RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 CNKSR1Q969H4 720 aa25.97■■□□□ 1.75
VPS28-212ENST00000530836 GOLGB1Q14789 3259 aaKnown RBP25.96■■□□□ 1.75
VPS28-212ENST00000530836 IFIT2P09913 472 aaKnown RBP25.96■■□□□ 1.75
VPS28-212ENST00000530836 GSPT1P15170 499 aaKnown RBP25.96■■□□□ 1.75
VPS28-212ENST00000530836 IL15P40933 162 aaPredicted RBP25.96■■□□□ 1.75
VPS28-212ENST00000530836 DALRD3Q5D0E6 543 aaKnown RBP25.96■■□□□ 1.75
VPS28-212ENST00000530836 TTLL11Q8NHH1 800 aa25.96■■□□□ 1.75
VPS28-212ENST00000530836 KLHDC4Q8TBB5 520 aa25.96■■□□□ 1.75
VPS28-212ENST00000530836 RBM17Q96I25 401 aaKnown RBP25.96■■□□□ 1.75
VPS28-212ENST00000530836 TNRC6CQ9HCJ0 1690 aaKnown RBP25.95■■□□□ 1.74
VPS28-212ENST00000530836 ALDH1B1P30837 517 aa25.95■■□□□ 1.74
VPS28-212ENST00000530836 UPF2Q9HAU5 1272 aaKnown RBP25.95■■□□□ 1.74
VPS28-212ENST00000530836 EYA2O00167 538 aa25.94■■□□□ 1.74
VPS28-212ENST00000530836 GPR162Q16538 588 aa25.94■■□□□ 1.74
VPS28-212ENST00000530836 CRAMP1Q96RY5 1269 aa25.94■■□□□ 1.74
VPS28-212ENST00000530836 BCS1LQ9Y276 419 aa25.94■■□□□ 1.74
VPS28-212ENST00000530836 MYH3P11055 1940 aa25.93■■□□□ 1.74
VPS28-212ENST00000530836 ERC2O15083 957 aa25.93■■□□□ 1.74
VPS28-212ENST00000530836 CDC45O75419 566 aa25.93■■□□□ 1.74
VPS28-212ENST00000530836 GPR108Q9NPR9 543 aa25.93■■□□□ 1.74
VPS28-212ENST00000530836 ANKRD18BA2A2Z9 1011 aa25.92■■□□□ 1.74
VPS28-212ENST00000530836 YBX3P16989 372 aaKnown RBP eCLIP25.92■■□□□ 1.741e-7■□□□□ 9.8
VPS28-212ENST00000530836 TAF7LQ5H9L4 462 aa25.92■■□□□ 1.74
VPS28-212ENST00000530836 AACSQ86V21 672 aa25.92■■□□□ 1.74
VPS28-212ENST00000530836 CCDC152Q4G0S7 254 aa25.92■■□□□ 1.74
VPS28-212ENST00000530836 DDX46Q7L014 1031 aaKnown RBP25.92■■□□□ 1.74
VPS28-212ENST00000530836 SDSP20132 328 aa25.91■■□□□ 1.74
VPS28-212ENST00000530836 ITGA6P23229 1130 aa25.91■■□□□ 1.74
VPS28-212ENST00000530836 PRPF40BQ6NWY9 871 aaKnown RBP25.91■■□□□ 1.74
VPS28-212ENST00000530836 CASC1Q6TDU7 716 aa25.91■■□□□ 1.74
VPS28-212ENST00000530836 ECHDC1Q9NTX5 307 aa25.91■■□□□ 1.74
VPS28-212ENST00000530836 RTL9Q8NET4 1388 aa25.9■■□□□ 1.74
VPS28-212ENST00000530836 DCAF8L1A6NGE4 600 aa25.9■■□□□ 1.74
VPS28-212ENST00000530836 GLRX3O76003 335 aaKnown RBP25.9■■□□□ 1.74
VPS28-212ENST00000530836 ATG9AQ7Z3C6 839 aa25.9■■□□□ 1.74
VPS28-212ENST00000530836 COL11A2P13942 1736 aaPredicted RBP25.9■■□□□ 1.74
VPS28-212ENST00000530836 DDX60Q8IY21 1712 aaKnown RBP25.9■■□□□ 1.74
VPS28-212ENST00000530836 TFCP2Q12800 502 aa25.89■■□□□ 1.74
VPS28-212ENST00000530836 EAF2Q96CJ1 260 aaPredicted RBP25.89■■□□□ 1.74
VPS28-212ENST00000530836 LAMB2P55268 1798 aa25.89■■□□□ 1.73
VPS28-212ENST00000530836 TNNI3KQ59H18 835 aa25.88■■□□□ 1.73
VPS28-212ENST00000530836 CCDC85AQ96PX6 553 aaPredicted RBP25.88■■□□□ 1.73
VPS28-212ENST00000530836 GREM2Q9H772 168 aa25.88■■□□□ 1.73
VPS28-212ENST00000530836 FPGT-TNNI3KV9GXZ4 949 aa25.88■■□□□ 1.73
VPS28-212ENST00000530836 GRAPQ13588 217 aa25.88■■□□□ 1.73
VPS28-212ENST00000530836 GRAPLQ8TC17 118 aaPredicted RBP25.88■■□□□ 1.73
VPS28-212ENST00000530836 PI4K2BQ8TCG2 481 aa25.88■■□□□ 1.73
VPS28-212ENST00000530836 DLEC1Q9Y238 1755 aa25.87■■□□□ 1.73
VPS28-212ENST00000530836 GRIN3BO60391 1043 aa25.87■■□□□ 1.73
VPS28-212ENST00000530836 BBOX1O75936 387 aa25.87■■□□□ 1.73
VPS28-212ENST00000530836 ANP32AP39687 249 aaKnown RBP25.87■■□□□ 1.73
VPS28-212ENST00000530836 C7orf43Q8WVR3 580 aa25.87■■□□□ 1.73
VPS28-212ENST00000530836 CEP126Q9P2H0 1117 aa25.87■■□□□ 1.73
VPS28-212ENST00000530836 TBC1D9Q6ZT07 1266 aa25.86■■□□□ 1.73
VPS28-212ENST00000530836 ZNF594Q96JF6 807 aaPredicted RBP25.86■■□□□ 1.73
VPS28-212ENST00000530836 SEC31BQ9NQW1 1179 aa25.86■■□□□ 1.73
VPS28-212ENST00000530836 AKAP2Q9Y2D5 859 aa25.86■■□□□ 1.73
VPS28-212ENST00000530836 BRCA1P38398 1863 aaKnown RBP25.86■■□□□ 1.73
VPS28-212ENST00000530836 C21orf2O43822 256 aa25.85■■□□□ 1.73
VPS28-212ENST00000530836 LRRC24Q50LG9 513 aa25.85■■□□□ 1.73
VPS28-212ENST00000530836 TSHZ3Q63HK5 1081 aa25.85■■□□□ 1.73
VPS28-212ENST00000530836 LDHAL6AQ6ZMR3 332 aa25.85■■□□□ 1.73
VPS28-212ENST00000530836 CELF1Q92879 486 aaKnown RBP25.85■■□□□ 1.73
VPS28-212ENST00000530836 UTRNP46939 3433 aa25.84■■□□□ 1.73
VPS28-212ENST00000530836 SEC24BO95487 1268 aa25.84■■□□□ 1.73
VPS28-212ENST00000530836 ZNF219Q9P2Y4 722 aaPredicted RBP25.84■■□□□ 1.73
VPS28-212ENST00000530836 TRIM6-TRIM34B2RNG4 842 aa25.83■■□□□ 1.73
VPS28-212ENST00000530836 PPEF1O14829 653 aaPredicted RBP25.83■■□□□ 1.73
VPS28-212ENST00000530836 RPS8P62241 208 aaKnown RBP25.83■■□□□ 1.73
VPS28-212ENST00000530836 CNTROBQ8N137 903 aa25.83■■□□□ 1.73
VPS28-212ENST00000530836 CCDC8Q9H0W5 538 aaPredicted RBP25.83■■□□□ 1.73
VPS28-212ENST00000530836 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.83■■□□□ 1.73
VPS28-212ENST00000530836 PUS3Q9BZE2 481 aaKnown RBP25.82■■□□□ 1.72
VPS28-212ENST00000530836 RIPOR2Q9Y4F9 1068 aa25.82■■□□□ 1.72
VPS28-212ENST00000530836 SOGA3Q5TF21 947 aa25.81■■□□□ 1.72
VPS28-212ENST00000530836 TMC4Q7Z404 712 aa25.81■■□□□ 1.72
VPS28-212ENST00000530836 CDC5LQ99459 802 aaKnown RBP25.81■■□□□ 1.72
VPS28-212ENST00000530836 CNNM1Q9NRU3 951 aa25.81■■□□□ 1.72
VPS28-212ENST00000530836 ATP6V0A2Q9Y487 856 aa25.81■■□□□ 1.72
VPS28-212ENST00000530836 SLX4Q8IY92 1834 aa25.8■■□□□ 1.72
VPS28-212ENST00000530836 CC2D2BQ6DHV5 1058 aa25.8■■□□□ 1.72
VPS28-212ENST00000530836 ARHGAP27Q6ZUM4 889 aa25.8■■□□□ 1.72
VPS28-212ENST00000530836 SP8Q8IXZ3 490 aa25.8■■□□□ 1.72
VPS28-212ENST00000530836 RILPL2Q969X0 211 aa25.8■■□□□ 1.72
VPS28-212ENST00000530836 MROH5Q6ZUA9 1318 aa25.79■■□□□ 1.72
VPS28-212ENST00000530836 ATP5JP18859 108 aa25.79■■□□□ 1.72
VPS28-212ENST00000530836 IGHMBP2P38935 993 aaKnown RBP25.79■■□□□ 1.72
VPS28-212ENST00000530836 OLFM4Q6UX06 510 aa25.79■■□□□ 1.72
VPS28-212ENST00000530836 ANKRD18AQ8IVF6 992 aa25.79■■□□□ 1.72
VPS28-212ENST00000530836 DBNLQ9UJU6 430 aaKnown RBP25.79■■□□□ 1.72
VPS28-212ENST00000530836 ZNF609O15014 1411 aa25.79■■□□□ 1.72
VPS28-212ENST00000530836 MFAP1P55081 439 aaKnown RBP25.78■■□□□ 1.72
VPS28-212ENST00000530836 METTL24Q5JXM2 366 aa25.78■■□□□ 1.72
VPS28-212ENST00000530836 MPHOSPH8Q99549 860 aa25.78■■□□□ 1.72
VPS28-212ENST00000530836 CCDC93Q567U6 631 aa25.77■■□□□ 1.72
VPS28-212ENST00000530836 TMX4Q9H1E5 349 aaPredicted RBP25.77■■□□□ 1.72
VPS28-212ENST00000530836 TLR7Q9NYK1 1049 aaKnown RBP25.77■■□□□ 1.72
VPS28-212ENST00000530836 RTKN2Q8IZC4 609 aa25.77■■□□□ 1.72
VPS28-212ENST00000530836 EVI5LQ96CN4 794 aa25.77■■□□□ 1.72
VPS28-212ENST00000530836 TBC1D32Q96NH3 1257 aa25.77■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms