RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 UBASH3AP57075 661 aa15.05■□□□□ 0
MSH6-210ENST00000540021 TAF3Q5VWG9 929 aa15.05■□□□□ 0
MSH6-210ENST00000540021 MAP4K1Q92918 833 aa15.05■□□□□ 0
MSH6-210ENST00000540021 TIGD1Q96MW7 591 aa15.05■□□□□ 0
MSH6-210ENST00000540021 TTC21AQ8NDW8 1320 aa15.05■□□□□ -0
MSH6-210ENST00000540021 RXRAP19793 462 aa15.05■□□□□ -0
MSH6-210ENST00000540021 KLF18A0A0U1RQI7 1052 aa15.05■□□□□ -0
MSH6-210ENST00000540021 TIMM10P62072 90 aa15.05■□□□□ -0
MSH6-210ENST00000540021 FAM160A1Q05DH4 1040 aa15.05■□□□□ -0
MSH6-210ENST00000540021 NECTIN1Q15223 517 aa15.05■□□□□ -0
MSH6-210ENST00000540021 LRRFIP1Q32MZ4 808 aaKnown RBP15.05■□□□□ -0
MSH6-210ENST00000540021 NBPF6Q5VWK0 638 aa15.05■□□□□ -0
MSH6-210ENST00000540021 ERO1AQ96HE7 468 aa15.05■□□□□ -0
MSH6-210ENST00000540021 NBPF4Q96M43 638 aa15.05■□□□□ -0
MSH6-210ENST00000540021 UTP14AQ9BVJ6 771 aaKnown RBP15.05■□□□□ -0
MSH6-210ENST00000540021 TAF6LQ9Y6J9 622 aa15.05■□□□□ -0
MSH6-210ENST00000540021 CCP110O43303 1012 aa15.04■□□□□ -0
MSH6-210ENST00000540021 PGBD1Q96JS3 809 aa15.04■□□□□ -0
MSH6-210ENST00000540021 ZC3H13Q5T200 1668 aaKnown RBP15.04■□□□□ -0
MSH6-210ENST00000540021 HMGB1P09429 215 aaKnown RBP15.04■□□□□ -0
MSH6-210ENST00000540021 SAFBQ15424 915 aaKnown RBP eCLIP15.04■□□□□ -0
MSH6-210ENST00000540021 LMBR1LQ6UX01 489 aa15.04■□□□□ -0
MSH6-210ENST00000540021 XPO4Q9C0E2 1151 aaKnown RBP15.04■□□□□ -0
MSH6-210ENST00000540021 CALCOCO1Q9P1Z2 691 aa15.04■□□□□ -0
MSH6-210ENST00000540021 PHF8Q9UPP1 1060 aa15.04■□□□□ -0
MSH6-210ENST00000540021 CD163L1Q9NR16 1453 aa15.04■□□□□ -0
MSH6-210ENST00000540021 EPB41L2O43491 1005 aaKnown RBP15.03■□□□□ -0
MSH6-210ENST00000540021 IMMTQ16891 758 aaKnown RBP15.03■□□□□ -0
MSH6-210ENST00000540021 DHX32Q7L7V1 743 aaKnown RBP15.03■□□□□ -0
MSH6-210ENST00000540021 TDRD7Q8NHU6 1098 aaKnown RBP15.03■□□□□ -0
MSH6-210ENST00000540021 HOOK1Q9UJC3 728 aaKnown RBP15.03■□□□□ -0
MSH6-210ENST00000540021 CCDC158Q5M9N0 1113 aa15.03■□□□□ -0
MSH6-210ENST00000540021 CHGBP05060 677 aa15.03■□□□□ -0
MSH6-210ENST00000540021 TPM1P09493 284 aa15.03■□□□□ -0
MSH6-210ENST00000540021 SLFNL1Q499Z3 407 aa15.03■□□□□ -0
MSH6-210ENST00000540021 JMYQ8N9B5 988 aa15.03■□□□□ -0
MSH6-210ENST00000540021 CEP126Q9P2H0 1117 aa15.03■□□□□ -0
MSH6-210ENST00000540021 MYO3AQ8NEV4 1616 aa15.02■□□□□ -0
MSH6-210ENST00000540021 ARHGEF10O15013 1369 aa15.02■□□□□ -0
MSH6-210ENST00000540021 SPTLC2O15270 562 aa15.02■□□□□ -0
MSH6-210ENST00000540021 CBFA2T2O43439 604 aa15.02■□□□□ -0
MSH6-210ENST00000540021 AKAP17AQ02040 695 aaKnown RBP15.02■□□□□ -0
MSH6-210ENST00000540021 POLA2Q14181 598 aa15.02■□□□□ -0
MSH6-210ENST00000540021 HSP90B2PQ58FF3 399 aa15.02■□□□□ -0
MSH6-210ENST00000540021 ANKRD13DQ6ZTN6 518 aa15.02■□□□□ -0
MSH6-210ENST00000540021 MICU3Q86XE3 530 aa15.02■□□□□ -0
MSH6-210ENST00000540021 CCDC150Q8NCX0 1101 aa15.02■□□□□ -0
MSH6-210ENST00000540021 CASQ1P31415 396 aa15.02■□□□□ -0
MSH6-210ENST00000540021 INO80Q9ULG1 1556 aaPredicted RBP15.02□□□□□ -0.01
MSH6-210ENST00000540021 TULP1O00294 542 aaPredicted RBP15.02□□□□□ -0.01
MSH6-210ENST00000540021 CNNM3Q8NE01 707 aa15.02□□□□□ -0.01
MSH6-210ENST00000540021 ZBTB3Q9H5J0 574 aa15.02□□□□□ -0.01
MSH6-210ENST00000540021 IDH1O75874 414 aaKnown RBP15.01□□□□□ -0.01
MSH6-210ENST00000540021 SYKP43405 635 aa15.01□□□□□ -0.01
MSH6-210ENST00000540021 GOLGA8FQ08AF8 430 aa15.01□□□□□ -0.01
MSH6-210ENST00000540021 GOLGA8DPQ0D2H9 430 aa15.01□□□□□ -0.01
MSH6-210ENST00000540021 SCRN1Q12765 414 aa15.01□□□□□ -0.01
MSH6-210ENST00000540021 MLH3Q9UHC1 1453 aa15.01□□□□□ -0.01
MSH6-210ENST00000540021 PLEKHG3A1L390 1219 aa15.01□□□□□ -0.01
MSH6-210ENST00000540021 GABPB1Q06547 395 aaPredicted RBP15.01□□□□□ -0.01
MSH6-210ENST00000540021 CARD6Q9BX69 1037 aa15.01□□□□□ -0.01
MSH6-210ENST00000540021 ZBTB22O15209 634 aa15.01□□□□□ -0.01
MSH6-210ENST00000540021 LMAN1P49257 510 aa15.01□□□□□ -0.01
MSH6-210ENST00000540021 KARSQ15046 597 aaKnown RBP15.01□□□□□ -0.01
MSH6-210ENST00000540021 FBXO38Q6PIJ6 1188 aa15.01□□□□□ -0.01
MSH6-210ENST00000540021 SASH1O94885 1247 aa15□□□□□ -0.01
MSH6-210ENST00000540021 RNF216Q9NWF9 866 aaPredicted RBP15□□□□□ -0.01
MSH6-210ENST00000540021 NEXMIFQ5QGS0 1516 aa15□□□□□ -0.01
MSH6-210ENST00000540021 ZSCAN12O43309 604 aa15□□□□□ -0.01
MSH6-210ENST00000540021 TAF5LO75529 589 aa15□□□□□ -0.01
MSH6-210ENST00000540021 AKAP4Q5JQC9 854 aa15□□□□□ -0.01
MSH6-210ENST00000540021 NUP133Q8WUM0 1156 aa15□□□□□ -0.01
MSH6-210ENST00000540021 CCDC102AQ96A19 550 aa15□□□□□ -0.01
MSH6-210ENST00000540021 ST7Q9NRC1 585 aa15□□□□□ -0.01
MSH6-210ENST00000540021 ELP1O95163 1332 aa15□□□□□ -0.01
MSH6-210ENST00000540021 ROBO2Q9HCK4 1378 aa15□□□□□ -0.01
MSH6-210ENST00000540021 TOB2Q14106 344 aaPredicted RBP15□□□□□ -0.01
MSH6-210ENST00000540021 MCM6Q14566 821 aa15□□□□□ -0.01
MSH6-210ENST00000540021 IGSF1Q8N6C5 1336 aa15□□□□□ -0.01
MSH6-210ENST00000540021 CRB1P82279 1406 aa15□□□□□ -0.01
MSH6-210ENST00000540021 MAP2P11137 1827 aaKnown RBP15□□□□□ -0.01
MSH6-210ENST00000540021 CYP21A2P08686 494 aa14.99□□□□□ -0.01
MSH6-210ENST00000540021 CCDC57Q2TAC2 916 aa14.99□□□□□ -0.01
MSH6-210ENST00000540021 AMOTQ4VCS5 1084 aa14.99□□□□□ -0.01
MSH6-210ENST00000540021 TNNI3KQ59H18 835 aa14.99□□□□□ -0.01
MSH6-210ENST00000540021 PPFIBP1Q86W92 1011 aa14.99□□□□□ -0.01
MSH6-210ENST00000540021 NFATC2IPQ8NCF5 419 aa14.99□□□□□ -0.01
MSH6-210ENST00000540021 CCDC12Q8WUD4 166 aaPredicted RBP14.99□□□□□ -0.01
MSH6-210ENST00000540021 FPGT-TNNI3KV9GXZ4 949 aa14.99□□□□□ -0.01
MSH6-210ENST00000540021 SALL3Q9BXA9 1300 aa14.99□□□□□ -0.01
MSH6-210ENST00000540021 CPS1P31327 1500 aa14.99□□□□□ -0.01
MSH6-210ENST00000540021 TATP17735 454 aaPredicted RBP14.99□□□□□ -0.01
MSH6-210ENST00000540021 CABP4P57796 275 aa14.99□□□□□ -0.01
MSH6-210ENST00000540021 PAG1Q9NWQ8 432 aa14.99□□□□□ -0.01
MSH6-210ENST00000540021 CTNNA3Q9UI47 895 aa14.99□□□□□ -0.01
MSH6-210ENST00000540021 SPECC1Q5M775 1068 aa14.99□□□□□ -0.01
MSH6-210ENST00000540021 ANKRD24Q8TF21 1146 aa14.99□□□□□ -0.01
MSH6-210ENST00000540021 AK7Q96M32 723 aa14.99□□□□□ -0.01
MSH6-210ENST00000540021 ZNF213O14771 459 aa14.98□□□□□ -0.01
MSH6-210ENST00000540021 LTKP29376 864 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms