RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 TRPM4Q8TD43 1214 aa31.49■■■□□ 2.63
LIME1-206ENST00000487026 CST9Q5W186 159 aa31.48■■■□□ 2.63
LIME1-206ENST00000487026 WDR63Q8IWG1 891 aa31.48■■■□□ 2.63
LIME1-206ENST00000487026 ZC3H12CQ9C0D7 883 aaKnown RBP31.48■■■□□ 2.63
LIME1-206ENST00000487026 PODXL2Q9NZ53 605 aa31.48■■■□□ 2.63
LIME1-206ENST00000487026 NEURL1BA8MQ27 555 aa31.47■■■□□ 2.63
LIME1-206ENST00000487026 UFL1O94874 794 aa31.47■■■□□ 2.63
LIME1-206ENST00000487026 MICALL2Q8IY33 904 aa31.47■■■□□ 2.63
LIME1-206ENST00000487026 H7C1D1 291 aa31.46■■■□□ 2.63
LIME1-206ENST00000487026 CTSWP56202 376 aa31.46■■■□□ 2.63
LIME1-206ENST00000487026 ANKRD18AQ8IVF6 992 aa31.46■■■□□ 2.63
LIME1-206ENST00000487026 FAM9BQ8IZU0 186 aa31.46■■■□□ 2.63
LIME1-206ENST00000487026 GLIS2Q9BZE0 524 aaPredicted RBP31.46■■■□□ 2.63
LIME1-206ENST00000487026 GGA1Q9UJY5 639 aa31.46■■■□□ 2.63
LIME1-206ENST00000487026 VAMP4O75379 141 aa31.45■■■□□ 2.63
LIME1-206ENST00000487026 EXOSC9Q06265 439 aaKnown RBP31.45■■■□□ 2.63
LIME1-206ENST00000487026 FLIIQ13045 1269 aa31.45■■■□□ 2.63
LIME1-206ENST00000487026 TTLL11Q8NHH1 800 aa31.45■■■□□ 2.63
LIME1-206ENST00000487026 PGAP2Q9UHJ9 254 aa31.45■■■□□ 2.63
LIME1-206ENST00000487026 RTL9Q8NET4 1388 aa31.44■■■□□ 2.62
LIME1-206ENST00000487026 SAMD7Q7Z3H4 446 aa31.44■■■□□ 2.62
LIME1-206ENST00000487026 SPINK5Q9NQ38 1064 aaPredicted RBP31.44■■■□□ 2.62
LIME1-206ENST00000487026 FOXN1O15353 648 aa31.43■■■□□ 2.62
LIME1-206ENST00000487026 UBE3BQ7Z3V4 1068 aa31.43■■■□□ 2.62
LIME1-206ENST00000487026 TNS4Q8IZW8 715 aa31.43■■■□□ 2.62
LIME1-206ENST00000487026 DPF2Q92785 391 aa31.43■■■□□ 2.62
LIME1-206ENST00000487026 GREM2Q9H772 168 aa31.43■■■□□ 2.62
LIME1-206ENST00000487026 WDR33Q9C0J8 1336 aaKnown RBP31.43■■■□□ 2.62
LIME1-206ENST00000487026 G3V3G9 751 aa31.42■■■□□ 2.62
LIME1-206ENST00000487026 H7C1W4 665 aa31.42■■■□□ 2.62
LIME1-206ENST00000487026 FKBP5Q13451 457 aaPredicted RBP31.42■■■□□ 2.62
LIME1-206ENST00000487026 DCAF8Q5TAQ9 597 aa31.42■■■□□ 2.62
LIME1-206ENST00000487026 WTIPA6NIX2 430 aaPredicted RBP31.41■■■□□ 2.62
LIME1-206ENST00000487026 TBC1D10BQ4KMP7 808 aaPredicted RBP31.41■■■□□ 2.62
LIME1-206ENST00000487026 PAXIP1Q6ZW49 1069 aaPredicted RBP31.41■■■□□ 2.62
LIME1-206ENST00000487026 ZC3H15Q8WU90 426 aaKnown RBP31.41■■■□□ 2.62
LIME1-206ENST00000487026 CELF2O95319 508 aaKnown RBP31.4■■■□□ 2.62
LIME1-206ENST00000487026 EGFRP00533 1210 aa31.4■■■□□ 2.62
LIME1-206ENST00000487026 GCKRQ14397 625 aa31.4■■■□□ 2.62
LIME1-206ENST00000487026 CDC5LQ99459 802 aaKnown RBP31.4■■■□□ 2.62
LIME1-206ENST00000487026 GRM1Q13255 1194 aa31.39■■■□□ 2.62
LIME1-206ENST00000487026 RBM26Q5T8P6 1007 aaKnown RBP31.39■■■□□ 2.62
LIME1-206ENST00000487026 DNAAF4Q8WXU2 420 aa31.39■■■□□ 2.62
LIME1-206ENST00000487026 XDHP47989 1333 aa31.39■■■□□ 2.62
LIME1-206ENST00000487026 TRPM7Q96QT4 1865 aa31.38■■■□□ 2.61
LIME1-206ENST00000487026 DLK2Q6UY11 383 aa31.38■■■□□ 2.61
LIME1-206ENST00000487026 WBP1LQ9NX94 342 aa31.38■■■□□ 2.61
LIME1-206ENST00000487026 VIL1P09327 827 aaKnown RBP31.37■■■□□ 2.61
LIME1-206ENST00000487026 RPS12P25398 132 aaKnown RBP31.37■■■□□ 2.61
LIME1-206ENST00000487026 CYP4F22Q6NT55 531 aa31.37■■■□□ 2.61
LIME1-206ENST00000487026 CDC37L1Q7L3B6 337 aa31.37■■■□□ 2.61
LIME1-206ENST00000487026 USP48Q86UV5 1035 aa31.37■■■□□ 2.61
LIME1-206ENST00000487026 AIDAQ96BJ3 306 aa31.37■■■□□ 2.61
LIME1-206ENST00000487026 ZNF408Q9H9D4 720 aa31.37■■■□□ 2.61
LIME1-206ENST00000487026 MINPP1Q9UNW1 487 aa31.37■■■□□ 2.61
LIME1-206ENST00000487026 TLL2Q9Y6L7 1015 aa31.37■■■□□ 2.61
LIME1-206ENST00000487026 SCN9AQ15858 1988 aa31.36■■■□□ 2.61
LIME1-206ENST00000487026 ATP2B4P23634 1241 aa31.36■■■□□ 2.61
LIME1-206ENST00000487026 CAPNS2Q96L46 248 aa31.36■■■□□ 2.61
LIME1-206ENST00000487026 BSDC1Q9NW68 430 aaPredicted RBP31.36■■■□□ 2.61
LIME1-206ENST00000487026 CAPN15O75808 1086 aa31.34■■■□□ 2.61
LIME1-206ENST00000487026 CASP7P55210 303 aa31.34■■■□□ 2.61
LIME1-206ENST00000487026 LINS1Q8NG48 757 aa31.34■■■□□ 2.61
LIME1-206ENST00000487026 F6X3S4 739 aa31.33■■■□□ 2.61
LIME1-206ENST00000487026 MYH16Q9H6N6 1097 aa31.33■■■□□ 2.61
LIME1-206ENST00000487026 MYH3P11055 1940 aa31.33■■■□□ 2.61
LIME1-206ENST00000487026 CTCFP49711 727 aaPredicted RBP31.32■■■□□ 2.6
LIME1-206ENST00000487026 SAPCD2Q86UD0 394 aa31.32■■■□□ 2.6
LIME1-206ENST00000487026 PLA2G12BQ9BX93 195 aa31.32■■■□□ 2.6
LIME1-206ENST00000487026 ECE1P42892 770 aa31.31■■■□□ 2.6
LIME1-206ENST00000487026 SPEF2Q9C093 1822 aa31.31■■■□□ 2.6
LIME1-206ENST00000487026 ITGA6P23229 1130 aa31.3■■■□□ 2.6
LIME1-206ENST00000487026 MAP2K1Q02750 393 aaPredicted RBP31.3■■■□□ 2.6
LIME1-206ENST00000487026 FAM161AQ3B820 660 aa31.3■■■□□ 2.6
LIME1-206ENST00000487026 RSBN1LQ6PCB5 846 aaPredicted RBP31.3■■■□□ 2.6
LIME1-206ENST00000487026 AOC2O75106 756 aa31.29■■■□□ 2.6
LIME1-206ENST00000487026 IGHMBP2P38935 993 aaKnown RBP31.29■■■□□ 2.6
LIME1-206ENST00000487026 CCT4P50991 539 aaKnown RBP31.29■■■□□ 2.6
LIME1-206ENST00000487026 KIF4BQ2VIQ3 1234 aa31.29■■■□□ 2.6
LIME1-206ENST00000487026 CSF1RP07333 972 aa31.28■■■□□ 2.6
LIME1-206ENST00000487026 LBX1P52954 281 aa31.28■■■□□ 2.6
LIME1-206ENST00000487026 KRT26Q7Z3Y9 468 aa31.28■■■□□ 2.6
LIME1-206ENST00000487026 CACNA1FO60840 1977 aa31.28■■■□□ 2.6
LIME1-206ENST00000487026 ASTN2O75129 1339 aaPredicted RBP31.27■■■□□ 2.6
LIME1-206ENST00000487026 ADM5C9JUS6 153 aa31.27■■■□□ 2.6
LIME1-206ENST00000487026 BEND3Q5T5X7 828 aa31.27■■■□□ 2.6
LIME1-206ENST00000487026 PODNQ7Z5L7 613 aa31.27■■■□□ 2.6
LIME1-206ENST00000487026 AGBL3Q8NEM8 1001 aa31.27■■■□□ 2.6
LIME1-206ENST00000487026 DCPSQ96C86 337 aaKnown RBP31.27■■■□□ 2.6
LIME1-206ENST00000487026 USP17L3A6NCW0 530 aa31.26■■■□□ 2.59
LIME1-206ENST00000487026 USP17L4A6NCW7 530 aa31.26■■■□□ 2.59
LIME1-206ENST00000487026 USP17L1Q7RTZ2 530 aa31.26■■■□□ 2.59
LIME1-206ENST00000487026 PRDM10Q9NQV6 1147 aa31.26■■■□□ 2.59
LIME1-206ENST00000487026 POLR2AP24928 1970 aaKnown RBP31.26■■■□□ 2.59
LIME1-206ENST00000487026 TXNRD3Q86VQ6 643 aa31.25■■■□□ 2.59
LIME1-206ENST00000487026 MPHOSPH8Q99549 860 aa31.25■■■□□ 2.59
LIME1-206ENST00000487026 MED23Q9ULK4 1368 aa31.25■■■□□ 2.59
LIME1-206ENST00000487026 GMLQ99445 158 aa31.24■■■□□ 2.59
LIME1-206ENST00000487026 HSPA8P11142 646 aaKnown RBP31.23■■■□□ 2.59
LIME1-206ENST00000487026 ZNF280AP59817 542 aaPredicted RBP31.23■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms