RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 DYRK1BQ9Y463 629 aa9.29□□□□□ -0.92
PRPF40A-210ENST00000489741 HRH3Q9Y5N1 445 aa9.29□□□□□ -0.92
PRPF40A-210ENST00000489741 BLMP54132 1417 aaPredicted RBP9.29□□□□□ -0.92
PRPF40A-210ENST00000489741 USP32Q8NFA0 1604 aa9.28□□□□□ -0.92
PRPF40A-210ENST00000489741 USP17L3A6NCW0 530 aa9.28□□□□□ -0.92
PRPF40A-210ENST00000489741 USP17L4A6NCW7 530 aa9.28□□□□□ -0.92
PRPF40A-210ENST00000489741 PHKA2P46019 1235 aa9.28□□□□□ -0.92
PRPF40A-210ENST00000489741 WDR44Q5JSH3 913 aa9.28□□□□□ -0.92
PRPF40A-210ENST00000489741 USP17L2Q6R6M4 530 aa9.28□□□□□ -0.92
PRPF40A-210ENST00000489741 USP17L1Q7RTZ2 530 aa9.28□□□□□ -0.92
PRPF40A-210ENST00000489741 FHDC1Q9C0D6 1143 aaPredicted RBP9.28□□□□□ -0.92
PRPF40A-210ENST00000489741 ADGRB2O60241 1585 aa9.28□□□□□ -0.92
PRPF40A-210ENST00000489741 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.28□□□□□ -0.92
PRPF40A-210ENST00000489741 EIF3AQ14152 1382 aaKnown RBP9.27□□□□□ -0.93
PRPF40A-210ENST00000489741 GPRASP1Q5JY77 1395 aa9.27□□□□□ -0.93
PRPF40A-210ENST00000489741 ATP9BO43861 1147 aa9.27□□□□□ -0.93
PRPF40A-210ENST00000489741 KRT27Q7Z3Y8 459 aa9.27□□□□□ -0.93
PRPF40A-210ENST00000489741 DEFB132Q7Z7B7 95 aa9.27□□□□□ -0.93
PRPF40A-210ENST00000489741 GPR161Q8N6U8 529 aaKnown RBP9.27□□□□□ -0.93
PRPF40A-210ENST00000489741 NUDT16Q96DE0 195 aaKnown RBP9.27□□□□□ -0.93
PRPF40A-210ENST00000489741 CALR3Q96L12 384 aaKnown RBP9.27□□□□□ -0.93
PRPF40A-210ENST00000489741 CUEDC1Q9NWM3 386 aaPredicted RBP9.27□□□□□ -0.93
PRPF40A-210ENST00000489741 BTG4Q9NY30 223 aa9.27□□□□□ -0.93
PRPF40A-210ENST00000489741 SERTAD1Q9UHV2 236 aa9.27□□□□□ -0.93
PRPF40A-210ENST00000489741 PCDHGA11Q9Y5H2 935 aa9.27□□□□□ -0.93
PRPF40A-210ENST00000489741 MARF1Q9Y4F3 1742 aaKnown RBP9.27□□□□□ -0.93
PRPF40A-210ENST00000489741 TRIM50Q86XT4 487 aa9.26□□□□□ -0.93
PRPF40A-210ENST00000489741 PLEKHM2Q8IWE5 1019 aa9.26□□□□□ -0.93
PRPF40A-210ENST00000489741 NGDNQ8NEJ9 315 aaKnown RBP9.26□□□□□ -0.93
PRPF40A-210ENST00000489741 COL25A1Q9BXS0 654 aaPredicted RBP9.26□□□□□ -0.93
PRPF40A-210ENST00000489741 SPATA31A5Q5VU36 1347 aa9.26□□□□□ -0.93
PRPF40A-210ENST00000489741 SPATA31A7Q8IWB4 1347 aa9.26□□□□□ -0.93
PRPF40A-210ENST00000489741 TULP4Q9NRJ4 1543 aa9.26□□□□□ -0.93
PRPF40A-210ENST00000489741 TRIM22Q8IYM9 498 aa9.25□□□□□ -0.93
PRPF40A-210ENST00000489741 RHBDD1Q8TEB9 315 aa9.25□□□□□ -0.93
PRPF40A-210ENST00000489741 CDK19Q9BWU1 502 aa9.25□□□□□ -0.93
PRPF40A-210ENST00000489741 RGPD8O14715 1765 aaPredicted RBP9.24□□□□□ -0.93
PRPF40A-210ENST00000489741 TMEM229AB2RXF0 380 aa9.24□□□□□ -0.93
PRPF40A-210ENST00000489741 H7C1W4 665 aa9.24□□□□□ -0.93
PRPF40A-210ENST00000489741 F11P03951 625 aa9.24□□□□□ -0.93
PRPF40A-210ENST00000489741 SMTNP53814 917 aa9.24□□□□□ -0.93
PRPF40A-210ENST00000489741 NBPF1Q3BBV0 1214 aa9.24□□□□□ -0.93
PRPF40A-210ENST00000489741 NBPF8Q3BBV2 869 aa9.24□□□□□ -0.93
PRPF40A-210ENST00000489741 C4orf17Q53FE4 359 aa9.24□□□□□ -0.93
PRPF40A-210ENST00000489741 ZSCAN1Q8NBB4 408 aa9.24□□□□□ -0.93
PRPF40A-210ENST00000489741 CNTNAP3BQ96NU0 1288 aa9.24□□□□□ -0.93
PRPF40A-210ENST00000489741 CNTNAP3Q9BZ76 1288 aa9.24□□□□□ -0.93
PRPF40A-210ENST00000489741 GPAMQ9HCL2 828 aa9.24□□□□□ -0.93
PRPF40A-210ENST00000489741 CCDC9Q9Y3X0 531 aaKnown RBP9.24□□□□□ -0.93
PRPF40A-210ENST00000489741 POLR3AO14802 1390 aaPredicted RBP9.24□□□□□ -0.93
PRPF40A-210ENST00000489741 TRPM3Q9HCF6 1732 aaPredicted RBP9.23□□□□□ -0.93
PRPF40A-210ENST00000489741 A0A1B0GTH6 734 aa9.23□□□□□ -0.93
PRPF40A-210ENST00000489741 ATP1A2P50993 1020 aa9.23□□□□□ -0.93
PRPF40A-210ENST00000489741 FOXR1Q6PIV2 292 aa9.23□□□□□ -0.93
PRPF40A-210ENST00000489741 ZNF837Q96EG3 531 aaPredicted RBP9.23□□□□□ -0.93
PRPF40A-210ENST00000489741 GMCL1Q96IK5 515 aa9.23□□□□□ -0.93
PRPF40A-210ENST00000489741 STK17AQ9UEE5 414 aa9.23□□□□□ -0.93
PRPF40A-210ENST00000489741 NWD2Q9ULI1 1742 aa9.22□□□□□ -0.93
PRPF40A-210ENST00000489741 ATP7BP35670 1465 aa9.22□□□□□ -0.93
PRPF40A-210ENST00000489741 BACH1O14867 736 aa9.22□□□□□ -0.93
PRPF40A-210ENST00000489741 PLA2G4AP47712 749 aa9.22□□□□□ -0.93
PRPF40A-210ENST00000489741 SF3B2Q13435 895 aaKnown RBP9.22□□□□□ -0.93
PRPF40A-210ENST00000489741 TFIP11Q9UBB9 837 aaKnown RBP9.22□□□□□ -0.93
PRPF40A-210ENST00000489741 ACEP12821 1306 aa9.22□□□□□ -0.93
PRPF40A-210ENST00000489741 SPATA31A1Q5TZJ5 1347 aa9.22□□□□□ -0.93
PRPF40A-210ENST00000489741 ALS2Q96Q42 1657 aa9.22□□□□□ -0.93
PRPF40A-210ENST00000489741 KRT76Q01546 638 aa9.21□□□□□ -0.94
PRPF40A-210ENST00000489741 DBN1Q16643 649 aa9.21□□□□□ -0.94
PRPF40A-210ENST00000489741 RNFT1Q5M7Z0 435 aa9.21□□□□□ -0.94
PRPF40A-210ENST00000489741 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.21□□□□□ -0.94
PRPF40A-210ENST00000489741 TPCN2Q8NHX9 752 aa9.21□□□□□ -0.94
PRPF40A-210ENST00000489741 SLC4A9Q96Q91 983 aa9.21□□□□□ -0.94
PRPF40A-210ENST00000489741 NIFKQ9BYG3 293 aaKnown RBP9.21□□□□□ -0.94
PRPF40A-210ENST00000489741 PRDM11Q9NQV5 511 aa9.21□□□□□ -0.94
PRPF40A-210ENST00000489741 MKRN1Q9UHC7 482 aaKnown RBP9.21□□□□□ -0.94
PRPF40A-210ENST00000489741 MAFBQ9Y5Q3 323 aaPredicted RBP9.21□□□□□ -0.94
PRPF40A-210ENST00000489741 KIAA0232Q92628 1395 aa9.21□□□□□ -0.94
PRPF40A-210ENST00000489741 FAM181BA6NEQ2 426 aa9.2□□□□□ -0.94
PRPF40A-210ENST00000489741 A6NJY4 79 aa9.2□□□□□ -0.94
PRPF40A-210ENST00000489741 CSB-PGBD3P0DP91 1061 aa9.2□□□□□ -0.94
PRPF40A-210ENST00000489741 BAG6P46379 1132 aa9.2□□□□□ -0.94
PRPF40A-210ENST00000489741 ZC3H6P61129 1189 aaKnown RBP9.2□□□□□ -0.94
PRPF40A-210ENST00000489741 CHRNA2Q15822 529 aa9.2□□□□□ -0.94
PRPF40A-210ENST00000489741 PGBD3Q8N328 593 aa9.2□□□□□ -0.94
PRPF40A-210ENST00000489741 OGFOD1Q8N543 542 aa9.2□□□□□ -0.94
PRPF40A-210ENST00000489741 GTPBP3Q969Y2 492 aaKnown RBP9.2□□□□□ -0.94
PRPF40A-210ENST00000489741 NUCKS1Q9H1E3 243 aaKnown RBP9.2□□□□□ -0.94
PRPF40A-210ENST00000489741 DNAAF2Q9NVR5 837 aaKnown RBP9.2□□□□□ -0.94
PRPF40A-210ENST00000489741 ZNF358Q9NW07 568 aa9.2□□□□□ -0.94
PRPF40A-210ENST00000489741 ABCA3Q99758 1704 aa9.19□□□□□ -0.94
PRPF40A-210ENST00000489741 BRWD3Q6RI45 1802 aa9.19□□□□□ -0.94
PRPF40A-210ENST00000489741 PALM3A6NDB9 673 aaPredicted RBP9.19□□□□□ -0.94
PRPF40A-210ENST00000489741 GPR25O00155 361 aa9.19□□□□□ -0.94
PRPF40A-210ENST00000489741 CLDN10P78369 228 aa9.19□□□□□ -0.94
PRPF40A-210ENST00000489741 FAM182BQ5T319 152 aa9.19□□□□□ -0.94
PRPF40A-210ENST00000489741 NUTM2GQ5VZR2 741 aa9.19□□□□□ -0.94
PRPF40A-210ENST00000489741 TRERF1Q96PN7 1200 aa9.19□□□□□ -0.94
PRPF40A-210ENST00000489741 PPP1R12CQ9BZL4 782 aa9.19□□□□□ -0.94
PRPF40A-210ENST00000489741 RBM19Q9Y4C8 960 aaKnown RBP9.19□□□□□ -0.94
PRPF40A-210ENST00000489741 USP19O94966 1318 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms