RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 USP44Q9H0E7 712 aa19.67■□□□□ 0.74
HMGA1-206ENST00000478214 GGA1Q9UJY5 639 aa19.67■□□□□ 0.74
HMGA1-206ENST00000478214 ZNRF3Q9ULT6 936 aa19.67■□□□□ 0.74
HMGA1-206ENST00000478214 GJA3Q9Y6H8 435 aa19.67■□□□□ 0.74
HMGA1-206ENST00000478214 WDR90Q96KV7 1748 aa19.66■□□□□ 0.74
HMGA1-206ENST00000478214 ANKRD18BA2A2Z9 1011 aa19.66■□□□□ 0.74
HMGA1-206ENST00000478214 IFIT5Q13325 482 aaKnown RBP19.66■□□□□ 0.74
HMGA1-206ENST00000478214 GPC2Q8N158 579 aa19.66■□□□□ 0.74
HMGA1-206ENST00000478214 EYA3Q99504 573 aa19.66■□□□□ 0.74
HMGA1-206ENST00000478214 XDHP47989 1333 aa19.66■□□□□ 0.74
HMGA1-206ENST00000478214 CCT4P50991 539 aaKnown RBP19.65■□□□□ 0.74
HMGA1-206ENST00000478214 RBM46Q8TBY0 533 aaKnown RBP19.65■□□□□ 0.74
HMGA1-206ENST00000478214 ARHGAP45Q92619 1136 aa19.65■□□□□ 0.74
HMGA1-206ENST00000478214 MPHOSPH8Q99549 860 aa19.65■□□□□ 0.74
HMGA1-206ENST00000478214 LTBP1Q14766 1721 aa19.65■□□□□ 0.74
HMGA1-206ENST00000478214 WTIPA6NIX2 430 aaPredicted RBP19.64■□□□□ 0.73
HMGA1-206ENST00000478214 CXCL9Q07325 125 aa19.64■□□□□ 0.73
HMGA1-206ENST00000478214 FRAT1Q92837 279 aaPredicted RBP19.64■□□□□ 0.73
HMGA1-206ENST00000478214 BICC1Q9H694 974 aaKnown RBP19.64■□□□□ 0.73
HMGA1-206ENST00000478214 DBNDD1Q9H9R9 158 aa19.64■□□□□ 0.73
HMGA1-206ENST00000478214 IQCA1LA6NCM1 817 aa19.63■□□□□ 0.73
HMGA1-206ENST00000478214 YDJCA8MPS7 323 aa19.63■□□□□ 0.73
HMGA1-206ENST00000478214 RAD17O75943 681 aa19.63■□□□□ 0.73
HMGA1-206ENST00000478214 ATP2B4P23634 1241 aa19.63■□□□□ 0.73
HMGA1-206ENST00000478214 DOK7Q18PE1 504 aa19.63■□□□□ 0.73
HMGA1-206ENST00000478214 CCDC57Q2TAC2 916 aa19.63■□□□□ 0.73
HMGA1-206ENST00000478214 ZNF594Q96JF6 807 aaPredicted RBP19.63■□□□□ 0.73
HMGA1-206ENST00000478214 ZC3H12CQ9C0D7 883 aaKnown RBP19.63■□□□□ 0.73
HMGA1-206ENST00000478214 TNNQ9UQP3 1299 aa19.63■□□□□ 0.73
HMGA1-206ENST00000478214 IPO8O15397 1037 aaKnown RBP19.62■□□□□ 0.73
HMGA1-206ENST00000478214 TRIM27P14373 513 aa19.62■□□□□ 0.73
HMGA1-206ENST00000478214 ANKRD44Q8N8A2 993 aa19.62■□□□□ 0.73
HMGA1-206ENST00000478214 TAF1DQ9H5J8 278 aaPredicted RBP19.62■□□□□ 0.73
HMGA1-206ENST00000478214 HACL1Q9UJ83 578 aa19.62■□□□□ 0.73
HMGA1-206ENST00000478214 RABL6Q3YEC7 729 aaPredicted RBP19.61■□□□□ 0.73
HMGA1-206ENST00000478214 TAF7LQ5H9L4 462 aa19.61■□□□□ 0.73
HMGA1-206ENST00000478214 CIAPIN1Q6FI81 312 aa19.61■□□□□ 0.73
HMGA1-206ENST00000478214 ECE2O60344 883 aa19.6■□□□□ 0.73
HMGA1-206ENST00000478214 POTEIP0CG38 1075 aa19.6■□□□□ 0.73
HMGA1-206ENST00000478214 POTEJP0CG39 1038 aa19.6■□□□□ 0.73
HMGA1-206ENST00000478214 SCNN1DP51172 638 aa19.6■□□□□ 0.73
HMGA1-206ENST00000478214 CHRNDQ07001 517 aa19.6■□□□□ 0.73
HMGA1-206ENST00000478214 ATF7IPQ6VMQ6 1270 aa19.6■□□□□ 0.73
HMGA1-206ENST00000478214 ANKRD2Q9GZV1 360 aa19.6■□□□□ 0.73
HMGA1-206ENST00000478214 SPEF2Q9C093 1822 aa19.6■□□□□ 0.73
HMGA1-206ENST00000478214 EPHX2P34913 555 aa19.59■□□□□ 0.73
HMGA1-206ENST00000478214 TNIP1Q15025 636 aa19.59■□□□□ 0.73
HMGA1-206ENST00000478214 INTS3Q68E01 1043 aaKnown RBP19.59■□□□□ 0.73
HMGA1-206ENST00000478214 LDHAL6AQ6ZMR3 332 aa19.59■□□□□ 0.73
HMGA1-206ENST00000478214 SMC1BQ8NDV3 1235 aa19.59■□□□□ 0.73
HMGA1-206ENST00000478214 HELBQ8NG08 1087 aaPredicted RBP19.59■□□□□ 0.73
HMGA1-206ENST00000478214 CLUAP1Q96AJ1 413 aa19.59■□□□□ 0.73
HMGA1-206ENST00000478214 KCNQ5Q9NR82 932 aa19.59■□□□□ 0.73
HMGA1-206ENST00000478214 LEMD3Q9Y2U8 911 aa19.59■□□□□ 0.73
HMGA1-206ENST00000478214 G3V3G9 751 aa19.58■□□□□ 0.72
HMGA1-206ENST00000478214 UBTFL1P0CB47 393 aaPredicted RBP19.58■□□□□ 0.72
HMGA1-206ENST00000478214 EPS15P42566 896 aa19.58■□□□□ 0.72
HMGA1-206ENST00000478214 GMPSP49915 693 aaPredicted RBP19.58■□□□□ 0.72
HMGA1-206ENST00000478214 FSTL1Q12841 308 aa19.58■□□□□ 0.72
HMGA1-206ENST00000478214 DCAF8Q5TAQ9 597 aa19.58■□□□□ 0.72
HMGA1-206ENST00000478214 CNNM1Q9NRU3 951 aa19.58■□□□□ 0.72
HMGA1-206ENST00000478214 ZNF804BA4D1E1 1349 aa19.57■□□□□ 0.72
HMGA1-206ENST00000478214 SNAP23O00161 211 aa19.57■□□□□ 0.72
HMGA1-206ENST00000478214 PSMD14O00487 310 aa19.57■□□□□ 0.72
HMGA1-206ENST00000478214 TAF5LO75529 589 aa19.57■□□□□ 0.72
HMGA1-206ENST00000478214 HSPA6P17066 643 aa19.57■□□□□ 0.72
HMGA1-206ENST00000478214 LMOD1P29536 600 aaPredicted RBP19.57■□□□□ 0.72
HMGA1-206ENST00000478214 EAPPQ56P03 285 aaPredicted RBP19.57■□□□□ 0.72
HMGA1-206ENST00000478214 ZKSCAN2Q63HK3 967 aa19.57■□□□□ 0.72
HMGA1-206ENST00000478214 MEIS3Q99687 375 aa19.57■□□□□ 0.72
HMGA1-206ENST00000478214 MED23Q9ULK4 1368 aa19.57■□□□□ 0.72
HMGA1-206ENST00000478214 KLRK1P26718 216 aa19.56■□□□□ 0.72
HMGA1-206ENST00000478214 TXNRD3Q86VQ6 643 aa19.56■□□□□ 0.72
HMGA1-206ENST00000478214 PUS3Q9BZE2 481 aaKnown RBP19.56■□□□□ 0.72
HMGA1-206ENST00000478214 GPRC5DQ9NZD1 345 aa19.56■□□□□ 0.72
HMGA1-206ENST00000478214 SCN4AP35499 1836 aa19.55■□□□□ 0.72
HMGA1-206ENST00000478214 KCNJ4P48050 445 aa19.55■□□□□ 0.72
HMGA1-206ENST00000478214 ZBTB12Q9Y330 459 aaPredicted RBP19.55■□□□□ 0.72
HMGA1-206ENST00000478214 LRRFIP2Q9Y608 721 aaKnown RBP19.55■□□□□ 0.72
HMGA1-206ENST00000478214 PLIN1O60240 522 aa19.54■□□□□ 0.72
HMGA1-206ENST00000478214 CHADLQ6NUI6 762 aa19.54■□□□□ 0.72
HMGA1-206ENST00000478214 PNMA8AQ86V59 439 aaPredicted RBP19.54■□□□□ 0.72
HMGA1-206ENST00000478214 LDHDQ86WU2 507 aa19.54■□□□□ 0.72
HMGA1-206ENST00000478214 KLHDC4Q8TBB5 520 aa19.54■□□□□ 0.72
HMGA1-206ENST00000478214 PODNQ7Z5L7 613 aa19.53■□□□□ 0.72
HMGA1-206ENST00000478214 TMEM57Q8N5G2 664 aa19.53■□□□□ 0.72
HMGA1-206ENST00000478214 CLEC11AQ9Y240 323 aa19.53■□□□□ 0.72
HMGA1-206ENST00000478214 RIPOR2Q9Y4F9 1068 aa19.53■□□□□ 0.72
HMGA1-206ENST00000478214 SHTN1A0MZ66 631 aa19.52■□□□□ 0.72
HMGA1-206ENST00000478214 GNAI3P08754 354 aa19.52■□□□□ 0.72
HMGA1-206ENST00000478214 RFX5P48382 616 aaPredicted RBP19.52■□□□□ 0.72
HMGA1-206ENST00000478214 LRRC24Q50LG9 513 aa19.52■□□□□ 0.72
HMGA1-206ENST00000478214 IRS2Q9Y4H2 1338 aa19.51■□□□□ 0.71
HMGA1-206ENST00000478214 VIL1P09327 827 aaKnown RBP19.51■□□□□ 0.71
HMGA1-206ENST00000478214 DPF2Q92785 391 aa19.51■□□□□ 0.71
HMGA1-206ENST00000478214 COA1Q9GZY4 146 aa19.51■□□□□ 0.71
HMGA1-206ENST00000478214 ADARB2Q9NS39 739 aaKnown RBP19.51■□□□□ 0.71
HMGA1-206ENST00000478214 CNOT7Q9UIV1 285 aaKnown RBP19.51■□□□□ 0.71
HMGA1-206ENST00000478214 HDAC5Q9UQL6 1122 aa19.51■□□□□ 0.71
HMGA1-206ENST00000478214 C15orf52Q6ZUT6 534 aaKnown RBP19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms