RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 ANKRD33BA6NCL7 494 aa7.22□□□□□ -1.25
CD44-236ENST00000533222 PDE12Q6L8Q7 609 aaKnown RBP7.22□□□□□ -1.25
CD44-236ENST00000533222 DHX32Q7L7V1 743 aaKnown RBP7.22□□□□□ -1.25
CD44-236ENST00000533222 TRIM44Q96DX7 344 aaPredicted RBP7.22□□□□□ -1.25
CD44-236ENST00000533222 NSUN5Q96P11 429 aaKnown RBP7.22□□□□□ -1.25
CD44-236ENST00000533222 SETDB2Q96T68 719 aa7.22□□□□□ -1.25
CD44-236ENST00000533222 ABI2Q9NYB9 513 aaPredicted RBP7.22□□□□□ -1.25
CD44-236ENST00000533222 FNDC3AQ9Y2H6 1198 aaKnown RBP7.22□□□□□ -1.25
CD44-236ENST00000533222 ZBTB42B2RXF5 422 aa7.21□□□□□ -1.26
CD44-236ENST00000533222 TREHO43280 583 aa7.21□□□□□ -1.26
CD44-236ENST00000533222 POLR3DP05423 398 aaPredicted RBP7.21□□□□□ -1.26
CD44-236ENST00000533222 SLURP2P0DP57 97 aa7.21□□□□□ -1.26
CD44-236ENST00000533222 ADH6P28332 368 aa7.21□□□□□ -1.26
CD44-236ENST00000533222 DSC3Q14574 896 aa7.21□□□□□ -1.26
CD44-236ENST00000533222 LYPD4Q6UWN0 246 aa7.21□□□□□ -1.26
CD44-236ENST00000533222 XKR5Q6UX68 686 aa7.21□□□□□ -1.26
CD44-236ENST00000533222 NPAS4Q8IUM7 802 aa7.21□□□□□ -1.26
CD44-236ENST00000533222 TTC16Q8NEE8 873 aa7.21□□□□□ -1.26
CD44-236ENST00000533222 MDFIQ99750 246 aa7.21□□□□□ -1.26
CD44-236ENST00000533222 UBE2OQ9C0C9 1292 aaKnown RBP7.21□□□□□ -1.26
CD44-236ENST00000533222 DNAJB12Q9NXW2 375 aaKnown RBP7.21□□□□□ -1.26
CD44-236ENST00000533222 NAGPAQ9UK23 515 aa7.21□□□□□ -1.26
CD44-236ENST00000533222 NSFL1CQ9UNZ2 370 aaKnown RBP7.21□□□□□ -1.26
CD44-236ENST00000533222 EREGO14944 169 aa7.2□□□□□ -1.26
CD44-236ENST00000533222 SIN3BO75182 1162 aa7.2□□□□□ -1.26
CD44-236ENST00000533222 MAP3K6O95382 1288 aa7.2□□□□□ -1.26
CD44-236ENST00000533222 RPLP1P05386 114 aaKnown RBP7.2□□□□□ -1.26
CD44-236ENST00000533222 P4HBP07237 508 aaKnown RBP7.2□□□□□ -1.26
CD44-236ENST00000533222 ACPPP15309 386 aa7.2□□□□□ -1.26
CD44-236ENST00000533222 LORP23490 312 aaPredicted RBP7.2□□□□□ -1.26
CD44-236ENST00000533222 EHHADHQ08426 723 aa7.2□□□□□ -1.26
CD44-236ENST00000533222 PDE3BQ13370 1112 aa7.2□□□□□ -1.26
CD44-236ENST00000533222 SLCO4C1Q6ZQN7 724 aa7.2□□□□□ -1.26
CD44-236ENST00000533222 HFE2Q6ZVN8 426 aa7.2□□□□□ -1.26
CD44-236ENST00000533222 OR13H1Q8NG92 308 aa7.2□□□□□ -1.26
CD44-236ENST00000533222 SNX29Q8TEQ0 813 aa7.2□□□□□ -1.26
CD44-236ENST00000533222 ZNF622Q969S3 477 aaKnown RBP eCLIP7.2□□□□□ -1.26
CD44-236ENST00000533222 DMRTB1Q96MA1 342 aa7.2□□□□□ -1.26
CD44-236ENST00000533222 CITED4Q96RK1 184 aa7.2□□□□□ -1.26
CD44-236ENST00000533222 POLR3GLQ9BT43 218 aa7.2□□□□□ -1.26
CD44-236ENST00000533222 PDCL3Q9H2J4 239 aa7.2□□□□□ -1.26
CD44-236ENST00000533222 C11orf16Q9NQ32 467 aa7.2□□□□□ -1.26
CD44-236ENST00000533222 TLR7Q9NYK1 1049 aaKnown RBP7.2□□□□□ -1.26
CD44-236ENST00000533222 SHISA8B8ZZ34 492 aa7.19□□□□□ -1.26
CD44-236ENST00000533222 PHACTR2O75167 634 aa7.19□□□□□ -1.26
CD44-236ENST00000533222 ADH7P40394 386 aa7.19□□□□□ -1.26
CD44-236ENST00000533222 FMR1Q06787 632 aaKnown RBP eCLIP7.19□□□□□ -1.26
CD44-236ENST00000533222 TAF3Q5VWG9 929 aa7.19□□□□□ -1.26
CD44-236ENST00000533222 ZNF385CQ66K41 422 aaPredicted RBP7.19□□□□□ -1.26
CD44-236ENST00000533222 ZSCAN29Q8IWY8 852 aaPredicted RBP7.19□□□□□ -1.26
CD44-236ENST00000533222 CEP120Q8N960 986 aa7.19□□□□□ -1.26
CD44-236ENST00000533222 TNFRSF25Q93038 417 aa7.19□□□□□ -1.26
CD44-236ENST00000533222 ALKBH8Q96BT7 664 aaKnown RBP7.19□□□□□ -1.26
CD44-236ENST00000533222 AVENQ9NQS1 362 aaPredicted RBP7.19□□□□□ -1.26
CD44-236ENST00000533222 SLC6A14Q9UN76 642 aa7.19□□□□□ -1.26
CD44-236ENST00000533222 NOP58Q9Y2X3 529 aaKnown RBP7.19□□□□□ -1.26
CD44-236ENST00000533222 J3QW42 95 aa7.18□□□□□ -1.26
CD44-236ENST00000533222 WIPF1O43516 503 aa7.18□□□□□ -1.26
CD44-236ENST00000533222 PSAPP07602 524 aa7.18□□□□□ -1.26
CD44-236ENST00000533222 CELA2BP08218 269 aaPredicted RBP7.18□□□□□ -1.26
CD44-236ENST00000533222 MAPK8P45983 427 aa7.18□□□□□ -1.26
CD44-236ENST00000533222 TAGLNQ01995 201 aaKnown RBP7.18□□□□□ -1.26
CD44-236ENST00000533222 TTC39BQ5VTQ0 682 aaPredicted RBP7.18□□□□□ -1.26
CD44-236ENST00000533222 GOLGA6L1Q8N7Z2 621 aa7.18□□□□□ -1.26
CD44-236ENST00000533222 MAP7D2Q96T17 732 aa7.18□□□□□ -1.26
CD44-236ENST00000533222 LATS2Q9NRM7 1088 aa7.18□□□□□ -1.26
CD44-236ENST00000533222 EIF1AYO14602 144 aaKnown RBP7.17□□□□□ -1.26
CD44-236ENST00000533222 EPXP11678 715 aa7.17□□□□□ -1.26
CD44-236ENST00000533222 CPB1P15086 417 aa7.17□□□□□ -1.26
CD44-236ENST00000533222 GPLD1P80108 840 aa7.17□□□□□ -1.26
CD44-236ENST00000533222 PLAURQ03405 335 aa7.17□□□□□ -1.26
CD44-236ENST00000533222 UTP14CQ5TAP6 766 aaKnown RBP7.17□□□□□ -1.26
CD44-236ENST00000533222 TRPM4Q8TD43 1214 aa7.17□□□□□ -1.26
CD44-236ENST00000533222 PSMD1Q99460 953 aa7.17□□□□□ -1.26
CD44-236ENST00000533222 PLCD4Q9BRC7 762 aa7.17□□□□□ -1.26
CD44-236ENST00000533222 ZFYVE28Q9HCC9 887 aa7.17□□□□□ -1.26
CD44-236ENST00000533222 RNF19AQ9NV58 838 aa7.17□□□□□ -1.26
CD44-236ENST00000533222 GDF2Q9UK05 429 aaPredicted RBP7.17□□□□□ -1.26
CD44-236ENST00000533222 WWC3Q9ULE0 1092 aa7.17□□□□□ -1.26
CD44-236ENST00000533222 ELOA3CA0A087WX78 387 aaPredicted RBP7.16□□□□□ -1.26
CD44-236ENST00000533222 PNMA6FA0A0J9YX94 578 aa7.16□□□□□ -1.26
CD44-236ENST00000533222 ELOA3DA6NLF2 546 aaPredicted RBP7.16□□□□□ -1.26
CD44-236ENST00000533222 ADARB2-AS1A8MUL3 147 aa7.16□□□□□ -1.26
CD44-236ENST00000533222 OIP5O43482 229 aa7.16□□□□□ -1.26
CD44-236ENST00000533222 TRPA1O75762 1119 aa7.16□□□□□ -1.26
CD44-236ENST00000533222 BCRP11274 1271 aa7.16□□□□□ -1.26
CD44-236ENST00000533222 CES1P23141 567 aa7.16□□□□□ -1.26
CD44-236ENST00000533222 IRS1P35568 1242 aa7.16□□□□□ -1.26
CD44-236ENST00000533222 SOX18P35713 384 aa7.16□□□□□ -1.26
CD44-236ENST00000533222 NRLP54845 237 aa7.16□□□□□ -1.26
CD44-236ENST00000533222 ELOA3BQ3SY89 546 aa7.16□□□□□ -1.26
CD44-236ENST00000533222 PI16Q6UXB8 463 aa7.16□□□□□ -1.26
CD44-236ENST00000533222 GALNT6Q8NCL4 622 aa7.16□□□□□ -1.26
CD44-236ENST00000533222 ELOA3Q8NG57 546 aa7.16□□□□□ -1.26
CD44-236ENST00000533222 EDARADDQ8WWZ3 215 aa7.16□□□□□ -1.26
CD44-236ENST00000533222 CSRNP1Q96S65 589 aa7.16□□□□□ -1.26
CD44-236ENST00000533222 EFCC1Q9HA90 598 aa7.16□□□□□ -1.26
CD44-236ENST00000533222 STARD13Q9Y3M8 1113 aa7.16□□□□□ -1.26
CD44-236ENST00000533222 LAS1LQ9Y4W2 734 aaKnown RBP7.16□□□□□ -1.26
CD44-236ENST00000533222 PHF20L1A8MW92 1017 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms