RNA–Protein interactions for RNA: ENST00000487747.5

SMC4-219, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 637 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-219ENST00000487747 GPR152Q8TDT2 470 aa9.11□□□□□ -0.95
SMC4-219ENST00000487747 SSBP4Q9BWG4 385 aaPredicted RBP9.11□□□□□ -0.95
SMC4-219ENST00000487747 HOXD8P13378 290 aaPredicted RBP9.1□□□□□ -0.95
SMC4-219ENST00000487747 ARID4AP29374 1257 aaPredicted RBP9.1□□□□□ -0.95
SMC4-219ENST00000487747 PRSS36Q5K4E3 855 aa9.1□□□□□ -0.95
SMC4-219ENST00000487747 ZMYM1Q5SVZ6 1142 aa9.1□□□□□ -0.95
SMC4-219ENST00000487747 STIM2Q9P246 746 aa9.1□□□□□ -0.95
SMC4-219ENST00000487747 SERPINA10Q9UK55 444 aa9.1□□□□□ -0.95
SMC4-219ENST00000487747 TRIM33Q9UPN9 1127 aa9.1□□□□□ -0.95
SMC4-219ENST00000487747 PTCD1O75127 700 aaKnown RBP9.09□□□□□ -0.95
SMC4-219ENST00000487747 ATP2B4P23634 1241 aa9.09□□□□□ -0.95
SMC4-219ENST00000487747 SOX18P35713 384 aa9.09□□□□□ -0.95
SMC4-219ENST00000487747 WFDC12Q8WWY7 111 aa9.09□□□□□ -0.95
SMC4-219ENST00000487747 PIK3R5Q8WYR1 880 aa9.09□□□□□ -0.95
SMC4-219ENST00000487747 GHRHP01286 108 aa9.08□□□□□ -0.96
SMC4-219ENST00000487747 NOS3P29474 1203 aa9.08□□□□□ -0.96
SMC4-219ENST00000487747 IREB2P48200 963 aaKnown RBP9.08□□□□□ -0.96
SMC4-219ENST00000487747 ADAMTSL4Q6UY14 1074 aa9.08□□□□□ -0.96
SMC4-219ENST00000487747 ATCAYQ86WG3 371 aa9.08□□□□□ -0.96
SMC4-219ENST00000487747 IL22RA1Q8N6P7 574 aa9.08□□□□□ -0.96
SMC4-219ENST00000487747 OR13H1Q8NG92 308 aa9.08□□□□□ -0.96
SMC4-219ENST00000487747 TP53INP1Q96A56 240 aa9.08□□□□□ -0.96
SMC4-219ENST00000487747 DLL1O00548 723 aa9.07□□□□□ -0.96
SMC4-219ENST00000487747 CYP2E1P05181 493 aaPredicted RBP9.07□□□□□ -0.96
SMC4-219ENST00000487747 KRTAP1-3Q8IUG1 177 aa9.07□□□□□ -0.96
SMC4-219ENST00000487747 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.07□□□□□ -0.96
SMC4-219ENST00000487747 ATP11AP98196 1134 aa9.06□□□□□ -0.96
SMC4-219ENST00000487747 IGF2-ASQ6U949 168 aa9.06□□□□□ -0.96
SMC4-219ENST00000487747 MEGF10Q96KG7 1140 aa9.06□□□□□ -0.96
SMC4-219ENST00000487747 GTF3C3Q9Y5Q9 886 aa9.06□□□□□ -0.96
SMC4-219ENST00000487747 ALX3O95076 343 aa9.05□□□□□ -0.96
SMC4-219ENST00000487747 H2AFB1P0C5Y9 115 aa9.05□□□□□ -0.96
SMC4-219ENST00000487747 H2AFB2P0C5Z0 115 aa9.05□□□□□ -0.96
SMC4-219ENST00000487747 SETDB1Q15047 1291 aa9.05□□□□□ -0.96
SMC4-219ENST00000487747 C1orf115Q9H7X2 142 aa9.05□□□□□ -0.96
SMC4-219ENST00000487747 CCDC82Q8N4S0 544 aa9.04□□□□□ -0.96
SMC4-219ENST00000487747 NUDT16Q96DE0 195 aaKnown RBP9.03□□□□□ -0.96
SMC4-219ENST00000487747 RBSNQ9H1K0 784 aa9.03□□□□□ -0.96
SMC4-219ENST00000487747 FAM13BQ9NYF5 915 aa9.03□□□□□ -0.96
SMC4-219ENST00000487747 TMEM63CQ9P1W3 806 aa9.03□□□□□ -0.96
SMC4-219ENST00000487747 CARNS1A5YM72 827 aa9.02□□□□□ -0.97
SMC4-219ENST00000487747 TMEM88BA6NKF7 163 aa9.02□□□□□ -0.97
SMC4-219ENST00000487747 TTC39BQ5VTQ0 682 aaPredicted RBP9.02□□□□□ -0.97
SMC4-219ENST00000487747 TXNDC11Q6PKC3 985 aa9.02□□□□□ -0.97
SMC4-219ENST00000487747 GALNT11Q8NCW6 608 aa9.02□□□□□ -0.97
SMC4-219ENST00000487747 LACRTQ9GZZ8 138 aa9.02□□□□□ -0.97
SMC4-219ENST00000487747 RASSF4Q9H2L5 321 aa9.02□□□□□ -0.97
SMC4-219ENST00000487747 FNDC3AQ9Y2H6 1198 aaKnown RBP9.02□□□□□ -0.97
SMC4-219ENST00000487747 HYAL2Q12891 473 aa9.01□□□□□ -0.97
SMC4-219ENST00000487747 CEP135Q66GS9 1140 aa9.01□□□□□ -0.97
SMC4-219ENST00000487747 ABTB2Q8N961 1025 aa9.01□□□□□ -0.97
SMC4-219ENST00000487747 ELP3Q9H9T3 547 aa9.01□□□□□ -0.97
SMC4-219ENST00000487747 ABI2Q9NYB9 513 aaPredicted RBP9.01□□□□□ -0.97
SMC4-219ENST00000487747 CNTN3Q9P232 1028 aa9.01□□□□□ -0.97
SMC4-219ENST00000487747 A6NHS1 94 aa9□□□□□ -0.97
SMC4-219ENST00000487747 LINC01387J3KSC0 135 aa9□□□□□ -0.97
SMC4-219ENST00000487747 CDC25BP30305 580 aa9□□□□□ -0.97
SMC4-219ENST00000487747 MTMR3Q13615 1198 aa9□□□□□ -0.97
SMC4-219ENST00000487747 GGNBP2Q9H3C7 697 aa9□□□□□ -0.97
SMC4-219ENST00000487747 AKTIPQ9H8T0 292 aa9□□□□□ -0.97
SMC4-219ENST00000487747 KANSL3Q9P2N6 904 aa9□□□□□ -0.97
SMC4-219ENST00000487747 SCO2A0A1W2PP80 73 aa8.99□□□□□ -0.97
SMC4-219ENST00000487747 TM4SF5O14894 197 aa8.99□□□□□ -0.97
SMC4-219ENST00000487747 KIF4AO95239 1232 aa8.99□□□□□ -0.97
SMC4-219ENST00000487747 AGGF1Q8N302 714 aaeCLIP8.99□□□□□ -0.972e-85■■■■■ 286.7
SMC4-219ENST00000487747 CEP120Q8N960 986 aa8.99□□□□□ -0.97
SMC4-219ENST00000487747 EDEM1Q92611 657 aa8.99□□□□□ -0.97
SMC4-219ENST00000487747 PPME1Q9Y570 386 aa8.99□□□□□ -0.97
SMC4-219ENST00000487747 F8W735 103 aaPredicted RBP8.98□□□□□ -0.97
SMC4-219ENST00000487747 ACPPP15309 386 aa8.98□□□□□ -0.97
SMC4-219ENST00000487747 DZIP1LQ8IYY4 767 aaKnown RBP8.98□□□□□ -0.97
SMC4-219ENST00000487747 TMEM130Q8N3G9 435 aa8.98□□□□□ -0.97
SMC4-219ENST00000487747 HELQQ8TDG4 1101 aa8.98□□□□□ -0.97
SMC4-219ENST00000487747 GTF3C2Q8WUA4 911 aaPredicted RBP8.98□□□□□ -0.97
SMC4-219ENST00000487747 SPACA7Q96KW9 195 aa8.98□□□□□ -0.97
SMC4-219ENST00000487747 SH2B1Q9NRF2 756 aaPredicted RBP8.98□□□□□ -0.97
SMC4-219ENST00000487747 KCNK4Q9NYG8 393 aa8.98□□□□□ -0.97
SMC4-219ENST00000487747 WISP1O95388 367 aa8.97□□□□□ -0.97
SMC4-219ENST00000487747 MPSTP25325 297 aa8.97□□□□□ -0.97
SMC4-219ENST00000487747 SSFA2P28290 1259 aa8.97□□□□□ -0.97
SMC4-219ENST00000487747 DNM1Q05193 864 aaKnown RBP8.97□□□□□ -0.97
SMC4-219ENST00000487747 PDE12Q6L8Q7 609 aaKnown RBP8.97□□□□□ -0.97
SMC4-219ENST00000487747 ZNF438Q7Z4V0 828 aa8.97□□□□□ -0.97
SMC4-219ENST00000487747 PBX4Q9BYU1 374 aa8.97□□□□□ -0.97
SMC4-219ENST00000487747 MRPL18Q9H0U6 180 aaKnown RBP8.97□□□□□ -0.97
SMC4-219ENST00000487747 PHLDB3Q6NSJ2 640 aa8.96□□□□□ -0.98
SMC4-219ENST00000487747 NCAPG2Q86XI2 1143 aa8.96□□□□□ -0.98
SMC4-219ENST00000487747 C1orf127Q8N9H9 656 aa8.96□□□□□ -0.98
SMC4-219ENST00000487747 POP1Q99575 1024 aaKnown RBP8.96□□□□□ -0.98
SMC4-219ENST00000487747 CARD10Q9BWT7 1032 aa8.96□□□□□ -0.98
SMC4-219ENST00000487747 TRPA1O75762 1119 aa8.95□□□□□ -0.98
SMC4-219ENST00000487747 SMNDC1O75940 238 aaKnown RBP eCLIP8.95□□□□□ -0.982e-16■■■■■ 67.6
SMC4-219ENST00000487747 PDGFAP04085 211 aa8.95□□□□□ -0.98
SMC4-219ENST00000487747 EPHA1P21709 976 aa8.95□□□□□ -0.98
SMC4-219ENST00000487747 CDC27P30260 824 aa8.95□□□□□ -0.98
SMC4-219ENST00000487747 EIF1AXP47813 144 aaKnown RBP8.95□□□□□ -0.98
SMC4-219ENST00000487747 ARTNQ5T4W7 220 aa8.95□□□□□ -0.98
SMC4-219ENST00000487747 PRR23CQ6ZRP0 262 aa8.95□□□□□ -0.98
SMC4-219ENST00000487747 NOM1Q5C9Z4 860 aaKnown RBP8.94□□□□□ -0.98
SMC4-219ENST00000487747 MAP4K3Q8IVH8 894 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms