RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 PHF8Q9UPP1 1060 aa7.15□□□□□ -1.27
HERC4-209ENST00000473533 MARF1Q9Y4F3 1742 aaKnown RBP7.14□□□□□ -1.27
HERC4-209ENST00000473533 ZBTB7CA1YPR0 619 aa7.14□□□□□ -1.27
HERC4-209ENST00000473533 NR1I2O75469 434 aa7.14□□□□□ -1.27
HERC4-209ENST00000473533 LTKP29376 864 aa7.14□□□□□ -1.27
HERC4-209ENST00000473533 IQCB1Q15051 598 aa7.14□□□□□ -1.27
HERC4-209ENST00000473533 ATP2B3Q16720 1220 aa7.14□□□□□ -1.27
HERC4-209ENST00000473533 BRAPQ7Z569 592 aa7.14□□□□□ -1.27
HERC4-209ENST00000473533 FILIP1Q7Z7B0 1213 aa7.14□□□□□ -1.27
HERC4-209ENST00000473533 MRPS27Q92552 414 aaKnown RBP7.14□□□□□ -1.27
HERC4-209ENST00000473533 EAF2Q96CJ1 260 aaPredicted RBP7.14□□□□□ -1.27
HERC4-209ENST00000473533 ZNF274Q96GC6 653 aaPredicted RBP7.14□□□□□ -1.27
HERC4-209ENST00000473533 BOLA2Q9H3K6 86 aa7.14□□□□□ -1.27
HERC4-209ENST00000473533 TFIP11Q9UBB9 837 aaKnown RBP7.14□□□□□ -1.27
HERC4-209ENST00000473533 SLIT3O75094 1523 aa7.14□□□□□ -1.27
HERC4-209ENST00000473533 A0A0D9SFI3 127 aa7.14□□□□□ -1.27
HERC4-209ENST00000473533 GOLGA6L9A6NEM1 432 aa7.14□□□□□ -1.27
HERC4-209ENST00000473533 U2AF2P26368 475 aaKnown RBP eCLIP7.14□□□□□ -1.274e-7■■■□□ 16.6
HERC4-209ENST00000473533 TEX35Q5T0J7 233 aa7.14□□□□□ -1.27
HERC4-209ENST00000473533 Q6ZUG5 572 aa7.14□□□□□ -1.27
HERC4-209ENST00000473533 NOL10Q9BSC4 688 aaKnown RBP7.14□□□□□ -1.27
HERC4-209ENST00000473533 CCDC69A6NI79 296 aa7.14□□□□□ -1.27
HERC4-209ENST00000473533 ATP8B1O43520 1251 aa7.14□□□□□ -1.27
HERC4-209ENST00000473533 SASH1O94885 1247 aa7.14□□□□□ -1.27
HERC4-209ENST00000473533 YEATS4O95619 227 aa7.14□□□□□ -1.27
HERC4-209ENST00000473533 SF3A1Q15459 793 aaKnown RBP7.14□□□□□ -1.27
HERC4-209ENST00000473533 NYAP1Q6ZVC0 841 aa7.14□□□□□ -1.27
HERC4-209ENST00000473533 JMYQ8N9B5 988 aa7.14□□□□□ -1.27
HERC4-209ENST00000473533 CACTINQ8WUQ7 758 aaKnown RBP7.14□□□□□ -1.27
HERC4-209ENST00000473533 SUCLG2Q96I99 432 aa7.14□□□□□ -1.27
HERC4-209ENST00000473533 SLC26A8Q96RN1 970 aa7.14□□□□□ -1.27
HERC4-209ENST00000473533 TSPYL1Q9H0U9 437 aa7.14□□□□□ -1.27
HERC4-209ENST00000473533 BICC1Q9H694 974 aaKnown RBP7.14□□□□□ -1.27
HERC4-209ENST00000473533 GPR108Q9NPR9 543 aa7.14□□□□□ -1.27
HERC4-209ENST00000473533 NFAT5O94916 1531 aa7.14□□□□□ -1.27
HERC4-209ENST00000473533 PALLDQ8WX93 1383 aa7.13□□□□□ -1.27
HERC4-209ENST00000473533 SFPQP23246 707 aaKnown RBP eCLIP7.13□□□□□ -1.27
HERC4-209ENST00000473533 SNW1Q13573 536 aaKnown RBP7.13□□□□□ -1.27
HERC4-209ENST00000473533 FCHSD1Q86WN1 690 aa7.13□□□□□ -1.27
HERC4-209ENST00000473533 CCAR2Q8N163 923 aaKnown RBP7.13□□□□□ -1.27
HERC4-209ENST00000473533 FBXL16Q8N461 479 aa7.13□□□□□ -1.27
HERC4-209ENST00000473533 ZNF592Q92610 1267 aa7.13□□□□□ -1.27
HERC4-209ENST00000473533 PGBD1Q96JS3 809 aa7.13□□□□□ -1.27
HERC4-209ENST00000473533 SDF4Q9BRK5 362 aa7.13□□□□□ -1.27
HERC4-209ENST00000473533 BCL11BQ9C0K0 894 aaPredicted RBP7.13□□□□□ -1.27
HERC4-209ENST00000473533 CCDC8Q9H0W5 538 aaPredicted RBP7.13□□□□□ -1.27
HERC4-209ENST00000473533 CALCOCO1Q9P1Z2 691 aa7.13□□□□□ -1.27
HERC4-209ENST00000473533 RGPD8O14715 1765 aaPredicted RBP7.13□□□□□ -1.27
HERC4-209ENST00000473533 ME1P48163 572 aa7.13□□□□□ -1.27
HERC4-209ENST00000473533 STK3Q13188 491 aa7.13□□□□□ -1.27
HERC4-209ENST00000473533 ADALQ6DHV7 355 aa7.13□□□□□ -1.27
HERC4-209ENST00000473533 FSIP1Q8NA03 581 aa7.13□□□□□ -1.27
HERC4-209ENST00000473533 ANKRD24Q8TF21 1146 aa7.13□□□□□ -1.27
HERC4-209ENST00000473533 HAUS7Q99871 368 aa7.13□□□□□ -1.27
HERC4-209ENST00000473533 HOOK1Q9UJC3 728 aaKnown RBP7.13□□□□□ -1.27
HERC4-209ENST00000473533 PA2G4Q9UQ80 394 aaKnown RBP7.13□□□□□ -1.27
HERC4-209ENST00000473533 SPEF2Q9C093 1822 aa7.13□□□□□ -1.27
HERC4-209ENST00000473533 MYH15Q9Y2K3 1946 aa7.13□□□□□ -1.27
HERC4-209ENST00000473533 TNNI3KQ59H18 835 aa7.13□□□□□ -1.27
HERC4-209ENST00000473533 METTL22Q9BUU2 404 aaPredicted RBP7.13□□□□□ -1.27
HERC4-209ENST00000473533 RTEL1Q9NZ71 1219 aa7.13□□□□□ -1.27
HERC4-209ENST00000473533 ZHX1Q9UKY1 873 aaPredicted RBP7.13□□□□□ -1.27
HERC4-209ENST00000473533 FPGT-TNNI3KV9GXZ4 949 aa7.13□□□□□ -1.27
HERC4-209ENST00000473533 SPDYE4A6NLX3 237 aa7.12□□□□□ -1.27
HERC4-209ENST00000473533 ZSCAN12O43309 604 aa7.12□□□□□ -1.27
HERC4-209ENST00000473533 TUBB4BP68371 445 aa7.12□□□□□ -1.27
HERC4-209ENST00000473533 LRMPQ12912 555 aa7.12□□□□□ -1.27
HERC4-209ENST00000473533 KBTBD3Q8NAB2 608 aa7.12□□□□□ -1.27
HERC4-209ENST00000473533 TSC1Q92574 1164 aa7.12□□□□□ -1.27
HERC4-209ENST00000473533 AGXT2Q9BYV1 514 aa7.12□□□□□ -1.27
HERC4-209ENST00000473533 LGR6Q9HBX8 967 aa7.12□□□□□ -1.27
HERC4-209ENST00000473533 ABCC6O95255 1503 aa7.12□□□□□ -1.27
HERC4-209ENST00000473533 PTPDC1A2A3K4 754 aa7.12□□□□□ -1.27
HERC4-209ENST00000473533 IKBKBO14920 756 aa7.12□□□□□ -1.27
HERC4-209ENST00000473533 GCKRQ14397 625 aa7.12□□□□□ -1.27
HERC4-209ENST00000473533 STK38Q15208 465 aa7.12□□□□□ -1.27
HERC4-209ENST00000473533 SYNE3Q6ZMZ3 975 aa7.12□□□□□ -1.27
HERC4-209ENST00000473533 TIGD1Q96MW7 591 aa7.12□□□□□ -1.27
HERC4-209ENST00000473533 WDR19Q8NEZ3 1342 aa7.12□□□□□ -1.27
HERC4-209ENST00000473533 NEURL1BA8MQ27 555 aa7.12□□□□□ -1.27
HERC4-209ENST00000473533 ZFYP08048 801 aaPredicted RBP7.12□□□□□ -1.27
HERC4-209ENST00000473533 NBPF6Q5VWK0 638 aa7.12□□□□□ -1.27
HERC4-209ENST00000473533 CPLX2Q6PUV4 134 aaKnown RBP7.12□□□□□ -1.27
HERC4-209ENST00000473533 NSUN7Q8NE18 718 aaKnown RBP7.12□□□□□ -1.27
HERC4-209ENST00000473533 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.12□□□□□ -1.27
HERC4-209ENST00000473533 CCDC34Q96HJ3 373 aa7.12□□□□□ -1.27
HERC4-209ENST00000473533 NBPF4Q96M43 638 aa7.12□□□□□ -1.27
HERC4-209ENST00000473533 PHLPP2Q6ZVD8 1323 aa7.11□□□□□ -1.27
HERC4-209ENST00000473533 CAMTA1Q9Y6Y1 1673 aa7.11□□□□□ -1.27
HERC4-209ENST00000473533 CDKL5O76039 1030 aa7.11□□□□□ -1.27
HERC4-209ENST00000473533 PSME1Q06323 249 aa7.11□□□□□ -1.27
HERC4-209ENST00000473533 GPS2Q13227 327 aa7.11□□□□□ -1.27
HERC4-209ENST00000473533 CWF19L2Q2TBE0 894 aaKnown RBP7.11□□□□□ -1.27
HERC4-209ENST00000473533 POLR3EQ9NVU0 708 aa7.11□□□□□ -1.27
HERC4-209ENST00000473533 NRBP1Q9UHY1 535 aa7.11□□□□□ -1.27
HERC4-209ENST00000473533 ADAMTS7Q9UKP4 1686 aa7.11□□□□□ -1.27
HERC4-209ENST00000473533 NLRP12P59046 1061 aa7.11□□□□□ -1.27
HERC4-209ENST00000473533 RABL6Q3YEC7 729 aaPredicted RBP7.11□□□□□ -1.27
HERC4-209ENST00000473533 FAM173BQ6P4H8 233 aa7.11□□□□□ -1.27
HERC4-209ENST00000473533 MPRIPQ6WCQ1 1025 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms