RNA–Protein interactions for RNA: ENST00000495010.5

VARS-228, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 1,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-228ENST00000495010 ADM5C9JUS6 153 aa18.53■□□□□ 0.56
VARS-228ENST00000495010 IRS4O14654 1257 aaPredicted RBP18.53■□□□□ 0.56
VARS-228ENST00000495010 HSP90B1P14625 803 aaKnown RBP18.53■□□□□ 0.56
VARS-228ENST00000495010 RPS8P62241 208 aaKnown RBP18.53■□□□□ 0.56
VARS-228ENST00000495010 SULF1Q8IWU6 871 aa18.53■□□□□ 0.56
VARS-228ENST00000495010 DDX60Q8IY21 1712 aaKnown RBP18.53■□□□□ 0.56
VARS-228ENST00000495010 EGFRP00533 1210 aa18.52■□□□□ 0.56
VARS-228ENST00000495010 KIF23Q02241 960 aaPredicted RBP18.52■□□□□ 0.56
VARS-228ENST00000495010 WDR43Q15061 677 aaKnown RBP eCLIP18.52■□□□□ 0.56
VARS-228ENST00000495010 KIF4BQ2VIQ3 1234 aa18.52■□□□□ 0.56
VARS-228ENST00000495010 TBC1D16Q8TBP0 767 aa18.52■□□□□ 0.56
VARS-228ENST00000495010 RUNDC1Q96C34 613 aa18.52■□□□□ 0.56
VARS-228ENST00000495010 KCNQ5Q9NR82 932 aa18.52■□□□□ 0.56
VARS-228ENST00000495010 SAGE1Q9NXZ1 904 aa18.52■□□□□ 0.56
VARS-228ENST00000495010 ANKIB1Q9P2G1 1089 aa18.52■□□□□ 0.56
VARS-228ENST00000495010 RIC3Q7Z5B4 369 aa18.51■□□□□ 0.55
VARS-228ENST00000495010 FAM155AB1AL88 458 aaPredicted RBP18.5■□□□□ 0.55
VARS-228ENST00000495010 GOLGA2Q08379 1002 aa18.5■□□□□ 0.55
VARS-228ENST00000495010 GGA3Q9NZ52 723 aa18.5■□□□□ 0.55
VARS-228ENST00000495010 RTL9Q8NET4 1388 aa18.5■□□□□ 0.55
VARS-228ENST00000495010 TRPA1O75762 1119 aa18.49■□□□□ 0.55
VARS-228ENST00000495010 UFL1O94874 794 aa18.49■□□□□ 0.55
VARS-228ENST00000495010 VIL1P09327 827 aaKnown RBP18.49■□□□□ 0.55
VARS-228ENST00000495010 TRIM28Q13263 835 aaKnown RBP18.49■□□□□ 0.55
VARS-228ENST00000495010 DUSP27Q5VZP5 1158 aa18.49■□□□□ 0.55
VARS-228ENST00000495010 GGA1Q9UJY5 639 aa18.49■□□□□ 0.55
VARS-228ENST00000495010 TRIM35Q9UPQ4 493 aa18.49■□□□□ 0.55
VARS-228ENST00000495010 ZBTB38Q8NAP3 1195 aaPredicted RBP18.48■□□□□ 0.55
VARS-228ENST00000495010 RNF186Q9NXI6 227 aa18.48■□□□□ 0.55
VARS-228ENST00000495010 PODXL2Q9NZ53 605 aa18.48■□□□□ 0.55
VARS-228ENST00000495010 POLR2AP24928 1970 aaKnown RBP18.48■□□□□ 0.55
VARS-228ENST00000495010 MYBBP1AQ9BQG0 1328 aaKnown RBP18.48■□□□□ 0.55
VARS-228ENST00000495010 CCDC152Q4G0S7 254 aa18.47■□□□□ 0.55
VARS-228ENST00000495010 CDCA5Q96FF9 252 aa18.47■□□□□ 0.55
VARS-228ENST00000495010 SLC10A3P09131 477 aa18.46■□□□□ 0.55
VARS-228ENST00000495010 SCARF1Q14162 830 aa18.46■□□□□ 0.55
VARS-228ENST00000495010 REM2Q8IYK8 340 aaPredicted RBP18.46■□□□□ 0.55
VARS-228ENST00000495010 AGBL3Q8NEM8 1001 aa18.46■□□□□ 0.55
VARS-228ENST00000495010 SEC31BQ9NQW1 1179 aa18.46■□□□□ 0.55
VARS-228ENST00000495010 ANGEL2Q5VTE6 544 aaKnown RBP18.45■□□□□ 0.54
VARS-228ENST00000495010 RSBN1LQ6PCB5 846 aaPredicted RBP18.45■□□□□ 0.54
VARS-228ENST00000495010 CSRNP1Q96S65 589 aa18.45■□□□□ 0.54
VARS-228ENST00000495010 MYD88Q99836 296 aa18.45■□□□□ 0.54
VARS-228ENST00000495010 MBIPQ9NS73 344 aa18.44■□□□□ 0.54
VARS-228ENST00000495010 ASTN2O75129 1339 aaPredicted RBP18.44■□□□□ 0.54
VARS-228ENST00000495010 AKAP11Q9UKA4 1901 aa18.43■□□□□ 0.54
VARS-228ENST00000495010 PDE8AO60658 829 aa18.43■□□□□ 0.54
VARS-228ENST00000495010 ZNF280AP59817 542 aaPredicted RBP18.43■□□□□ 0.54
VARS-228ENST00000495010 FKBP1BP68106 108 aa18.43■□□□□ 0.54
VARS-228ENST00000495010 ANKRD18AQ8IVF6 992 aa18.43■□□□□ 0.54
VARS-228ENST00000495010 CCDC191Q8NCU4 936 aa18.43■□□□□ 0.54
VARS-228ENST00000495010 CCDC85AQ96PX6 553 aaPredicted RBP18.43■□□□□ 0.54
VARS-228ENST00000495010 PHAXQ9H814 394 aaKnown RBP18.43■□□□□ 0.54
VARS-228ENST00000495010 COL4A1P02462 1669 aa18.43■□□□□ 0.54
VARS-228ENST00000495010 PCCAP05165 728 aaPredicted RBP18.42■□□□□ 0.54
VARS-228ENST00000495010 USP17L8P0C7I0 530 aa18.42■□□□□ 0.54
VARS-228ENST00000495010 SOX10P56693 466 aa18.42■□□□□ 0.54
VARS-228ENST00000495010 CTU1Q7Z7A3 348 aaKnown RBP18.42■□□□□ 0.54
VARS-228ENST00000495010 MYOZ2Q9NPC6 264 aa18.42■□□□□ 0.54
VARS-228ENST00000495010 CWC25Q9NXE8 425 aaPredicted RBP18.42■□□□□ 0.54
VARS-228ENST00000495010 ADAMTS8Q9UP79 889 aa18.42■□□□□ 0.54
VARS-228ENST00000495010 XDHP47989 1333 aa18.42■□□□□ 0.54
VARS-228ENST00000495010 USP17L3A6NCW0 530 aa18.41■□□□□ 0.54
VARS-228ENST00000495010 USP17L4A6NCW7 530 aa18.41■□□□□ 0.54
VARS-228ENST00000495010 ELL2O00472 640 aaPredicted RBP18.41■□□□□ 0.54
VARS-228ENST00000495010 DDX58O95786 925 aaKnown RBP18.41■□□□□ 0.54
VARS-228ENST00000495010 ATP2B4P23634 1241 aa18.41■□□□□ 0.54
VARS-228ENST00000495010 USP17L1Q7RTZ2 530 aa18.41■□□□□ 0.54
VARS-228ENST00000495010 RASAL3Q86YV0 1011 aa18.41■□□□□ 0.54
VARS-228ENST00000495010 SCN9AQ15858 1988 aa18.41■□□□□ 0.54
VARS-228ENST00000495010 CALD1Q05682 793 aaKnown RBP18.4■□□□□ 0.54
VARS-228ENST00000495010 PODNQ7Z5L7 613 aa18.4■□□□□ 0.54
VARS-228ENST00000495010 JARID2Q92833 1246 aaPredicted RBP18.4■□□□□ 0.54
VARS-228ENST00000495010 CHMP4AQ9BY43 222 aa18.4■□□□□ 0.54
VARS-228ENST00000495010 HDAC9Q9UKV0 1011 aa18.4■□□□□ 0.54
VARS-228ENST00000495010 GNAI1P63096 354 aa18.39■□□□□ 0.53
VARS-228ENST00000495010 DDX10Q13206 875 aaKnown RBP18.39■□□□□ 0.53
VARS-228ENST00000495010 TTLL12Q14166 644 aaPredicted RBP18.39■□□□□ 0.53
VARS-228ENST00000495010 CDC5LQ99459 802 aaKnown RBP18.39■□□□□ 0.53
VARS-228ENST00000495010 IFT57Q9NWB7 429 aa18.39■□□□□ 0.53
VARS-228ENST00000495010 PITPNM2Q9BZ72 1349 aa18.39■□□□□ 0.53
VARS-228ENST00000495010 ZNF609O15014 1411 aa18.39■□□□□ 0.53
VARS-228ENST00000495010 OGFOD1Q8N543 542 aa18.38■□□□□ 0.53
VARS-228ENST00000495010 FBXW7Q969H0 707 aa18.38■□□□□ 0.53
VARS-228ENST00000495010 METTL22Q9BUU2 404 aaPredicted RBP18.38■□□□□ 0.53
VARS-228ENST00000495010 ZNF853P0CG23 659 aa18.37■□□□□ 0.53
VARS-228ENST00000495010 NF2P35240 595 aa18.37■□□□□ 0.53
VARS-228ENST00000495010 GMLQ99445 158 aa18.37■□□□□ 0.53
VARS-228ENST00000495010 PCDH10Q9P2E7 1040 aa18.37■□□□□ 0.53
VARS-228ENST00000495010 PAPPA2Q9BXP8 1791 aa18.37■□□□□ 0.53
VARS-228ENST00000495010 UBE2Q2LH0YL09 131 aa18.36■□□□□ 0.53
VARS-228ENST00000495010 PKN2Q16513 984 aaKnown RBP18.36■□□□□ 0.53
VARS-228ENST00000495010 CCDC30Q5VVM6 783 aa18.36■□□□□ 0.53
VARS-228ENST00000495010 SCAF8Q9UPN6 1271 aaKnown RBP18.36■□□□□ 0.53
VARS-228ENST00000495010 CTSWP56202 376 aa18.35■□□□□ 0.53
VARS-228ENST00000495010 MOB2Q70IA6 237 aa18.35■□□□□ 0.53
VARS-228ENST00000495010 MAP3K2Q9Y2U5 619 aa18.35■□□□□ 0.53
VARS-228ENST00000495010 MED23Q9ULK4 1368 aa18.34■□□□□ 0.53
VARS-228ENST00000495010 MYO3BQ8WXR4 1341 aa18.34■□□□□ 0.53
VARS-228ENST00000495010 TBC1D8O95759 1140 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms