RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 DICER1Q9UPY3 1922 aaKnown RBP11.52□□□□□ -0.56
HDAC6-232ENST00000489053 GRM8O00222 908 aa11.52□□□□□ -0.57
HDAC6-232ENST00000489053 POTEIP0CG38 1075 aa11.52□□□□□ -0.57
HDAC6-232ENST00000489053 POTEJP0CG39 1038 aa11.52□□□□□ -0.57
HDAC6-232ENST00000489053 ITGA6P23229 1130 aa11.52□□□□□ -0.57
HDAC6-232ENST00000489053 EPS15P42566 896 aa11.52□□□□□ -0.57
HDAC6-232ENST00000489053 HTRA3P83110 453 aa11.52□□□□□ -0.57
HDAC6-232ENST00000489053 SLFN5Q08AF3 891 aa11.52□□□□□ -0.57
HDAC6-232ENST00000489053 CCDC57Q2TAC2 916 aa11.52□□□□□ -0.57
HDAC6-232ENST00000489053 FAM161AQ3B820 660 aa11.52□□□□□ -0.57
HDAC6-232ENST00000489053 BEND3Q5T5X7 828 aa11.52□□□□□ -0.57
HDAC6-232ENST00000489053 FBXW7Q969H0 707 aa11.52□□□□□ -0.57
HDAC6-232ENST00000489053 BSDC1Q9NW68 430 aaPredicted RBP11.52□□□□□ -0.57
HDAC6-232ENST00000489053 GPRC5DQ9NZD1 345 aa11.52□□□□□ -0.57
HDAC6-232ENST00000489053 CT47B1P0C2W7 299 aaPredicted RBP11.51□□□□□ -0.57
HDAC6-232ENST00000489053 SCNN1DP51172 638 aa11.51□□□□□ -0.57
HDAC6-232ENST00000489053 MAP1SQ66K74 1059 aaPredicted RBP11.51□□□□□ -0.57
HDAC6-232ENST00000489053 CNTROBQ8N137 903 aa11.51□□□□□ -0.57
HDAC6-232ENST00000489053 KLRG1Q96E93 195 aa11.51□□□□□ -0.57
HDAC6-232ENST00000489053 GPR101Q96P66 508 aaPredicted RBP11.51□□□□□ -0.57
HDAC6-232ENST00000489053 PLA2G12BQ9BX93 195 aa11.51□□□□□ -0.57
HDAC6-232ENST00000489053 DDX60Q8IY21 1712 aaKnown RBP11.51□□□□□ -0.57
HDAC6-232ENST00000489053 RTL9Q8NET4 1388 aa11.51□□□□□ -0.57
HDAC6-232ENST00000489053 LAMB2P55268 1798 aa11.5□□□□□ -0.57
HDAC6-232ENST00000489053 RPS12P25398 132 aaKnown RBP11.5□□□□□ -0.57
HDAC6-232ENST00000489053 ALDH1L2Q3SY69 923 aa11.5□□□□□ -0.57
HDAC6-232ENST00000489053 MRPL50Q8N5N7 158 aaKnown RBP11.5□□□□□ -0.57
HDAC6-232ENST00000489053 SSH1Q8WYL5 1049 aa11.5□□□□□ -0.57
HDAC6-232ENST00000489053 CDCA7LQ96GN5 454 aa11.5□□□□□ -0.57
HDAC6-232ENST00000489053 CNNM1Q9NRU3 951 aa11.5□□□□□ -0.57
HDAC6-232ENST00000489053 CREBZFQ9NS37 354 aa11.5□□□□□ -0.57
HDAC6-232ENST00000489053 CNOT7Q9UIV1 285 aaKnown RBP11.5□□□□□ -0.57
HDAC6-232ENST00000489053 MINPP1Q9UNW1 487 aa11.5□□□□□ -0.57
HDAC6-232ENST00000489053 TMEM88BA6NKF7 163 aa11.49□□□□□ -0.57
HDAC6-232ENST00000489053 PSMD14O00487 310 aa11.49□□□□□ -0.57
HDAC6-232ENST00000489053 CCT4P50991 539 aaKnown RBP11.49□□□□□ -0.57
HDAC6-232ENST00000489053 HNRNPUQ00839 825 aaKnown RBP eCLIP11.49□□□□□ -0.57
HDAC6-232ENST00000489053 LMBR1LQ6UX01 489 aa11.49□□□□□ -0.57
HDAC6-232ENST00000489053 PAXIP1Q6ZW49 1069 aaPredicted RBP11.49□□□□□ -0.57
HDAC6-232ENST00000489053 MICALL2Q8IY33 904 aa11.49□□□□□ -0.57
HDAC6-232ENST00000489053 ABT1Q9ULW3 272 aaKnown RBP11.49□□□□□ -0.57
HDAC6-232ENST00000489053 LEMD3Q9Y2U8 911 aa11.49□□□□□ -0.57
HDAC6-232ENST00000489053 SCN4AP35499 1836 aa11.49□□□□□ -0.57
HDAC6-232ENST00000489053 YDJCA8MPS7 323 aa11.48□□□□□ -0.57
HDAC6-232ENST00000489053 RBM26Q5T8P6 1007 aaKnown RBP11.48□□□□□ -0.57
HDAC6-232ENST00000489053 MIER1Q8N108 512 aa11.48□□□□□ -0.57
HDAC6-232ENST00000489053 DPF2Q92785 391 aa11.48□□□□□ -0.57
HDAC6-232ENST00000489053 API5Q9BZZ5 524 aaKnown RBP11.48□□□□□ -0.57
HDAC6-232ENST00000489053 HDAC5Q9UQL6 1122 aa11.48□□□□□ -0.57
HDAC6-232ENST00000489053 ZBTB12Q9Y330 459 aaPredicted RBP11.48□□□□□ -0.57
HDAC6-232ENST00000489053 COL4A5P29400 1685 aa11.48□□□□□ -0.57
HDAC6-232ENST00000489053 MED23Q9ULK4 1368 aa11.47□□□□□ -0.57
HDAC6-232ENST00000489053 ZNF804BA4D1E1 1349 aa11.47□□□□□ -0.57
HDAC6-232ENST00000489053 USP17L3A6NCW0 530 aa11.47□□□□□ -0.57
HDAC6-232ENST00000489053 USP17L4A6NCW7 530 aa11.47□□□□□ -0.57
HDAC6-232ENST00000489053 PLIN1O60240 522 aa11.47□□□□□ -0.57
HDAC6-232ENST00000489053 CSF1RP07333 972 aa11.47□□□□□ -0.57
HDAC6-232ENST00000489053 CASP7P55210 303 aa11.47□□□□□ -0.57
HDAC6-232ENST00000489053 LDHAL6AQ6ZMR3 332 aa11.47□□□□□ -0.57
HDAC6-232ENST00000489053 USP17L1Q7RTZ2 530 aa11.47□□□□□ -0.57
HDAC6-232ENST00000489053 PODNQ7Z5L7 613 aa11.47□□□□□ -0.57
HDAC6-232ENST00000489053 MKRN1Q9UHC7 482 aaKnown RBP11.47□□□□□ -0.57
HDAC6-232ENST00000489053 KIF16BQ96L93 1317 aa11.46□□□□□ -0.57
HDAC6-232ENST00000489053 FOXO4P98177 505 aa11.46□□□□□ -0.57
HDAC6-232ENST00000489053 CHRNDQ07001 517 aa11.46□□□□□ -0.57
HDAC6-232ENST00000489053 TBC1D10BQ4KMP7 808 aaPredicted RBP11.46□□□□□ -0.57
HDAC6-232ENST00000489053 RSBN1LQ6PCB5 846 aaPredicted RBP11.46□□□□□ -0.57
HDAC6-232ENST00000489053 ZNF804AQ7Z570 1209 aa11.46□□□□□ -0.57
HDAC6-232ENST00000489053 OGFOD1Q8N543 542 aa11.46□□□□□ -0.57
HDAC6-232ENST00000489053 ZC3H15Q8WU90 426 aaKnown RBP11.46□□□□□ -0.57
HDAC6-232ENST00000489053 DCPSQ96C86 337 aaKnown RBP11.46□□□□□ -0.57
HDAC6-232ENST00000489053 COA1Q9GZY4 146 aa11.46□□□□□ -0.57
HDAC6-232ENST00000489053 ZNF408Q9H9D4 720 aa11.46□□□□□ -0.57
HDAC6-232ENST00000489053 LRRC37AA6NMS7 1700 aa11.46□□□□□ -0.58
HDAC6-232ENST00000489053 DUOX1Q9NRD9 1551 aa11.45□□□□□ -0.58
HDAC6-232ENST00000489053 PASKQ96RG2 1323 aa11.45□□□□□ -0.58
HDAC6-232ENST00000489053 IPO8O15397 1037 aaKnown RBP11.45□□□□□ -0.58
HDAC6-232ENST00000489053 KIF4BQ2VIQ3 1234 aa11.45□□□□□ -0.58
HDAC6-232ENST00000489053 CDC37L1Q7L3B6 337 aa11.45□□□□□ -0.58
HDAC6-232ENST00000489053 DNAJC5GQ8N7S2 189 aa11.45□□□□□ -0.58
HDAC6-232ENST00000489053 AGBL3Q8NEM8 1001 aa11.45□□□□□ -0.58
HDAC6-232ENST00000489053 AIDAQ96BJ3 306 aa11.45□□□□□ -0.58
HDAC6-232ENST00000489053 SUCLG2Q96I99 432 aa11.45□□□□□ -0.58
HDAC6-232ENST00000489053 MYO3BQ8WXR4 1341 aa11.44□□□□□ -0.58
HDAC6-232ENST00000489053 ITGBL1O95965 494 aaPredicted RBP11.44□□□□□ -0.58
HDAC6-232ENST00000489053 VIL1P09327 827 aaKnown RBP11.44□□□□□ -0.58
HDAC6-232ENST00000489053 NBPF7P0C2Y1 421 aaPredicted RBP11.44□□□□□ -0.58
HDAC6-232ENST00000489053 USP17L8P0C7I0 530 aa11.44□□□□□ -0.58
HDAC6-232ENST00000489053 UBTFL1P0CB47 393 aaPredicted RBP11.44□□□□□ -0.58
HDAC6-232ENST00000489053 GRM1Q13255 1194 aa11.44□□□□□ -0.58
HDAC6-232ENST00000489053 SAMD7Q7Z3H4 446 aa11.44□□□□□ -0.58
HDAC6-232ENST00000489053 VPS37DQ86XT2 251 aa11.44□□□□□ -0.58
HDAC6-232ENST00000489053 SULF1Q8IWU6 871 aa11.44□□□□□ -0.58
HDAC6-232ENST00000489053 HELBQ8NG08 1087 aaPredicted RBP11.44□□□□□ -0.58
HDAC6-232ENST00000489053 TRPM4Q8TD43 1214 aa11.44□□□□□ -0.58
HDAC6-232ENST00000489053 ZNF594Q96JF6 807 aaPredicted RBP11.44□□□□□ -0.58
HDAC6-232ENST00000489053 BICC1Q9H694 974 aaKnown RBP11.44□□□□□ -0.58
HDAC6-232ENST00000489053 KCNQ5Q9NR82 932 aa11.44□□□□□ -0.58
HDAC6-232ENST00000489053 NOB1Q9ULX3 412 aaKnown RBP11.44□□□□□ -0.58
HDAC6-232ENST00000489053 CACNA1FO60840 1977 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms