RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 TSPYL6Q8N831 410 aa14.65□□□□□ -0.06
VPS28-214ENST00000531032 HHIPL1Q96JK4 782 aa14.65□□□□□ -0.06
VPS28-214ENST00000531032 GPR101Q96P66 508 aaPredicted RBP14.65□□□□□ -0.06
VPS28-214ENST00000531032 SEC31BQ9NQW1 1179 aa14.65□□□□□ -0.06
VPS28-214ENST00000531032 CWC25Q9NXE8 425 aaPredicted RBP14.65□□□□□ -0.06
VPS28-214ENST00000531032 SCN9AQ15858 1988 aa14.65□□□□□ -0.06
VPS28-214ENST00000531032 MAP2K2P36507 400 aa14.63□□□□□ -0.07
VPS28-214ENST00000531032 GRM1Q13255 1194 aa14.63□□□□□ -0.07
VPS28-214ENST00000531032 DOK7Q18PE1 504 aa14.63□□□□□ -0.07
VPS28-214ENST00000531032 CCDC27Q2M243 656 aa14.63□□□□□ -0.07
VPS28-214ENST00000531032 SAMD7Q7Z3H4 446 aa14.63□□□□□ -0.07
VPS28-214ENST00000531032 ZC3H12CQ9C0D7 883 aaKnown RBP14.63□□□□□ -0.07
VPS28-214ENST00000531032 KCNQ5Q9NR82 932 aa14.63□□□□□ -0.07
VPS28-214ENST00000531032 MAP3K2Q9Y2U5 619 aa14.63□□□□□ -0.07
VPS28-214ENST00000531032 ZNF609O15014 1411 aa14.63□□□□□ -0.07
VPS28-214ENST00000531032 PSME4Q14997 1843 aa14.62□□□□□ -0.07
VPS28-214ENST00000531032 UFL1O94874 794 aa14.62□□□□□ -0.07
VPS28-214ENST00000531032 EGFRP00533 1210 aa14.62□□□□□ -0.07
VPS28-214ENST00000531032 VIL1P09327 827 aaKnown RBP14.62□□□□□ -0.07
VPS28-214ENST00000531032 ZEB1P37275 1124 aaPredicted RBP14.62□□□□□ -0.07
VPS28-214ENST00000531032 CCDC184Q52MB2 194 aa14.62□□□□□ -0.07
VPS28-214ENST00000531032 KSR2Q6VAB6 950 aa14.62□□□□□ -0.07
VPS28-214ENST00000531032 JARID2Q92833 1246 aaPredicted RBP14.62□□□□□ -0.07
VPS28-214ENST00000531032 TSR2Q969E8 191 aaKnown RBP14.62□□□□□ -0.07
VPS28-214ENST00000531032 ANKIB1Q9P2G1 1089 aa14.62□□□□□ -0.07
VPS28-214ENST00000531032 GGA1Q9UJY5 639 aa14.62□□□□□ -0.07
VPS28-214ENST00000531032 MYH3P11055 1940 aa14.61□□□□□ -0.07
VPS28-214ENST00000531032 PI4KAP2A4QPH2 592 aa14.61□□□□□ -0.07
VPS28-214ENST00000531032 AOC2O75106 756 aa14.61□□□□□ -0.07
VPS28-214ENST00000531032 IGKV5-2P06315 115 aa14.61□□□□□ -0.07
VPS28-214ENST00000531032 TBC1D10BQ4KMP7 808 aaPredicted RBP14.61□□□□□ -0.07
VPS28-214ENST00000531032 WWC1Q8IX03 1113 aa14.61□□□□□ -0.07
VPS28-214ENST00000531032 PI4KAP1Q8N8J0 262 aa14.61□□□□□ -0.07
VPS28-214ENST00000531032 BEGAINQ9BUH8 593 aa14.61□□□□□ -0.07
VPS28-214ENST00000531032 ZNF408Q9H9D4 720 aa14.61□□□□□ -0.07
VPS28-214ENST00000531032 CTSWP56202 376 aa14.6□□□□□ -0.07
VPS28-214ENST00000531032 KRT26Q7Z3Y9 468 aa14.6□□□□□ -0.07
VPS28-214ENST00000531032 USP48Q86UV5 1035 aa14.6□□□□□ -0.07
VPS28-214ENST00000531032 ANKRD18AQ8IVF6 992 aa14.6□□□□□ -0.07
VPS28-214ENST00000531032 CCDC85AQ96PX6 553 aaPredicted RBP14.6□□□□□ -0.07
VPS28-214ENST00000531032 STK31Q9BXU1 1019 aa14.6□□□□□ -0.07
VPS28-214ENST00000531032 XDHP47989 1333 aa14.6□□□□□ -0.07
VPS28-214ENST00000531032 BRPF1P55201 1214 aaPredicted RBP14.59□□□□□ -0.07
VPS28-214ENST00000531032 KIF4BQ2VIQ3 1234 aa14.59□□□□□ -0.07
VPS28-214ENST00000531032 NCBP3Q53F19 620 aaKnown RBP14.59□□□□□ -0.07
VPS28-214ENST00000531032 CDC5LQ99459 802 aaKnown RBP14.59□□□□□ -0.07
VPS28-214ENST00000531032 POLR2AP24928 1970 aaKnown RBP14.59□□□□□ -0.07
VPS28-214ENST00000531032 IL16Q14005 1332 aa14.59□□□□□ -0.07
VPS28-214ENST00000531032 SPEF2Q9C093 1822 aa14.58□□□□□ -0.08
VPS28-214ENST00000531032 NEURL1BA8MQ27 555 aa14.58□□□□□ -0.08
VPS28-214ENST00000531032 G3V3G9 751 aa14.58□□□□□ -0.08
VPS28-214ENST00000531032 CA12O43570 354 aa14.58□□□□□ -0.08
VPS28-214ENST00000531032 NEXNQ0ZGT2 675 aa14.58□□□□□ -0.08
VPS28-214ENST00000531032 CWF19L2Q2TBE0 894 aaKnown RBP14.58□□□□□ -0.08
VPS28-214ENST00000531032 TWISTNBQ3B726 338 aaPredicted RBP14.58□□□□□ -0.08
VPS28-214ENST00000531032 RBM26Q5T8P6 1007 aaKnown RBP14.58□□□□□ -0.08
VPS28-214ENST00000531032 DCAF8Q5TAQ9 597 aa14.58□□□□□ -0.08
VPS28-214ENST00000531032 DLK2Q6UY11 383 aa14.58□□□□□ -0.08
VPS28-214ENST00000531032 AGBL3Q8NEM8 1001 aa14.58□□□□□ -0.08
VPS28-214ENST00000531032 TTLL11Q8NHH1 800 aa14.58□□□□□ -0.08
VPS28-214ENST00000531032 DCPSQ96C86 337 aaKnown RBP14.58□□□□□ -0.08
VPS28-214ENST00000531032 ADM5C9JUS6 153 aa14.57□□□□□ -0.08
VPS28-214ENST00000531032 ATP2B4P23634 1241 aa14.57□□□□□ -0.08
VPS28-214ENST00000531032 HUNKP57058 714 aa14.57□□□□□ -0.08
VPS28-214ENST00000531032 ZNF280AP59817 542 aaPredicted RBP14.57□□□□□ -0.08
VPS28-214ENST00000531032 RSBN1LQ6PCB5 846 aaPredicted RBP14.57□□□□□ -0.08
VPS28-214ENST00000531032 G2E3Q7L622 706 aa14.57□□□□□ -0.08
VPS28-214ENST00000531032 GREM2Q9H772 168 aa14.57□□□□□ -0.08
VPS28-214ENST00000531032 BSDC1Q9NW68 430 aaPredicted RBP14.57□□□□□ -0.08
VPS28-214ENST00000531032 H7C1W4 665 aa14.56□□□□□ -0.08
VPS28-214ENST00000531032 SLC4A2P04920 1241 aa14.56□□□□□ -0.08
VPS28-214ENST00000531032 NOGQ13253 232 aa14.56□□□□□ -0.08
VPS28-214ENST00000531032 PODNQ7Z5L7 613 aa14.56□□□□□ -0.08
VPS28-214ENST00000531032 ABHD8Q96I13 439 aa14.56□□□□□ -0.08
VPS28-214ENST00000531032 GMLQ99445 158 aa14.56□□□□□ -0.08
VPS28-214ENST00000531032 GBA2Q9HCG7 927 aaPredicted RBP14.56□□□□□ -0.08
VPS28-214ENST00000531032 GGA3Q9NZ52 723 aa14.56□□□□□ -0.08
VPS28-214ENST00000531032 MINPP1Q9UNW1 487 aa14.56□□□□□ -0.08
VPS28-214ENST00000531032 ZNF646O15015 1829 aaPredicted RBP14.56□□□□□ -0.08
VPS28-214ENST00000531032 MED23Q9ULK4 1368 aa14.56□□□□□ -0.08
VPS28-214ENST00000531032 CACNA1FO60840 1977 aa14.55□□□□□ -0.08
VPS28-214ENST00000531032 UBE3BQ7Z3V4 1068 aa14.55□□□□□ -0.08
VPS28-214ENST00000531032 SULF1Q8IWU6 871 aa14.55□□□□□ -0.08
VPS28-214ENST00000531032 TSKSQ9UJT2 592 aa14.55□□□□□ -0.08
VPS28-214ENST00000531032 ASTN2O75129 1339 aaPredicted RBP14.55□□□□□ -0.08
VPS28-214ENST00000531032 USP17L3A6NCW0 530 aa14.54□□□□□ -0.08
VPS28-214ENST00000531032 USP17L4A6NCW7 530 aa14.54□□□□□ -0.08
VPS28-214ENST00000531032 WTIPA6NIX2 430 aaPredicted RBP14.54□□□□□ -0.08
VPS28-214ENST00000531032 FAM155AB1AL88 458 aaPredicted RBP14.54□□□□□ -0.08
VPS28-214ENST00000531032 FLIIQ13045 1269 aa14.54□□□□□ -0.08
VPS28-214ENST00000531032 RGMBQ6NW40 437 aa14.54□□□□□ -0.08
VPS28-214ENST00000531032 USP17L1Q7RTZ2 530 aa14.54□□□□□ -0.08
VPS28-214ENST00000531032 C2orf69Q8N8R5 385 aa14.54□□□□□ -0.08
VPS28-214ENST00000531032 ZIC5Q96T25 663 aa14.54□□□□□ -0.08
VPS28-214ENST00000531032 PLA2G12BQ9BX93 195 aa14.54□□□□□ -0.08
VPS28-214ENST00000531032 FANCIQ9NVI1 1328 aa14.54□□□□□ -0.08
VPS28-214ENST00000531032 USP17L8P0C7I0 530 aa14.53□□□□□ -0.08
VPS28-214ENST00000531032 CCT4P50991 539 aaKnown RBP14.53□□□□□ -0.08
VPS28-214ENST00000531032 CASP7P55210 303 aa14.53□□□□□ -0.08
VPS28-214ENST00000531032 SCARF1Q14162 830 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms