RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 MCMDC2Q4G0Z9 681 aa6.64□□□□□ -1.35
LIMA1-215ENST00000552823 ATG9AQ7Z3C6 839 aa6.64□□□□□ -1.35
LIMA1-215ENST00000552823 MAP4K1Q92918 833 aa6.64□□□□□ -1.35
LIMA1-215ENST00000552823 NFAT5O94916 1531 aa6.64□□□□□ -1.35
LIMA1-215ENST00000552823 LTN1O94822 1766 aa6.64□□□□□ -1.35
LIMA1-215ENST00000552823 POLR3DP05423 398 aaPredicted RBP6.64□□□□□ -1.35
LIMA1-215ENST00000552823 MSNP26038 577 aaKnown RBP6.64□□□□□ -1.35
LIMA1-215ENST00000552823 TCIRG1Q13488 830 aa6.64□□□□□ -1.35
LIMA1-215ENST00000552823 CUL4AQ13619 759 aa6.64□□□□□ -1.35
LIMA1-215ENST00000552823 FAM98CQ17RN3 349 aaKnown RBP6.64□□□□□ -1.35
LIMA1-215ENST00000552823 TTC14Q96N46 770 aa6.64□□□□□ -1.35
LIMA1-215ENST00000552823 C8orf37Q96NL8 207 aa6.64□□□□□ -1.35
LIMA1-215ENST00000552823 SLC4A9Q96Q91 983 aa6.64□□□□□ -1.35
LIMA1-215ENST00000552823 CARD10Q9BWT7 1032 aa6.64□□□□□ -1.35
LIMA1-215ENST00000552823 TOPAZ1Q8N9V7 1692 aa6.64□□□□□ -1.35
LIMA1-215ENST00000552823 H7C1W4 665 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 ATP5JP18859 108 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 ST3GAL1Q11201 340 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 ATP2B3Q16720 1220 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 STOX1Q6ZVD7 989 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 PTF1AQ7RTS3 328 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 MIGA1Q8NAN2 632 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 OSBP2Q969R2 916 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 ZKSCAN3Q9BRR0 538 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 MYL10Q9BUA6 226 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 MTMR6Q9Y217 621 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 FMN2Q9NZ56 1722 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 TNS3Q68CZ2 1445 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 M0R2C6 588 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 IL15P40933 162 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-215ENST00000552823 ISM2Q6H9L7 571 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 LRP10Q7Z4F1 713 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 MPHOSPH8Q99549 860 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 TSPY26PQ9H489 355 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 ZSWIM6Q9HCJ5 1215 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 NCOA3Q9Y6Q9 1424 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 XRN1Q8IZH2 1706 aaKnown RBP6.63□□□□□ -1.35
LIMA1-215ENST00000552823 HIP1O00291 1037 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 PHF14O94880 888 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 RPS6KB1P23443 525 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 PHKA1P46020 1223 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 DDB1Q16531 1140 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 SLC9C2Q5TAH2 1124 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 DRC7Q8IY82 874 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 FAM43AQ8N2R8 423 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 KBTBD3Q8NAB2 608 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 NGLY1Q96IV0 654 aa6.63□□□□□ -1.35
LIMA1-215ENST00000552823 PUS7LQ9H0K6 701 aaKnown RBP6.63□□□□□ -1.35
LIMA1-215ENST00000552823 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.63□□□□□ -1.352e-8■■■■■ 37.9
LIMA1-215ENST00000552823 ERVV-2B6SEH9 535 aa6.62□□□□□ -1.35
LIMA1-215ENST00000552823 LIG1P18858 919 aa6.62□□□□□ -1.35
LIMA1-215ENST00000552823 TOB2Q14106 344 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-215ENST00000552823 CMTR1Q8N1G2 835 aaKnown RBP6.62□□□□□ -1.35
LIMA1-215ENST00000552823 CCDC191Q8NCU4 936 aa6.62□□□□□ -1.35
LIMA1-215ENST00000552823 NIP7Q9Y221 180 aaKnown RBP eCLIP6.62□□□□□ -1.35
LIMA1-215ENST00000552823 RGPD5Q99666 1765 aa6.62□□□□□ -1.35
LIMA1-215ENST00000552823 AOX1Q06278 1338 aa6.62□□□□□ -1.35
LIMA1-215ENST00000552823 ANKRD18BA2A2Z9 1011 aa6.62□□□□□ -1.35
LIMA1-215ENST00000552823 RGPD1P0DJD0 1748 aa6.62□□□□□ -1.35
LIMA1-215ENST00000552823 HSPD1P10809 573 aaKnown RBP6.62□□□□□ -1.35
LIMA1-215ENST00000552823 TTC6Q86TZ1 520 aa6.62□□□□□ -1.35
LIMA1-215ENST00000552823 CNKSR2Q8WXI2 1034 aa6.62□□□□□ -1.35
LIMA1-215ENST00000552823 SPATA32Q96LK8 384 aa6.62□□□□□ -1.35
LIMA1-215ENST00000552823 MINDY4BA8MYZ0 360 aa6.61□□□□□ -1.35
LIMA1-215ENST00000552823 CPLX1O14810 134 aa6.61□□□□□ -1.35
LIMA1-215ENST00000552823 CHAF1AQ13111 956 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-215ENST00000552823 LRSAM1Q6UWE0 723 aa6.61□□□□□ -1.35
LIMA1-215ENST00000552823 NFXL1Q6ZNB6 911 aa6.61□□□□□ -1.35
LIMA1-215ENST00000552823 RALYLQ86SE5 291 aaKnown RBP6.61□□□□□ -1.35
LIMA1-215ENST00000552823 INTS4Q96HW7 963 aaKnown RBP6.61□□□□□ -1.35
LIMA1-215ENST00000552823 HAUS7Q99871 368 aa6.61□□□□□ -1.35
LIMA1-215ENST00000552823 TTC12Q9H892 705 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-215ENST00000552823 R3HCC1Q9Y3T6 440 aaKnown RBP6.61□□□□□ -1.35
LIMA1-215ENST00000552823 COL15A1P39059 1388 aa6.61□□□□□ -1.35
LIMA1-215ENST00000552823 VIRMAQ69YN4 1812 aaKnown RBP6.61□□□□□ -1.35
LIMA1-215ENST00000552823 RNF113AO15541 343 aaKnown RBP6.61□□□□□ -1.35
LIMA1-215ENST00000552823 MBD3O95983 291 aa6.61□□□□□ -1.35
LIMA1-215ENST00000552823 PTMSP20962 102 aa6.61□□□□□ -1.35
LIMA1-215ENST00000552823 BCAMP50895 628 aa6.61□□□□□ -1.35
LIMA1-215ENST00000552823 CASP7P55210 303 aa6.61□□□□□ -1.35
LIMA1-215ENST00000552823 SF3A1Q15459 793 aaKnown RBP6.61□□□□□ -1.35
LIMA1-215ENST00000552823 MICU3Q86XE3 530 aa6.61□□□□□ -1.35
LIMA1-215ENST00000552823 SYAP1Q96A49 352 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-215ENST00000552823 DACT1Q9NYF0 836 aa6.61□□□□□ -1.35
LIMA1-215ENST00000552823 CHD2O14647 1828 aaKnown RBP6.61□□□□□ -1.35
LIMA1-215ENST00000552823 hCG_1642624A0A1W2PR95 340 aa6.61□□□□□ -1.35
LIMA1-215ENST00000552823 E7EWF7 191 aa6.61□□□□□ -1.35
LIMA1-215ENST00000552823 SMIM22K7EJ46 135 aa6.61□□□□□ -1.35
LIMA1-215ENST00000552823 RBM10P98175 930 aaKnown RBP6.61□□□□□ -1.35
LIMA1-215ENST00000552823 SCRN1Q12765 414 aa6.61□□□□□ -1.35
LIMA1-215ENST00000552823 GNL2Q13823 731 aaKnown RBP6.61□□□□□ -1.35
LIMA1-215ENST00000552823 SLC51AQ86UW1 340 aa6.61□□□□□ -1.35
LIMA1-215ENST00000552823 NLRP10Q86W26 655 aa6.61□□□□□ -1.35
LIMA1-215ENST00000552823 ZSCAN31Q96LW9 406 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-215ENST00000552823 AIFM3Q96NN9 605 aa6.61□□□□□ -1.35
LIMA1-215ENST00000552823 RPAP1Q9BWH6 1393 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-215ENST00000552823 MED1Q15648 1581 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-215ENST00000552823 MAST3O60307 1309 aa6.6□□□□□ -1.35
LIMA1-215ENST00000552823 KLF18A0A0U1RQI7 1052 aa6.6□□□□□ -1.35
LIMA1-215ENST00000552823 UBE2Q2LH0YL09 131 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms