RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 MAP2K1Q02750 393 aaPredicted RBP10.91□□□□□ -0.66
USP28-203ENST00000537490 GRM1Q13255 1194 aa10.91□□□□□ -0.66
USP28-203ENST00000537490 DLK2Q6UY11 383 aa10.91□□□□□ -0.66
USP28-203ENST00000537490 SAMD7Q7Z3H4 446 aa10.91□□□□□ -0.66
USP28-203ENST00000537490 DPF2Q92785 391 aa10.91□□□□□ -0.66
USP28-203ENST00000537490 EYA3Q99504 573 aa10.91□□□□□ -0.66
USP28-203ENST00000537490 CWC25Q9NXE8 425 aaPredicted RBP10.91□□□□□ -0.66
USP28-203ENST00000537490 MAP3K2Q9Y2U5 619 aa10.91□□□□□ -0.66
USP28-203ENST00000537490 RTL9Q8NET4 1388 aa10.9□□□□□ -0.66
USP28-203ENST00000537490 PI4KAP2A4QPH2 592 aa10.9□□□□□ -0.66
USP28-203ENST00000537490 EGFRP00533 1210 aa10.9□□□□□ -0.66
USP28-203ENST00000537490 IGKV5-2P06315 115 aa10.9□□□□□ -0.66
USP28-203ENST00000537490 HSP90B1P14625 803 aaKnown RBP10.9□□□□□ -0.66
USP28-203ENST00000537490 ECE1P42892 770 aa10.9□□□□□ -0.66
USP28-203ENST00000537490 CCDC152Q4G0S7 254 aa10.9□□□□□ -0.66
USP28-203ENST00000537490 KSR2Q6VAB6 950 aa10.9□□□□□ -0.66
USP28-203ENST00000537490 CDC37L1Q7L3B6 337 aa10.9□□□□□ -0.66
USP28-203ENST00000537490 SAPCD2Q86UD0 394 aa10.9□□□□□ -0.66
USP28-203ENST00000537490 USP48Q86UV5 1035 aa10.9□□□□□ -0.66
USP28-203ENST00000537490 WWC1Q8IX03 1113 aa10.9□□□□□ -0.66
USP28-203ENST00000537490 PI4KAP1Q8N8J0 262 aa10.9□□□□□ -0.66
USP28-203ENST00000537490 ZC3H12CQ9C0D7 883 aaKnown RBP10.9□□□□□ -0.66
USP28-203ENST00000537490 PODXL2Q9NZ53 605 aa10.9□□□□□ -0.66
USP28-203ENST00000537490 LRRC37AA6NMS7 1700 aa10.89□□□□□ -0.67
USP28-203ENST00000537490 AOC2O75106 756 aa10.89□□□□□ -0.67
USP28-203ENST00000537490 UFL1O94874 794 aa10.89□□□□□ -0.67
USP28-203ENST00000537490 CCDC27Q2M243 656 aa10.89□□□□□ -0.67
USP28-203ENST00000537490 TBC1D10BQ4KMP7 808 aaPredicted RBP10.89□□□□□ -0.67
USP28-203ENST00000537490 RBM26Q5T8P6 1007 aaKnown RBP10.89□□□□□ -0.67
USP28-203ENST00000537490 G2E3Q7L622 706 aa10.89□□□□□ -0.67
USP28-203ENST00000537490 CHMP4AQ9BY43 222 aa10.89□□□□□ -0.67
USP28-203ENST00000537490 ZNF408Q9H9D4 720 aa10.89□□□□□ -0.67
USP28-203ENST00000537490 ANKIB1Q9P2G1 1089 aa10.89□□□□□ -0.67
USP28-203ENST00000537490 WTIPA6NIX2 430 aaPredicted RBP10.88□□□□□ -0.67
USP28-203ENST00000537490 VIL1P09327 827 aaKnown RBP10.88□□□□□ -0.67
USP28-203ENST00000537490 RPS12P25398 132 aaKnown RBP10.88□□□□□ -0.67
USP28-203ENST00000537490 CWF19L2Q2TBE0 894 aaKnown RBP10.88□□□□□ -0.67
USP28-203ENST00000537490 TWISTNBQ3B726 338 aaPredicted RBP10.88□□□□□ -0.67
USP28-203ENST00000537490 ANKRD18AQ8IVF6 992 aa10.88□□□□□ -0.67
USP28-203ENST00000537490 GGA1Q9UJY5 639 aa10.88□□□□□ -0.67
USP28-203ENST00000537490 G3V3G9 751 aa10.87□□□□□ -0.67
USP28-203ENST00000537490 SLC4A2P04920 1241 aa10.87□□□□□ -0.67
USP28-203ENST00000537490 MAP2K2P36507 400 aa10.87□□□□□ -0.67
USP28-203ENST00000537490 CTSWP56202 376 aa10.87□□□□□ -0.67
USP28-203ENST00000537490 DCAF8Q5TAQ9 597 aa10.87□□□□□ -0.67
USP28-203ENST00000537490 TTLL11Q8NHH1 800 aa10.87□□□□□ -0.67
USP28-203ENST00000537490 STK31Q9BXU1 1019 aa10.87□□□□□ -0.67
USP28-203ENST00000537490 PCNTO95613 3336 aa10.86□□□□□ -0.67
USP28-203ENST00000537490 NEURL1BA8MQ27 555 aa10.86□□□□□ -0.67
USP28-203ENST00000537490 ADM5C9JUS6 153 aa10.86□□□□□ -0.67
USP28-203ENST00000537490 H7C1W4 665 aa10.86□□□□□ -0.67
USP28-203ENST00000537490 ATP2B4P23634 1241 aa10.86□□□□□ -0.67
USP28-203ENST00000537490 NEXNQ0ZGT2 675 aa10.86□□□□□ -0.67
USP28-203ENST00000537490 KRT26Q7Z3Y9 468 aa10.86□□□□□ -0.67
USP28-203ENST00000537490 HHIPL1Q96JK4 782 aa10.86□□□□□ -0.67
USP28-203ENST00000537490 GREM2Q9H772 168 aa10.86□□□□□ -0.67
USP28-203ENST00000537490 TSKSQ9UJT2 592 aa10.86□□□□□ -0.67
USP28-203ENST00000537490 SALL2Q9Y467 1007 aaPredicted RBP10.86□□□□□ -0.67
USP28-203ENST00000537490 ASTN2O75129 1339 aaPredicted RBP10.85□□□□□ -0.67
USP28-203ENST00000537490 XDHP47989 1333 aa10.85□□□□□ -0.67
USP28-203ENST00000537490 IL16Q14005 1332 aa10.85□□□□□ -0.67
USP28-203ENST00000537490 KIF4BQ2VIQ3 1234 aa10.85□□□□□ -0.67
USP28-203ENST00000537490 RSBN1LQ6PCB5 846 aaPredicted RBP10.85□□□□□ -0.67
USP28-203ENST00000537490 DCPSQ96C86 337 aaKnown RBP10.85□□□□□ -0.67
USP28-203ENST00000537490 ZIC5Q96T25 663 aa10.85□□□□□ -0.67
USP28-203ENST00000537490 CDC5LQ99459 802 aaKnown RBP10.85□□□□□ -0.67
USP28-203ENST00000537490 BEGAINQ9BUH8 593 aa10.85□□□□□ -0.67
USP28-203ENST00000537490 MRS2Q9HD23 443 aa10.85□□□□□ -0.67
USP28-203ENST00000537490 BSDC1Q9NW68 430 aaPredicted RBP10.85□□□□□ -0.67
USP28-203ENST00000537490 MINPP1Q9UNW1 487 aa10.85□□□□□ -0.67
USP28-203ENST00000537490 TRPM7Q96QT4 1865 aa10.85□□□□□ -0.67
USP28-203ENST00000537490 VAMP4O75379 141 aa10.84□□□□□ -0.67
USP28-203ENST00000537490 HUNKP57058 714 aa10.84□□□□□ -0.67
USP28-203ENST00000537490 ZNF280AP59817 542 aaPredicted RBP10.84□□□□□ -0.67
USP28-203ENST00000537490 FLIIQ13045 1269 aa10.84□□□□□ -0.67
USP28-203ENST00000537490 UBE3BQ7Z3V4 1068 aa10.84□□□□□ -0.67
USP28-203ENST00000537490 AGBL3Q8NEM8 1001 aa10.84□□□□□ -0.67
USP28-203ENST00000537490 GMLQ99445 158 aa10.84□□□□□ -0.67
USP28-203ENST00000537490 GBA2Q9HCG7 927 aaPredicted RBP10.84□□□□□ -0.67
USP28-203ENST00000537490 FANCIQ9NVI1 1328 aa10.84□□□□□ -0.67
USP28-203ENST00000537490 CASP7P55210 303 aa10.83□□□□□ -0.68
USP28-203ENST00000537490 SCARF1Q14162 830 aa10.83□□□□□ -0.68
USP28-203ENST00000537490 GCKRQ14397 625 aa10.83□□□□□ -0.68
USP28-203ENST00000537490 PODNQ7Z5L7 613 aa10.83□□□□□ -0.68
USP28-203ENST00000537490 DNAAF4Q8WXU2 420 aa10.83□□□□□ -0.68
USP28-203ENST00000537490 GGA3Q9NZ52 723 aa10.83□□□□□ -0.68
USP28-203ENST00000537490 THSD7BQ9C0I4 1608 aa10.83□□□□□ -0.68
USP28-203ENST00000537490 SCN9AQ15858 1988 aa10.83□□□□□ -0.68
USP28-203ENST00000537490 USP17L3A6NCW0 530 aa10.82□□□□□ -0.68
USP28-203ENST00000537490 USP17L4A6NCW7 530 aa10.82□□□□□ -0.68
USP28-203ENST00000537490 ANP32CO43423 234 aa10.82□□□□□ -0.68
USP28-203ENST00000537490 CSF1RP07333 972 aa10.82□□□□□ -0.68
USP28-203ENST00000537490 USP17L8P0C7I0 530 aa10.82□□□□□ -0.68
USP28-203ENST00000537490 CCT4P50991 539 aaKnown RBP10.82□□□□□ -0.68
USP28-203ENST00000537490 BRPF1P55201 1214 aaPredicted RBP10.82□□□□□ -0.68
USP28-203ENST00000537490 EXOSC9Q06265 439 aaKnown RBP10.82□□□□□ -0.68
USP28-203ENST00000537490 FKBP5Q13451 457 aaPredicted RBP10.82□□□□□ -0.68
USP28-203ENST00000537490 ANGEL2Q5VTE6 544 aaKnown RBP10.82□□□□□ -0.68
USP28-203ENST00000537490 RGMBQ6NW40 437 aa10.82□□□□□ -0.68
USP28-203ENST00000537490 USP17L1Q7RTZ2 530 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms