RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 FILIP1Q7Z7B0 1213 aa12.79□□□□□ -0.36
HDAC6-228ENST00000486227 DBNDD2Q9BQY9 259 aa12.79□□□□□ -0.36
HDAC6-228ENST00000486227 PRM3Q9NNZ6 103 aa12.79□□□□□ -0.36
HDAC6-228ENST00000486227 STK32BQ9NY57 414 aa12.79□□□□□ -0.36
HDAC6-228ENST00000486227 CPA1P15085 419 aa12.79□□□□□ -0.36
HDAC6-228ENST00000486227 IARSP41252 1262 aaKnown RBP12.79□□□□□ -0.36
HDAC6-228ENST00000486227 SLC4A8Q2Y0W8 1093 aa12.79□□□□□ -0.36
HDAC6-228ENST00000486227 WWC2Q6AWC2 1192 aa12.79□□□□□ -0.36
HDAC6-228ENST00000486227 GTPBP4Q9BZE4 634 aaKnown RBP12.79□□□□□ -0.36
HDAC6-228ENST00000486227 CROCC2H7BZ55 1655 aa12.79□□□□□ -0.36
HDAC6-228ENST00000486227 FSD2A1L4K1 749 aa12.79□□□□□ -0.36
HDAC6-228ENST00000486227 CYP7A1P22680 504 aa12.79□□□□□ -0.36
HDAC6-228ENST00000486227 PRIM1P49642 420 aaKnown RBP12.79□□□□□ -0.36
HDAC6-228ENST00000486227 FAM98CQ17RN3 349 aaKnown RBP12.79□□□□□ -0.36
HDAC6-228ENST00000486227 SPTY2D1Q68D10 685 aaPredicted RBP12.79□□□□□ -0.36
HDAC6-228ENST00000486227 Q6ZUG5 572 aa12.79□□□□□ -0.36
HDAC6-228ENST00000486227 CLASP1Q7Z460 1538 aa12.79□□□□□ -0.36
HDAC6-228ENST00000486227 RTL1A6NKG5 1358 aa12.79□□□□□ -0.36
HDAC6-228ENST00000486227 KRT18P05783 430 aaKnown RBP12.79□□□□□ -0.36
HDAC6-228ENST00000486227 NOLC1Q14978 699 aaKnown RBP eCLIP12.79□□□□□ -0.36
HDAC6-228ENST00000486227 ZNF594Q96JF6 807 aaPredicted RBP12.79□□□□□ -0.36
HDAC6-228ENST00000486227 EYA2O00167 538 aa12.78□□□□□ -0.36
HDAC6-228ENST00000486227 SSRP1Q08945 709 aaKnown RBP12.78□□□□□ -0.36
HDAC6-228ENST00000486227 BAG3O95817 575 aa12.78□□□□□ -0.36
HDAC6-228ENST00000486227 METAP2P50579 478 aaKnown RBP eCLIP12.78□□□□□ -0.36
HDAC6-228ENST00000486227 CCDC191Q8NCU4 936 aa12.78□□□□□ -0.36
HDAC6-228ENST00000486227 KIF2AO00139 706 aaPredicted RBP12.78□□□□□ -0.36
HDAC6-228ENST00000486227 NPHP4O75161 1426 aaPredicted RBP12.77□□□□□ -0.36
HDAC6-228ENST00000486227 RNF113AO15541 343 aaKnown RBP12.77□□□□□ -0.36
HDAC6-228ENST00000486227 TTLL5Q6EMB2 1281 aa12.77□□□□□ -0.36
HDAC6-228ENST00000486227 CHST3Q7LGC8 479 aa12.77□□□□□ -0.36
HDAC6-228ENST00000486227 CATIPQ7Z7H3 387 aa12.77□□□□□ -0.36
HDAC6-228ENST00000486227 A0A1B0GUL7 405 aa12.77□□□□□ -0.36
HDAC6-228ENST00000486227 MYO1BO43795 1136 aa12.77□□□□□ -0.36
HDAC6-228ENST00000486227 TNNI3KQ59H18 835 aa12.77□□□□□ -0.36
HDAC6-228ENST00000486227 TRAPPC3LQ5T215 181 aa12.77□□□□□ -0.36
HDAC6-228ENST00000486227 CCNL1Q9UK58 526 aaPredicted RBP12.77□□□□□ -0.36
HDAC6-228ENST00000486227 FPGT-TNNI3KV9GXZ4 949 aa12.77□□□□□ -0.36
HDAC6-228ENST00000486227 GNPATO15228 680 aa12.77□□□□□ -0.37
HDAC6-228ENST00000486227 ZNF853P0CG23 659 aa12.77□□□□□ -0.37
HDAC6-228ENST00000486227 FSIP1Q8NA03 581 aa12.77□□□□□ -0.37
HDAC6-228ENST00000486227 DACH1Q9UI36 760 aa12.77□□□□□ -0.37
HDAC6-228ENST00000486227 CCDC171Q6TFL3 1326 aa12.77□□□□□ -0.37
HDAC6-228ENST00000486227 HCLS1P14317 486 aaPredicted RBP12.77□□□□□ -0.37
HDAC6-228ENST00000486227 TSPYL1Q9H0U9 437 aa12.77□□□□□ -0.37
HDAC6-228ENST00000486227 CALCOCO1Q9P1Z2 691 aa12.77□□□□□ -0.37
HDAC6-228ENST00000486227 MAGEC2Q9UBF1 373 aaPredicted RBP12.77□□□□□ -0.37
HDAC6-228ENST00000486227 SLC4A4Q9Y6R1 1079 aa12.77□□□□□ -0.37
HDAC6-228ENST00000486227 EPS15P42566 896 aa12.76□□□□□ -0.37
HDAC6-228ENST00000486227 ZHX3Q9H4I2 956 aa12.76□□□□□ -0.37
HDAC6-228ENST00000486227 CEP131Q9UPN4 1083 aa12.76□□□□□ -0.37
HDAC6-228ENST00000486227 CNPY2Q9Y2B0 182 aa12.76□□□□□ -0.37
HDAC6-228ENST00000486227 TSPY2A6NKD2 308 aa12.76□□□□□ -0.37
HDAC6-228ENST00000486227 SSBP05455 408 aaKnown RBP eCLIP12.76□□□□□ -0.37
HDAC6-228ENST00000486227 UBE2HP62256 183 aa12.76□□□□□ -0.37
HDAC6-228ENST00000486227 CCDC70Q6NSX1 233 aa12.76□□□□□ -0.37
HDAC6-228ENST00000486227 KIF24Q5T7B8 1368 aa12.76□□□□□ -0.37
HDAC6-228ENST00000486227 ABCA9Q8IUA7 1624 aa12.76□□□□□ -0.37
HDAC6-228ENST00000486227 NAP1L1P55209 391 aaKnown RBP12.76□□□□□ -0.37
HDAC6-228ENST00000486227 SLC26A6Q9BXS9 759 aa12.76□□□□□ -0.37
HDAC6-228ENST00000486227 NDUFB9Q9Y6M9 179 aa12.76□□□□□ -0.37
HDAC6-228ENST00000486227 SPHKAPQ2M3C7 1700 aa12.76□□□□□ -0.37
HDAC6-228ENST00000486227 NEURL1BA8MQ27 555 aa12.75□□□□□ -0.37
HDAC6-228ENST00000486227 ZNF76P36508 570 aa12.75□□□□□ -0.37
HDAC6-228ENST00000486227 OGFOD1Q8N543 542 aa12.75□□□□□ -0.37
HDAC6-228ENST00000486227 SSH3Q8TE77 659 aa12.75□□□□□ -0.37
HDAC6-228ENST00000486227 FAM227BQ96M60 508 aa12.75□□□□□ -0.37
HDAC6-228ENST00000486227 SPDYE4A6NLX3 237 aa12.75□□□□□ -0.37
HDAC6-228ENST00000486227 TNNT1P13805 278 aa12.75□□□□□ -0.37
HDAC6-228ENST00000486227 GSPT1P15170 499 aaKnown RBP12.75□□□□□ -0.37
HDAC6-228ENST00000486227 ITGA6P23229 1130 aa12.75□□□□□ -0.37
HDAC6-228ENST00000486227 ZNF445P59923 1031 aa12.75□□□□□ -0.37
HDAC6-228ENST00000486227 CCDC129Q6ZRS4 1044 aa12.75□□□□□ -0.37
HDAC6-228ENST00000486227 ERICH4A6NGS2 130 aa12.75□□□□□ -0.37
HDAC6-228ENST00000486227 SGSM2O43147 1006 aa12.75□□□□□ -0.37
HDAC6-228ENST00000486227 PTPN14Q15678 1187 aa12.75□□□□□ -0.37
HDAC6-228ENST00000486227 BEND3Q5T5X7 828 aa12.75□□□□□ -0.37
HDAC6-228ENST00000486227 LEKR1Q6ZMV7 388 aa12.75□□□□□ -0.37
HDAC6-228ENST00000486227 DDX19AQ9NUU7 478 aaKnown RBP12.75□□□□□ -0.37
HDAC6-228ENST00000486227 STIM1Q13586 685 aa12.74□□□□□ -0.37
HDAC6-228ENST00000486227 SH3TC1Q8TE82 1336 aa12.74□□□□□ -0.37
HDAC6-228ENST00000486227 ZBTB43O43298 467 aa12.74□□□□□ -0.37
HDAC6-228ENST00000486227 PRC1O43663 620 aa12.74□□□□□ -0.37
HDAC6-228ENST00000486227 PROSER3Q2NL68 480 aa12.74□□□□□ -0.37
HDAC6-228ENST00000486227 NAA16Q6N069 864 aaPredicted RBP12.74□□□□□ -0.37
HDAC6-228ENST00000486227 USP48Q86UV5 1035 aa12.74□□□□□ -0.37
HDAC6-228ENST00000486227 ZC3H12CQ9C0D7 883 aaKnown RBP12.74□□□□□ -0.37
HDAC6-228ENST00000486227 SEC63Q9UGP8 760 aaKnown RBP12.74□□□□□ -0.37
HDAC6-228ENST00000486227 HDAC9Q9UKV0 1011 aa12.74□□□□□ -0.37
HDAC6-228ENST00000486227 RAD50Q92878 1312 aa12.74□□□□□ -0.37
HDAC6-228ENST00000486227 ERVV-2B6SEH9 535 aa12.74□□□□□ -0.37
HDAC6-228ENST00000486227 NLRP5P59047 1200 aa12.74□□□□□ -0.37
HDAC6-228ENST00000486227 PDE4BQ07343 736 aa12.74□□□□□ -0.37
HDAC6-228ENST00000486227 WTAPQ15007 396 aa12.74□□□□□ -0.37
HDAC6-228ENST00000486227 CRNKL1Q9BZJ0 848 aaKnown RBP12.74□□□□□ -0.37
HDAC6-228ENST00000486227 ANO10Q9NW15 660 aa12.74□□□□□ -0.37
HDAC6-228ENST00000486227 BAG6P46379 1132 aa12.74□□□□□ -0.37
HDAC6-228ENST00000486227 DNM1Q05193 864 aaKnown RBP12.74□□□□□ -0.37
HDAC6-228ENST00000486227 WDR78Q5VTH9 848 aa12.74□□□□□ -0.37
HDAC6-228ENST00000486227 MIGA1Q8NAN2 632 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms