RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 RNF20Q5VTR2 975 aa16.69■□□□□ 0.26
USP48-213ENST00000529637 ANKRD13DQ6ZTN6 518 aa16.69■□□□□ 0.26
USP48-213ENST00000529637 ZSCAN31Q96LW9 406 aaPredicted RBP16.69■□□□□ 0.26
USP48-213ENST00000529637 SLC52A2Q9HAB3 445 aa16.69■□□□□ 0.26
USP48-213ENST00000529637 PLCD3Q8N3E9 789 aa16.69■□□□□ 0.26
USP48-213ENST00000529637 PGBD1Q96JS3 809 aa16.69■□□□□ 0.26
USP48-213ENST00000529637 GOLGA6L4A6NEF3 574 aa16.68■□□□□ 0.26
USP48-213ENST00000529637 PSMA5P28066 241 aa16.68■□□□□ 0.26
USP48-213ENST00000529637 GCKRQ14397 625 aa16.68■□□□□ 0.26
USP48-213ENST00000529637 LRRN4CLQ8ND94 238 aa16.68■□□□□ 0.26
USP48-213ENST00000529637 SPATA32Q96LK8 384 aa16.68■□□□□ 0.26
USP48-213ENST00000529637 ZSWIM6Q9HCJ5 1215 aa16.68■□□□□ 0.26
USP48-213ENST00000529637 SH2B1Q9NRF2 756 aaPredicted RBP16.68■□□□□ 0.26
USP48-213ENST00000529637 FAM53CQ9NYF3 392 aa16.68■□□□□ 0.26
USP48-213ENST00000529637 NPHP3Q7Z494 1330 aa16.68■□□□□ 0.26
USP48-213ENST00000529637 PDIA6Q15084 440 aa16.68■□□□□ 0.26
USP48-213ENST00000529637 SLC27A2O14975 620 aa16.68■□□□□ 0.26
USP48-213ENST00000529637 ATF3P18847 181 aa16.68■□□□□ 0.26
USP48-213ENST00000529637 NECTIN1Q15223 517 aa16.68■□□□□ 0.26
USP48-213ENST00000529637 PTPN14Q15678 1187 aa16.68■□□□□ 0.26
USP48-213ENST00000529637 NYAP1Q6ZVC0 841 aa16.68■□□□□ 0.26
USP48-213ENST00000529637 FILIP1Q7Z7B0 1213 aa16.68■□□□□ 0.26
USP48-213ENST00000529637 SKILP12757 684 aa16.67■□□□□ 0.26
USP48-213ENST00000529637 LEO1Q8WVC0 666 aaPredicted RBP16.67■□□□□ 0.26
USP48-213ENST00000529637 CLSTN2Q9H4D0 955 aa16.67■□□□□ 0.26
USP48-213ENST00000529637 TAF6LQ9Y6J9 622 aa16.67■□□□□ 0.26
USP48-213ENST00000529637 NCAPD2Q15021 1401 aa16.67■□□□□ 0.26
USP48-213ENST00000529637 CAPN2P17655 700 aa16.67■□□□□ 0.26
USP48-213ENST00000529637 C11orf57Q6ZUT1 292 aaPredicted RBP16.67■□□□□ 0.26
USP48-213ENST00000529637 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.67■□□□□ 0.26
USP48-213ENST00000529637 CDK11BP21127 795 aaKnown RBP16.66■□□□□ 0.26
USP48-213ENST00000529637 RBM43Q6ZSC3 357 aaKnown RBP16.66■□□□□ 0.26
USP48-213ENST00000529637 A0A087WZG4 1122 aa16.66■□□□□ 0.26
USP48-213ENST00000529637 HSP90B1P14625 803 aaKnown RBP16.66■□□□□ 0.26
USP48-213ENST00000529637 TFCP2Q12800 502 aa16.66■□□□□ 0.26
USP48-213ENST00000529637 ZNF589Q86UQ0 364 aaPredicted RBP16.66■□□□□ 0.26
USP48-213ENST00000529637 IFNL2Q8IZJ0 200 aa16.66■□□□□ 0.26
USP48-213ENST00000529637 TIGD1Q96MW7 591 aa16.66■□□□□ 0.26
USP48-213ENST00000529637 METTL22Q9BUU2 404 aaPredicted RBP16.66■□□□□ 0.26
USP48-213ENST00000529637 ELP1O95163 1332 aa16.66■□□□□ 0.26
USP48-213ENST00000529637 PHKG2P15735 406 aa16.66■□□□□ 0.26
USP48-213ENST00000529637 BICD2Q8TD16 824 aa16.66■□□□□ 0.26
USP48-213ENST00000529637 MAP4K1Q92918 833 aa16.66■□□□□ 0.26
USP48-213ENST00000529637 GTF3C6Q969F1 213 aa16.66■□□□□ 0.26
USP48-213ENST00000529637 DDX11Q96FC9 970 aa16.66■□□□□ 0.26
USP48-213ENST00000529637 NEUROD6Q96NK8 337 aa16.66■□□□□ 0.26
USP48-213ENST00000529637 CCDC66A2RUB6 948 aa16.65■□□□□ 0.26
USP48-213ENST00000529637 CABP4P57796 275 aa16.65■□□□□ 0.26
USP48-213ENST00000529637 KLHL34Q8N239 644 aa16.65■□□□□ 0.26
USP48-213ENST00000529637 TM6SF1Q9BZW5 370 aa16.65■□□□□ 0.26
USP48-213ENST00000529637 ZNF330Q9Y3S2 320 aaPredicted RBP16.65■□□□□ 0.26
USP48-213ENST00000529637 SNRPA1P09661 255 aaKnown RBP16.65■□□□□ 0.26
USP48-213ENST00000529637 IQCB1Q15051 598 aa16.65■□□□□ 0.26
USP48-213ENST00000529637 NPHP4O75161 1426 aaPredicted RBP16.65■□□□□ 0.26
USP48-213ENST00000529637 MED1Q15648 1581 aaPredicted RBP16.65■□□□□ 0.26
USP48-213ENST00000529637 ERCC6LQ2NKX8 1250 aa16.64■□□□□ 0.26
USP48-213ENST00000529637 KDM3BQ7LBC6 1761 aa16.64■□□□□ 0.25
USP48-213ENST00000529637 CCDC69A6NI79 296 aa16.64■□□□□ 0.25
USP48-213ENST00000529637 CHGBP05060 677 aa16.64■□□□□ 0.25
USP48-213ENST00000529637 CCZ1BP86790 482 aa16.64■□□□□ 0.25
USP48-213ENST00000529637 CCZ1P86791 482 aaPredicted RBP16.64■□□□□ 0.25
USP48-213ENST00000529637 CEBPZQ03701 1054 aaKnown RBP16.64■□□□□ 0.25
USP48-213ENST00000529637 CCDC129Q6ZRS4 1044 aa16.64■□□□□ 0.25
USP48-213ENST00000529637 DDX46Q7L014 1031 aaKnown RBP16.64■□□□□ 0.25
USP48-213ENST00000529637 C19orf44Q9H6X5 657 aa16.64■□□□□ 0.25
USP48-213ENST00000529637 DDX19AQ9NUU7 478 aaKnown RBP16.64■□□□□ 0.25
USP48-213ENST00000529637 FOSBP53539 338 aa16.64■□□□□ 0.25
USP48-213ENST00000529637 ERCC4Q92889 916 aaPredicted RBP16.64■□□□□ 0.25
USP48-213ENST00000529637 CHD2O14647 1828 aaKnown RBP16.64■□□□□ 0.25
USP48-213ENST00000529637 FBXW7Q969H0 707 aa16.63■□□□□ 0.25
USP48-213ENST00000529637 FMNL2Q96PY5 1086 aa16.63■□□□□ 0.25
USP48-213ENST00000529637 DBNLQ9UJU6 430 aaKnown RBP16.63■□□□□ 0.25
USP48-213ENST00000529637 ERO1AQ96HE7 468 aa16.62■□□□□ 0.25
USP48-213ENST00000529637 DBNDD2Q9BQY9 259 aa16.62■□□□□ 0.25
USP48-213ENST00000529637 LRRC2Q9BYS8 371 aa16.62■□□□□ 0.25
USP48-213ENST00000529637 SCAND2PQ9GZW5 306 aaPredicted RBP16.62■□□□□ 0.25
USP48-213ENST00000529637 HEG1Q9ULI3 1381 aa16.62■□□□□ 0.25
USP48-213ENST00000529637 CCAR2Q8N163 923 aaKnown RBP16.62■□□□□ 0.25
USP48-213ENST00000529637 SEC62Q99442 399 aaKnown RBP16.62■□□□□ 0.25
USP48-213ENST00000529637 LMBR1LQ6UX01 489 aa16.62■□□□□ 0.25
USP48-213ENST00000529637 JAK2O60674 1132 aa16.61■□□□□ 0.25
USP48-213ENST00000529637 SLU7O95391 586 aaKnown RBP16.61■□□□□ 0.25
USP48-213ENST00000529637 ANKRD1Q15327 319 aa16.61■□□□□ 0.25
USP48-213ENST00000529637 TNNI3KQ59H18 835 aa16.61■□□□□ 0.25
USP48-213ENST00000529637 FPGT-TNNI3KV9GXZ4 949 aa16.61■□□□□ 0.25
USP48-213ENST00000529637 GOLGA6L19H0YKK7 550 aa16.61■□□□□ 0.25
USP48-213ENST00000529637 PDCP20941 246 aa16.61■□□□□ 0.25
USP48-213ENST00000529637 HNRNPH2P55795 449 aaKnown RBP16.61■□□□□ 0.25
USP48-213ENST00000529637 N4BP2Q86UW6 1770 aaPredicted RBP16.61■□□□□ 0.25
USP48-213ENST00000529637 RPS6KB1P23443 525 aa16.6■□□□□ 0.25
USP48-213ENST00000529637 FTOQ9C0B1 505 aaKnown RBP eCLIP16.6■□□□□ 0.25
USP48-213ENST00000529637 FHOD1Q9Y613 1164 aa16.6■□□□□ 0.25
USP48-213ENST00000529637 LMO7Q8WWI1 1683 aa16.6■□□□□ 0.25
USP48-213ENST00000529637 UTYO14607 1347 aa16.6■□□□□ 0.25
USP48-213ENST00000529637 CYP27B1O15528 508 aa16.6■□□□□ 0.25
USP48-213ENST00000529637 CDC25BP30305 580 aa16.6■□□□□ 0.25
USP48-213ENST00000529637 NOL10Q9BSC4 688 aaKnown RBP16.6■□□□□ 0.25
USP48-213ENST00000529637 PTPN12Q05209 780 aaKnown RBP16.6■□□□□ 0.25
USP48-213ENST00000529637 DCAF5Q96JK2 942 aa16.6■□□□□ 0.25
USP48-213ENST00000529637 TULP2O00295 520 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms