RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 CASC1Q6TDU7 716 aa25.67■■□□□ 1.7
VPS28-208ENST00000527797 ANKRD18AQ8IVF6 992 aa25.67■■□□□ 1.7
VPS28-208ENST00000527797 ZNF609O15014 1411 aa25.67■■□□□ 1.7
VPS28-208ENST00000527797 LRP5O75197 1615 aa25.66■■□□□ 1.7
VPS28-208ENST00000527797 RIC1Q4ADV7 1423 aa25.66■■□□□ 1.7
VPS28-208ENST00000527797 CNTROBQ8N137 903 aa25.66■■□□□ 1.7
VPS28-208ENST00000527797 UPF2Q9HAU5 1272 aaKnown RBP25.66■■□□□ 1.7
VPS28-208ENST00000527797 TUBGCP6Q96RT7 1819 aa25.64■■□□□ 1.7
VPS28-208ENST00000527797 EIF5BO60841 1220 aaKnown RBP25.64■■□□□ 1.7
VPS28-208ENST00000527797 PDE8BO95263 885 aa25.64■■□□□ 1.7
VPS28-208ENST00000527797 ATP5JP18859 108 aa25.64■■□□□ 1.7
VPS28-208ENST00000527797 VGLL2Q8N8G2 317 aa25.64■■□□□ 1.7
VPS28-208ENST00000527797 MAP4K4O95819 1239 aaPredicted RBP25.63■■□□□ 1.69
VPS28-208ENST00000527797 ATP2B3Q16720 1220 aa25.63■■□□□ 1.69
VPS28-208ENST00000527797 DDX46Q7L014 1031 aaKnown RBP25.63■■□□□ 1.69
VPS28-208ENST00000527797 BOLA2Q9H3K6 86 aa25.63■■□□□ 1.69
VPS28-208ENST00000527797 BSDC1Q9NW68 430 aaPredicted RBP25.63■■□□□ 1.69
VPS28-208ENST00000527797 MFAP1P55081 439 aaKnown RBP25.62■■□□□ 1.69
VPS28-208ENST00000527797 RPS8P62241 208 aaKnown RBP25.61■■□□□ 1.69
VPS28-208ENST00000527797 CELF1Q92879 486 aaKnown RBP25.61■■□□□ 1.69
VPS28-208ENST00000527797 EVI5LQ96CN4 794 aa25.61■■□□□ 1.69
VPS28-208ENST00000527797 XAGE2Q96GT9 111 aa25.61■■□□□ 1.69
VPS28-208ENST00000527797 PARP3Q9Y6F1 533 aa25.61■■□□□ 1.69
VPS28-208ENST00000527797 MMP10P09238 476 aa25.6■■□□□ 1.69
VPS28-208ENST00000527797 PUM3Q15397 648 aaKnown RBP25.6■■□□□ 1.69
VPS28-208ENST00000527797 CCDC158Q5M9N0 1113 aa25.6■■□□□ 1.69
VPS28-208ENST00000527797 GORABQ5T7V8 394 aa25.6■■□□□ 1.69
VPS28-208ENST00000527797 HELBQ8NG08 1087 aaPredicted RBP25.6■■□□□ 1.69
VPS28-208ENST00000527797 CHRNDQ07001 517 aa25.59■■□□□ 1.69
VPS28-208ENST00000527797 MSL1Q68DK7 614 aa25.59■■□□□ 1.69
VPS28-208ENST00000527797 LPIN2Q92539 896 aa25.59■■□□□ 1.69
VPS28-208ENST00000527797 ADORA1P30542 326 aa25.58■■□□□ 1.69
VPS28-208ENST00000527797 RPGRQ92834 1020 aaKnown RBP25.58■■□□□ 1.69
VPS28-208ENST00000527797 TAF5LO75529 589 aa25.57■■□□□ 1.68
VPS28-208ENST00000527797 FGFR2P21802 821 aa25.57■■□□□ 1.68
VPS28-208ENST00000527797 CHMLP26374 656 aa25.57■■□□□ 1.68
VPS28-208ENST00000527797 CRY2Q49AN0 593 aa25.57■■□□□ 1.68
VPS28-208ENST00000527797 TNRC6CQ9HCJ0 1690 aaKnown RBP25.57■■□□□ 1.68
VPS28-208ENST00000527797 SLC5A1P13866 664 aa25.56■■□□□ 1.68
VPS28-208ENST00000527797 TTC39AQ5SRH9 613 aa25.56■■□□□ 1.68
VPS28-208ENST00000527797 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.56■■□□□ 1.68
VPS28-208ENST00000527797 HAUS7Q99871 368 aa25.56■■□□□ 1.68
VPS28-208ENST00000527797 GRAPQ13588 217 aa25.55■■□□□ 1.68
VPS28-208ENST00000527797 GRAPLQ8TC17 118 aaPredicted RBP25.55■■□□□ 1.68
VPS28-208ENST00000527797 RBM17Q96I25 401 aaKnown RBP25.55■■□□□ 1.68
VPS28-208ENST00000527797 BRIP1Q9BX63 1249 aa25.55■■□□□ 1.68
VPS28-208ENST00000527797 MINPP1Q9UNW1 487 aa25.55■■□□□ 1.68
VPS28-208ENST00000527797 KLRG2A4D1S0 409 aaPredicted RBP25.55■■□□□ 1.68
VPS28-208ENST00000527797 IFIT1P09914 478 aaKnown RBP25.55■■□□□ 1.68
VPS28-208ENST00000527797 COL4A1P02462 1669 aa25.54■■□□□ 1.68
VPS28-208ENST00000527797 DNAJC2Q99543 621 aaKnown RBP25.54■■□□□ 1.68
VPS28-208ENST00000527797 QSER1Q2KHR3 1735 aa25.53■■□□□ 1.68
VPS28-208ENST00000527797 ANP32AP39687 249 aaKnown RBP25.53■■□□□ 1.68
VPS28-208ENST00000527797 CASZ1Q86V15 1759 aa25.53■■□□□ 1.68
VPS28-208ENST00000527797 ANKRD2Q9GZV1 360 aa25.52■■□□□ 1.68
VPS28-208ENST00000527797 TBC1D32Q96NH3 1257 aa25.52■■□□□ 1.68
VPS28-208ENST00000527797 ESYT1Q9BSJ8 1104 aa25.52■■□□□ 1.68
VPS28-208ENST00000527797 FSD1Q9BTV5 496 aa25.52■■□□□ 1.68
VPS28-208ENST00000527797 C22orf23Q9BZE7 217 aa25.52■■□□□ 1.68
VPS28-208ENST00000527797 HIP1O00291 1037 aa25.51■■□□□ 1.67
VPS28-208ENST00000527797 REC8O95072 547 aa25.51■■□□□ 1.67
VPS28-208ENST00000527797 HOXA10P31260 410 aaPredicted RBP25.51■■□□□ 1.67
VPS28-208ENST00000527797 UBE4AQ14139 1066 aa25.51■■□□□ 1.67
VPS28-208ENST00000527797 ZNF512BQ96KM6 892 aaPredicted RBP25.51■■□□□ 1.67
VPS28-208ENST00000527797 DIAPH3Q9NSV4 1193 aa25.51■■□□□ 1.67
VPS28-208ENST00000527797 PDE6BP35913 854 aa25.5■■□□□ 1.67
VPS28-208ENST00000527797 CRAMP1Q96RY5 1269 aa25.5■■□□□ 1.67
VPS28-208ENST00000527797 NRXN2Q9P2S2 1712 aa25.5■■□□□ 1.67
VPS28-208ENST00000527797 SPEF2Q9C093 1822 aa25.49■■□□□ 1.67
VPS28-208ENST00000527797 SNAP23O00161 211 aa25.49■■□□□ 1.67
VPS28-208ENST00000527797 UQCRFS1P1P0C7P4 283 aa25.49■■□□□ 1.67
VPS28-208ENST00000527797 CCDC102BQ68D86 513 aa25.49■■□□□ 1.67
VPS28-208ENST00000527797 EDC3Q96F86 508 aaKnown RBP25.49■■□□□ 1.67
VPS28-208ENST00000527797 PAG1Q9NWQ8 432 aa25.49■■□□□ 1.67
VPS28-208ENST00000527797 NDUFB9Q9Y6M9 179 aa25.49■■□□□ 1.67
VPS28-208ENST00000527797 SLC16A10Q8TF71 515 aa25.48■■□□□ 1.67
VPS28-208ENST00000527797 RUFY2Q8WXA3 655 aa25.48■■□□□ 1.67
VPS28-208ENST00000527797 GOLIM4O00461 696 aa25.47■■□□□ 1.67
VPS28-208ENST00000527797 BBOX1O75936 387 aa25.47■■□□□ 1.67
VPS28-208ENST00000527797 TAF1P21675 1872 aa25.47■■□□□ 1.67
VPS28-208ENST00000527797 ARID4AP29374 1257 aaPredicted RBP25.46■■□□□ 1.67
VPS28-208ENST00000527797 PHKA1P46020 1223 aa25.46■■□□□ 1.67
VPS28-208ENST00000527797 KCNJ4P48050 445 aa25.46■■□□□ 1.67
VPS28-208ENST00000527797 FKBP4Q02790 459 aaKnown RBP eCLIP25.46■■□□□ 1.67
VPS28-208ENST00000527797 CWC27Q6UX04 472 aaKnown RBP25.46■■□□□ 1.67
VPS28-208ENST00000527797 PDGFDQ9GZP0 370 aaPredicted RBP25.46■■□□□ 1.67
VPS28-208ENST00000527797 TICAM2Q86XR7 235 aa25.45■■□□□ 1.67
VPS28-208ENST00000527797 KBTBD3Q8NAB2 608 aa25.45■■□□□ 1.67
VPS28-208ENST00000527797 RFX7Q2KHR2 1363 aa25.45■■□□□ 1.66
VPS28-208ENST00000527797 SRGNP10124 158 aa25.45■■□□□ 1.66
VPS28-208ENST00000527797 NPR1P16066 1061 aa25.45■■□□□ 1.66
VPS28-208ENST00000527797 RBM25P49756 843 aaKnown RBP25.45■■□□□ 1.66
VPS28-208ENST00000527797 SCARF1Q14162 830 aa25.45■■□□□ 1.66
VPS28-208ENST00000527797 UPF1Q92900 1129 aaKnown RBP eCLIP25.45■■□□□ 1.66
VPS28-208ENST00000527797 USP26Q9BXU7 913 aa25.45■■□□□ 1.66
VPS28-208ENST00000527797 SNRKQ9NRH2 765 aa25.45■■□□□ 1.66
VPS28-208ENST00000527797 SGSM2O43147 1006 aa25.44■■□□□ 1.66
VPS28-208ENST00000527797 MCAMP43121 646 aa25.44■■□□□ 1.66
VPS28-208ENST00000527797 TMC4Q7Z404 712 aa25.44■■□□□ 1.66
VPS28-208ENST00000527797 ZAP70P43403 619 aa25.43■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms