RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 CNTNAP3BQ96NU0 1288 aa9.68□□□□□ -0.86
VPS50-212ENST00000476413 CNTNAP3Q9BZ76 1288 aa9.68□□□□□ -0.86
VPS50-212ENST00000476413 FAM8A1Q9UBU6 413 aa9.68□□□□□ -0.86
VPS50-212ENST00000476413 USP31Q70CQ4 1352 aa9.67□□□□□ -0.86
VPS50-212ENST00000476413 POTECB2RU33 542 aa9.67□□□□□ -0.86
VPS50-212ENST00000476413 ACPPP15309 386 aa9.67□□□□□ -0.86
VPS50-212ENST00000476413 NANOS1Q8WY41 292 aaKnown RBP9.67□□□□□ -0.86
VPS50-212ENST00000476413 C8orf37Q96NL8 207 aa9.67□□□□□ -0.86
VPS50-212ENST00000476413 PNMA5Q96PV4 448 aa9.67□□□□□ -0.86
VPS50-212ENST00000476413 SRCIN1Q9C0H9 1055 aa9.67□□□□□ -0.86
VPS50-212ENST00000476413 PHF20L1A8MW92 1017 aa9.66□□□□□ -0.86
VPS50-212ENST00000476413 C2CD2LO14523 706 aa9.66□□□□□ -0.86
VPS50-212ENST00000476413 GADD45BO75293 160 aaPredicted RBP9.66□□□□□ -0.86
VPS50-212ENST00000476413 USP17L7P0C7H9 530 aa9.66□□□□□ -0.86
VPS50-212ENST00000476413 EDN3P14138 238 aa9.66□□□□□ -0.86
VPS50-212ENST00000476413 ZNF76P36508 570 aa9.66□□□□□ -0.86
VPS50-212ENST00000476413 MEI1Q5TIA1 1274 aa9.66□□□□□ -0.86
VPS50-212ENST00000476413 NT5DC4Q86YG4 428 aa9.66□□□□□ -0.86
VPS50-212ENST00000476413 VWA5B2Q8N398 1253 aa9.66□□□□□ -0.86
VPS50-212ENST00000476413 C3orf58Q8NDZ4 430 aa9.66□□□□□ -0.86
VPS50-212ENST00000476413 RNF34Q969K3 372 aa9.66□□□□□ -0.86
VPS50-212ENST00000476413 ZBTB42B2RXF5 422 aa9.65□□□□□ -0.86
VPS50-212ENST00000476413 C11orf95C9JLR9 678 aaPredicted RBP9.65□□□□□ -0.86
VPS50-212ENST00000476413 PSAPP07602 524 aa9.65□□□□□ -0.86
VPS50-212ENST00000476413 ERCC5P28715 1186 aaPredicted RBP9.65□□□□□ -0.86
VPS50-212ENST00000476413 DHX32Q7L7V1 743 aaKnown RBP9.65□□□□□ -0.86
VPS50-212ENST00000476413 PHF24Q9UPV7 400 aa9.65□□□□□ -0.86
VPS50-212ENST00000476413 CDC14CA4D256 554 aa9.64□□□□□ -0.87
VPS50-212ENST00000476413 PLAURQ03405 335 aa9.64□□□□□ -0.87
VPS50-212ENST00000476413 PRPF40BQ6NWY9 871 aaKnown RBP9.64□□□□□ -0.87
VPS50-212ENST00000476413 CEP120Q8N960 986 aa9.64□□□□□ -0.87
VPS50-212ENST00000476413 TCF12Q99081 682 aa9.64□□□□□ -0.87
VPS50-212ENST00000476413 ZKSCAN3Q9BRR0 538 aa9.64□□□□□ -0.87
VPS50-212ENST00000476413 NFKBIEO00221 500 aa9.63□□□□□ -0.87
VPS50-212ENST00000476413 NRLP54845 237 aa9.63□□□□□ -0.87
VPS50-212ENST00000476413 ZC3H6P61129 1189 aaKnown RBP9.63□□□□□ -0.87
VPS50-212ENST00000476413 PTPN12Q05209 780 aaKnown RBP9.63□□□□□ -0.87
VPS50-212ENST00000476413 Q6ZNB5 142 aa9.63□□□□□ -0.87
VPS50-212ENST00000476413 TRPM4Q8TD43 1214 aa9.63□□□□□ -0.87
VPS50-212ENST00000476413 NSUN5Q96P11 429 aaKnown RBP9.63□□□□□ -0.87
VPS50-212ENST00000476413 EHD4Q9H223 541 aa9.63□□□□□ -0.87
VPS50-212ENST00000476413 ABCB6Q9NP58 842 aa9.63□□□□□ -0.87
VPS50-212ENST00000476413 ST13P50502 369 aaKnown RBP9.62□□□□□ -0.87
VPS50-212ENST00000476413 GPLD1P80108 840 aa9.62□□□□□ -0.87
VPS50-212ENST00000476413 HYAL2Q12891 473 aa9.62□□□□□ -0.87
VPS50-212ENST00000476413 NCAPG2Q86XI2 1143 aa9.62□□□□□ -0.87
VPS50-212ENST00000476413 DZANK1Q9NVP4 752 aa9.62□□□□□ -0.87
VPS50-212ENST00000476413 TRPA1O75762 1119 aa9.61□□□□□ -0.87
VPS50-212ENST00000476413 GAS6Q14393 721 aa9.61□□□□□ -0.87
VPS50-212ENST00000476413 TAF1CQ15572 869 aaPredicted RBP9.61□□□□□ -0.87
VPS50-212ENST00000476413 ZNF468Q5VIY5 522 aaPredicted RBP9.61□□□□□ -0.87
VPS50-212ENST00000476413 SV2AQ7L0J3 742 aa9.61□□□□□ -0.87
VPS50-212ENST00000476413 CCNJLQ8IV13 435 aa9.61□□□□□ -0.87
VPS50-212ENST00000476413 TRERF1Q96PN7 1200 aa9.61□□□□□ -0.87
VPS50-212ENST00000476413 HHIPQ96QV1 700 aa9.61□□□□□ -0.87
VPS50-212ENST00000476413 OSMRQ99650 979 aa9.61□□□□□ -0.87
VPS50-212ENST00000476413 TRAK1Q9UPV9 953 aa9.61□□□□□ -0.87
VPS50-212ENST00000476413 GSTT1P30711 240 aa9.6□□□□□ -0.87
VPS50-212ENST00000476413 SYT9Q86SS6 491 aa9.6□□□□□ -0.87
VPS50-212ENST00000476413 LIN7BQ9HAP6 207 aa9.6□□□□□ -0.87
VPS50-212ENST00000476413 MAP3K10Q02779 954 aa9.59□□□□□ -0.87
VPS50-212ENST00000476413 MLLT1Q03111 559 aaPredicted RBP9.59□□□□□ -0.87
VPS50-212ENST00000476413 NAALADL2Q58DX5 795 aa9.59□□□□□ -0.87
VPS50-212ENST00000476413 FOXR1Q6PIV2 292 aa9.59□□□□□ -0.87
VPS50-212ENST00000476413 TGIF2Q9GZN2 237 aa9.59□□□□□ -0.87
VPS50-212ENST00000476413 KLF15Q9UIH9 416 aa9.59□□□□□ -0.87
VPS50-212ENST00000476413 LOC102724428A0A0B4J2F2 783 aa9.58□□□□□ -0.88
VPS50-212ENST00000476413 TMEM238LA0A1B0GVL6 79 aa9.58□□□□□ -0.88
VPS50-212ENST00000476413 J3QW42 95 aa9.58□□□□□ -0.88
VPS50-212ENST00000476413 SIN3BO75182 1162 aa9.58□□□□□ -0.88
VPS50-212ENST00000476413 GRIA4P48058 902 aa9.58□□□□□ -0.88
VPS50-212ENST00000476413 FCGRTP55899 365 aa9.58□□□□□ -0.88
VPS50-212ENST00000476413 SIK1P57059 783 aa9.58□□□□□ -0.88
VPS50-212ENST00000476413 RACK1P63244 317 aaKnown RBP9.58□□□□□ -0.88
VPS50-212ENST00000476413 ZNF394Q53GI3 561 aa9.58□□□□□ -0.88
VPS50-212ENST00000476413 ANKRD24Q8TF21 1146 aa9.58□□□□□ -0.88
VPS50-212ENST00000476413 MDFIQ99750 246 aa9.58□□□□□ -0.88
VPS50-212ENST00000476413 OXCT2Q9BYC2 517 aaPredicted RBP9.58□□□□□ -0.88
VPS50-212ENST00000476413 BHLHE41Q9C0J9 482 aaPredicted RBP9.58□□□□□ -0.88
VPS50-212ENST00000476413 DNAJB12Q9NXW2 375 aaKnown RBP9.58□□□□□ -0.88
VPS50-212ENST00000476413 DDX41Q9UJV9 622 aaKnown RBP9.58□□□□□ -0.88
VPS50-212ENST00000476413 ATP11AP98196 1134 aa9.57□□□□□ -0.88
VPS50-212ENST00000476413 NEUROD1Q13562 356 aa9.57□□□□□ -0.88
VPS50-212ENST00000476413 HFE2Q6ZVN8 426 aa9.57□□□□□ -0.88
VPS50-212ENST00000476413 ERMP1Q7Z2K6 904 aa9.57□□□□□ -0.88
VPS50-212ENST00000476413 GPR161Q8N6U8 529 aaKnown RBP9.57□□□□□ -0.88
VPS50-212ENST00000476413 TMEM102Q8N9M5 508 aaPredicted RBP9.57□□□□□ -0.88
VPS50-212ENST00000476413 TNFRSF25Q93038 417 aa9.57□□□□□ -0.88
VPS50-212ENST00000476413 TINF2Q9BSI4 451 aa9.57□□□□□ -0.88
VPS50-212ENST00000476413 SRA1Q9HD15 236 aaKnown RBP9.57□□□□□ -0.88
VPS50-212ENST00000476413 PRR12Q9ULL5 1215 aa9.57□□□□□ -0.88
VPS50-212ENST00000476413 METTL12A8MUP2 240 aa9.56□□□□□ -0.88
VPS50-212ENST00000476413 BMP4P12644 408 aa9.56□□□□□ -0.88
VPS50-212ENST00000476413 PCBP4P57723 403 aaKnown RBP9.56□□□□□ -0.88
VPS50-212ENST00000476413 ADAMTSL4Q6UY14 1074 aa9.56□□□□□ -0.88
VPS50-212ENST00000476413 HS2ST1Q7LGA3 356 aa9.56□□□□□ -0.88
VPS50-212ENST00000476413 NXPE3Q969Y0 559 aa9.56□□□□□ -0.88
VPS50-212ENST00000476413 RASSF4Q9H2L5 321 aa9.56□□□□□ -0.88
VPS50-212ENST00000476413 ACBD3Q9H3P7 528 aa9.56□□□□□ -0.88
VPS50-212ENST00000476413 AVENQ9NQS1 362 aaPredicted RBP9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms