0.21
SHMT2-211ENST00000554310 ZC3H15Q8WU90 426 aaKnown RBP16.39■□□□□ 0.21
SHMT2-211ENST00000554310 CREBZFQ9NS37 354 aa16.39■□□□□ 0.21
SHMT2-211ENST00000554310 HDAC5Q9UQL6 1122 aa16.39■□□□□ 0.21
SHMT2-211ENST00000554310 TRPM7Q96QT4 1865 aa16.38■□□□□ 0.21
SHMT2-211ENST00000554310 USP17L3A6NCW0 530 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 141.2 ms