RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 MINPP1Q9UNW1 487 aa11.9□□□□□ -0.5
HDAC3-215ENST00000519474 CACNA1FO60840 1977 aa11.89□□□□□ -0.51
HDAC3-215ENST00000519474 SCN4AP35499 1836 aa11.89□□□□□ -0.51
HDAC3-215ENST00000519474 TNIP1Q15025 636 aa11.89□□□□□ -0.51
HDAC3-215ENST00000519474 MAP1SQ66K74 1059 aaPredicted RBP11.89□□□□□ -0.51
HDAC3-215ENST00000519474 MIER1Q8N108 512 aa11.89□□□□□ -0.51
HDAC3-215ENST00000519474 SSH1Q8WYL5 1049 aa11.89□□□□□ -0.51
HDAC3-215ENST00000519474 KLRG1Q96E93 195 aa11.89□□□□□ -0.51
HDAC3-215ENST00000519474 CDC5LQ99459 802 aaKnown RBP11.89□□□□□ -0.51
HDAC3-215ENST00000519474 EYA3Q99504 573 aa11.89□□□□□ -0.51
HDAC3-215ENST00000519474 DBNDD1Q9H9R9 158 aa11.89□□□□□ -0.51
HDAC3-215ENST00000519474 GPRC5DQ9NZD1 345 aa11.89□□□□□ -0.51
HDAC3-215ENST00000519474 ANKIB1Q9P2G1 1089 aa11.89□□□□□ -0.51
HDAC3-215ENST00000519474 PASKQ96RG2 1323 aa11.88□□□□□ -0.51
HDAC3-215ENST00000519474 PSMD14O00487 310 aa11.88□□□□□ -0.51
HDAC3-215ENST00000519474 ITGA6P23229 1130 aa11.88□□□□□ -0.51
HDAC3-215ENST00000519474 ATP2B4P23634 1241 aa11.88□□□□□ -0.51
HDAC3-215ENST00000519474 LMOD1P29536 600 aaPredicted RBP11.88□□□□□ -0.51
HDAC3-215ENST00000519474 GMPSP49915 693 aaPredicted RBP11.88□□□□□ -0.51
HDAC3-215ENST00000519474 HIRAP54198 1017 aaPredicted RBP11.88□□□□□ -0.51
HDAC3-215ENST00000519474 EPHA10Q5JZY3 1008 aa11.88□□□□□ -0.51
HDAC3-215ENST00000519474 USP50Q70EL3 339 aaPredicted RBP11.88□□□□□ -0.51
HDAC3-215ENST00000519474 CNOT7Q9UIV1 285 aaKnown RBP11.88□□□□□ -0.51
HDAC3-215ENST00000519474 GGA1Q9UJY5 639 aa11.88□□□□□ -0.51
HDAC3-215ENST00000519474 ZBTB12Q9Y330 459 aaPredicted RBP11.88□□□□□ -0.51
HDAC3-215ENST00000519474 SHTN1A0MZ66 631 aa11.87□□□□□ -0.51
HDAC3-215ENST00000519474 ECE2O60344 883 aa11.87□□□□□ -0.51
HDAC3-215ENST00000519474 ALDH1L1O75891 902 aa11.87□□□□□ -0.51
HDAC3-215ENST00000519474 UFL1O94874 794 aa11.87□□□□□ -0.51
HDAC3-215ENST00000519474 VIL1P09327 827 aaKnown RBP11.87□□□□□ -0.51
HDAC3-215ENST00000519474 SLC4A10Q6U841 1118 aa11.87□□□□□ -0.51
HDAC3-215ENST00000519474 DPF2Q92785 391 aa11.87□□□□□ -0.51
HDAC3-215ENST00000519474 BCL2L13Q9BXK5 485 aa11.87□□□□□ -0.51
HDAC3-215ENST00000519474 ADARB2Q9NS39 739 aaKnown RBP11.87□□□□□ -0.51
HDAC3-215ENST00000519474 PGAP2Q9UHJ9 254 aa11.87□□□□□ -0.51
HDAC3-215ENST00000519474 RTL9Q8NET4 1388 aa11.87□□□□□ -0.51
HDAC3-215ENST00000519474 DUOX1Q9NRD9 1551 aa11.87□□□□□ -0.51
HDAC3-215ENST00000519474 GRM8O00222 908 aa11.86□□□□□ -0.51
HDAC3-215ENST00000519474 FMR1Q06787 632 aaKnown RBP eCLIP11.86□□□□□ -0.51
HDAC3-215ENST00000519474 DIEXFQ68CQ4 756 aaKnown RBP11.86□□□□□ -0.51
HDAC3-215ENST00000519474 LMBR1LQ6UX01 489 aa11.86□□□□□ -0.51
HDAC3-215ENST00000519474 JMYQ8N9B5 988 aa11.86□□□□□ -0.51
HDAC3-215ENST00000519474 KAZALD1Q96I82 304 aa11.86□□□□□ -0.51
HDAC3-215ENST00000519474 SRCIN1Q9C0H9 1055 aa11.86□□□□□ -0.51
HDAC3-215ENST00000519474 LTBP1Q14766 1721 aa11.86□□□□□ -0.51
HDAC3-215ENST00000519474 XDHP47989 1333 aa11.86□□□□□ -0.51
HDAC3-215ENST00000519474 IGHMBP2P38935 993 aaKnown RBP11.85□□□□□ -0.51
HDAC3-215ENST00000519474 CCT4P50991 539 aaKnown RBP11.85□□□□□ -0.51
HDAC3-215ENST00000519474 FAM161AQ3B820 660 aa11.85□□□□□ -0.51
HDAC3-215ENST00000519474 ALDH1L2Q3SY69 923 aa11.85□□□□□ -0.51
HDAC3-215ENST00000519474 TXNRD3Q86VQ6 643 aa11.85□□□□□ -0.51
HDAC3-215ENST00000519474 CREBZFQ9NS37 354 aa11.85□□□□□ -0.51
HDAC3-215ENST00000519474 C9orf78Q9NZ63 289 aaPredicted RBP11.85□□□□□ -0.51
HDAC3-215ENST00000519474 LEMD3Q9Y2U8 911 aa11.85□□□□□ -0.51
HDAC3-215ENST00000519474 LRRC37AA6NMS7 1700 aa11.84□□□□□ -0.51
HDAC3-215ENST00000519474 ANKRD18BA2A2Z9 1011 aa11.84□□□□□ -0.51
HDAC3-215ENST00000519474 G3V3G9 751 aa11.84□□□□□ -0.51
HDAC3-215ENST00000519474 H7C1D1 291 aa11.84□□□□□ -0.51
HDAC3-215ENST00000519474 NBPF7P0C2Y1 421 aaPredicted RBP11.84□□□□□ -0.51
HDAC3-215ENST00000519474 IFIT5Q13325 482 aaKnown RBP11.84□□□□□ -0.51
HDAC3-215ENST00000519474 DCAF8Q5TAQ9 597 aa11.84□□□□□ -0.51
HDAC3-215ENST00000519474 SAMD7Q7Z3H4 446 aa11.84□□□□□ -0.51
HDAC3-215ENST00000519474 SUCLG2Q96I99 432 aa11.84□□□□□ -0.51
HDAC3-215ENST00000519474 MPHOSPH8Q99549 860 aa11.84□□□□□ -0.51
HDAC3-215ENST00000519474 UTYO14607 1347 aa11.84□□□□□ -0.51
HDAC3-215ENST00000519474 TMEM88BA6NKF7 163 aa11.83□□□□□ -0.52
HDAC3-215ENST00000519474 SNAP23O00161 211 aa11.83□□□□□ -0.52
HDAC3-215ENST00000519474 CHRNDQ07001 517 aa11.83□□□□□ -0.52
HDAC3-215ENST00000519474 CST9Q5W186 159 aa11.83□□□□□ -0.52
HDAC3-215ENST00000519474 PODNQ7Z5L7 613 aa11.83□□□□□ -0.52
HDAC3-215ENST00000519474 MICALL2Q8IY33 904 aa11.83□□□□□ -0.52
HDAC3-215ENST00000519474 HELBQ8NG08 1087 aaPredicted RBP11.83□□□□□ -0.52
HDAC3-215ENST00000519474 TRPM4Q8TD43 1214 aa11.83□□□□□ -0.52
HDAC3-215ENST00000519474 ZC3H15Q8WU90 426 aaKnown RBP11.83□□□□□ -0.52
HDAC3-215ENST00000519474 ZNF594Q96JF6 807 aaPredicted RBP11.83□□□□□ -0.52
HDAC3-215ENST00000519474 GMLQ99445 158 aa11.83□□□□□ -0.52
HDAC3-215ENST00000519474 ANKRD2Q9GZV1 360 aa11.83□□□□□ -0.52
HDAC3-215ENST00000519474 USP44Q9H0E7 712 aa11.83□□□□□ -0.52
HDAC3-215ENST00000519474 PTPRCP08575 1304 aa11.83□□□□□ -0.52
HDAC3-215ENST00000519474 ADAMTSL1Q8N6G6 1762 aa11.82□□□□□ -0.52
HDAC3-215ENST00000519474 TRAF5O00463 557 aa11.82□□□□□ -0.52
HDAC3-215ENST00000519474 TAF5LO75529 589 aa11.82□□□□□ -0.52
HDAC3-215ENST00000519474 EGFRP00533 1210 aa11.82□□□□□ -0.52
HDAC3-215ENST00000519474 CT47B1P0C2W7 299 aaPredicted RBP11.82□□□□□ -0.52
HDAC3-215ENST00000519474 RPS12P25398 132 aaKnown RBP11.82□□□□□ -0.52
HDAC3-215ENST00000519474 BRPF1P55201 1214 aaPredicted RBP11.82□□□□□ -0.52
HDAC3-215ENST00000519474 RBM26Q5T8P6 1007 aaKnown RBP11.82□□□□□ -0.52
HDAC3-215ENST00000519474 NOB1Q9ULX3 412 aaKnown RBP11.82□□□□□ -0.52
HDAC3-215ENST00000519474 ZNF804BA4D1E1 1349 aa11.82□□□□□ -0.52
HDAC3-215ENST00000519474 KLRK1P26718 216 aa11.81□□□□□ -0.52
HDAC3-215ENST00000519474 CCDC57Q2TAC2 916 aa11.81□□□□□ -0.52
HDAC3-215ENST00000519474 TBC1D10BQ4KMP7 808 aaPredicted RBP11.81□□□□□ -0.52
HDAC3-215ENST00000519474 RSBN1LQ6PCB5 846 aaPredicted RBP11.81□□□□□ -0.52
HDAC3-215ENST00000519474 HOMEZQ8IX15 550 aa11.81□□□□□ -0.52
HDAC3-215ENST00000519474 AGBL3Q8NEM8 1001 aa11.81□□□□□ -0.52
HDAC3-215ENST00000519474 COA1Q9GZY4 146 aa11.81□□□□□ -0.52
HDAC3-215ENST00000519474 MKRN1Q9UHC7 482 aaKnown RBP11.81□□□□□ -0.52
HDAC3-215ENST00000519474 CHMP3Q9Y3E7 222 aa11.81□□□□□ -0.52
HDAC3-215ENST00000519474 USP17L3A6NCW0 530 aa11.8□□□□□ -0.52
HDAC3-215ENST00000519474 USP17L4A6NCW7 530 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms