RNA–Protein interactions for RNA: ENST00000473345.5

MCF2L-223, Transcript of MCF.2 cell line derived transforming sequence like, human

TSL 3

Gene MCF2L, Length 399 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MCF2L-223	ENST00000473345	POLR2A	P24928	1970 aa	Known RBP	12.61	□□□□□ -0.39
MCF2L-223	ENST00000473345	C6orf229	H3BNL8	230 aa		12.61	□□□□□ -0.39
MCF2L-223	ENST00000473345	VIL1	P09327	827 aa	Known RBP	12.61	□□□□□ -0.39
MCF2L-223	ENST00000473345	KIF4B	Q2VIQ3	1234 aa		12.61	□□□□□ -0.39
MCF2L-223	ENST00000473345	ANKRD13D	Q6ZTN6	518 aa		12.61	□□□□□ -0.39
MCF2L-223	ENST00000473345	CSRNP1	Q96S65	589 aa		12.61	□□□□□ -0.39
MCF2L-223	ENST00000473345	TMX4	Q9H1E5	349 aa	Predicted RBP	12.61	□□□□□ -0.39
MCF2L-223	ENST00000473345	PHAX	Q9H814	394 aa	Known RBP	12.61	□□□□□ -0.39
MCF2L-223	ENST00000473345	LAS1L	Q9Y4W2	734 aa	Known RBP	12.61	□□□□□ -0.39
MCF2L-223	ENST00000473345	IRS4	O14654	1257 aa	Predicted RBP	12.6	□□□□□ -0.39
MCF2L-223	ENST00000473345	TRPA1	O75762	1119 aa		12.6	□□□□□ -0.39
MCF2L-223	ENST00000473345	SLC10A3	P09131	477 aa		12.6	□□□□□ -0.39
MCF2L-223	ENST00000473345	HDGFL1	Q5TGJ6	251 aa		12.6	□□□□□ -0.39
MCF2L-223	ENST00000473345	RASAL3	Q86YV0	1011 aa		12.6	□□□□□ -0.39
MCF2L-223	ENST00000473345	CDCA5	Q96FF9	252 aa		12.6	□□□□□ -0.39
MCF2L-223	ENST00000473345	GML	Q99445	158 aa		12.6	□□□□□ -0.39
MCF2L-223	ENST00000473345	ZNF280A	P59817	542 aa	Predicted RBP	12.59	□□□□□ -0.39
MCF2L-223	ENST00000473345	RPS8	P62241	208 aa	Known RBP	12.59	□□□□□ -0.39
MCF2L-223	ENST00000473345	PRAMEF18	Q5VWM3	479 aa		12.59	□□□□□ -0.39
MCF2L-223	ENST00000473345	DUSP27	Q5VZP5	1158 aa		12.59	□□□□□ -0.39
MCF2L-223	ENST00000473345	TMC4	Q7Z404	712 aa		12.59	□□□□□ -0.39
MCF2L-223	ENST00000473345	CCDC85A	Q96PX6	553 aa	Predicted RBP	12.59	□□□□□ -0.39
MCF2L-223	ENST00000473345	MXD3	Q9BW11	206 aa		12.59	□□□□□ -0.39
MCF2L-223	ENST00000473345	ZNF646	O15015	1829 aa	Predicted RBP	12.59	□□□□□ -0.39
MCF2L-223	ENST00000473345	RPS12	P25398	132 aa	Known RBP	12.58	□□□□□ -0.4
MCF2L-223	ENST00000473345	ZNF157	P51786	506 aa	Predicted RBP	12.58	□□□□□ -0.4
MCF2L-223	ENST00000473345	TRIM28	Q13263	835 aa	Known RBP	12.58	□□□□□ -0.4
MCF2L-223	ENST00000473345	ANGEL2	Q5VTE6	544 aa	Known RBP	12.58	□□□□□ -0.4
MCF2L-223	ENST00000473345	MBIP	Q9NS73	344 aa		12.58	□□□□□ -0.4
MCF2L-223	ENST00000473345	PODXL2	Q9NZ53	605 aa		12.58	□□□□□ -0.4
MCF2L-223	ENST00000473345	UFL1	O94874	794 aa		12.57	□□□□□ -0.4
MCF2L-223	ENST00000473345	ZNF853	P0CG23	659 aa		12.57	□□□□□ -0.4
MCF2L-223	ENST00000473345	SCARF1	Q14162	830 aa		12.57	□□□□□ -0.4
MCF2L-223	ENST00000473345	C2orf69	Q8N8R5	385 aa		12.57	□□□□□ -0.4
MCF2L-223	ENST00000473345	DCPS	Q96C86	337 aa	Known RBP	12.57	□□□□□ -0.4
MCF2L-223	ENST00000473345	SAGE1	Q9NXZ1	904 aa		12.57	□□□□□ -0.4
MCF2L-223	ENST00000473345	ADAMTS8	Q9UP79	889 aa		12.57	□□□□□ -0.4
MCF2L-223	ENST00000473345	ZNF609	O15014	1411 aa		12.56	□□□□□ -0.4
MCF2L-223	ENST00000473345	PNN	Q9H307	717 aa	Known RBP	12.56	□□□□□ -0.4
MCF2L-223	ENST00000473345	R3HDML	Q9H3Y0	253 aa		12.56	□□□□□ -0.4
MCF2L-223	ENST00000473345	DBF4	Q9UBU7	674 aa	Predicted RBP	12.56	□□□□□ -0.4
MCF2L-223	ENST00000473345	ELL2	O00472	640 aa	Predicted RBP	12.55	□□□□□ -0.4
MCF2L-223	ENST00000473345	LMOD3	Q0VAK6	560 aa		12.55	□□□□□ -0.4
MCF2L-223	ENST00000473345	RSBN1L	Q6PCB5	846 aa	Predicted RBP	12.55	□□□□□ -0.4
MCF2L-223	ENST00000473345	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	12.55	□□□□□ -0.4
MCF2L-223	ENST00000473345	CCDC102A	Q96A19	550 aa		12.55	□□□□□ -0.4
MCF2L-223	ENST00000473345	RUNDC1	Q96C34	613 aa		12.55	□□□□□ -0.4
MCF2L-223	ENST00000473345	MYD88	Q99836	296 aa		12.55	□□□□□ -0.4
MCF2L-223	ENST00000473345	PSME4	Q14997	1843 aa		12.54	□□□□□ -0.4
MCF2L-223	ENST00000473345	UBE2Q2L	H0YL09	131 aa		12.54	□□□□□ -0.4
MCF2L-223	ENST00000473345	HOXB7	P09629	217 aa		12.54	□□□□□ -0.4
MCF2L-223	ENST00000473345	KLRK1	P26718	216 aa		12.54	□□□□□ -0.4
MCF2L-223	ENST00000473345	NBPF9	Q3BBW0	867 aa		12.54	□□□□□ -0.4
MCF2L-223	ENST00000473345	TXNRD3	Q86VQ6	643 aa		12.54	□□□□□ -0.4
MCF2L-223	ENST00000473345	SULF1	Q8IWU6	871 aa		12.54	□□□□□ -0.4
MCF2L-223	ENST00000473345	C8orf58	Q8NAV2	365 aa		12.54	□□□□□ -0.4
MCF2L-223	ENST00000473345	EYA3	Q99504	573 aa		12.54	□□□□□ -0.4
MCF2L-223	ENST00000473345	ZC3H12C	Q9C0D7	883 aa	Known RBP	12.54	□□□□□ -0.4
MCF2L-223	ENST00000473345	HYPK	Q9NX55	129 aa		12.54	□□□□□ -0.4
MCF2L-223	ENST00000473345	FZD1	Q9UP38	647 aa		12.54	□□□□□ -0.4
MCF2L-223	ENST00000473345	TBC1D8	O95759	1140 aa		12.53	□□□□□ -0.4
MCF2L-223	ENST00000473345	IGKV5-2	P06315	115 aa		12.53	□□□□□ -0.4
MCF2L-223	ENST00000473345	RALBP1	Q15311	655 aa		12.53	□□□□□ -0.4
MCF2L-223	ENST00000473345	TSPYL6	Q8N831	410 aa		12.53	□□□□□ -0.4
MCF2L-223	ENST00000473345	MYOZ2	Q9NPC6	264 aa		12.53	□□□□□ -0.4
MCF2L-223	ENST00000473345	GGA1	Q9UJY5	639 aa		12.53	□□□□□ -0.4
MCF2L-223	ENST00000473345	HPS5	Q9UPZ3	1129 aa		12.53	□□□□□ -0.4
MCF2L-223	ENST00000473345	PAPPA2	Q9BXP8	1791 aa		12.53	□□□□□ -0.4
MCF2L-223	ENST00000473345	PCCA	P05165	728 aa	Predicted RBP	12.52	□□□□□ -0.41
MCF2L-223	ENST00000473345	RIC3	Q7Z5B4	369 aa		12.52	□□□□□ -0.41
MCF2L-223	ENST00000473345	CTU1	Q7Z7A3	348 aa	Known RBP	12.52	□□□□□ -0.41
MCF2L-223	ENST00000473345	AGBL3	Q8NEM8	1001 aa		12.52	□□□□□ -0.41
MCF2L-223	ENST00000473345	ZNF296	Q8WUU4	475 aa	Predicted RBP	12.52	□□□□□ -0.41
MCF2L-223	ENST00000473345	ANKIB1	Q9P2G1	1089 aa		12.52	□□□□□ -0.41
MCF2L-223	ENST00000473345	MYBBP1A	Q9BQG0	1328 aa	Known RBP	12.52	□□□□□ -0.41
MCF2L-223	ENST00000473345	PDE8A	O60658	829 aa		12.51	□□□□□ -0.41
MCF2L-223	ENST00000473345	USP17L8	P0C7I0	530 aa		12.51	□□□□□ -0.41
MCF2L-223	ENST00000473345	MKRN3	Q13064	507 aa	Known RBP	12.51	□□□□□ -0.41
MCF2L-223	ENST00000473345	DACT2	Q5SW24	774 aa		12.51	□□□□□ -0.41
MCF2L-223	ENST00000473345	PCDHAC2	Q9Y5I4	1007 aa		12.51	□□□□□ -0.41
MCF2L-223	ENST00000473345	AOX1	Q06278	1338 aa		12.51	□□□□□ -0.41
MCF2L-223	ENST00000473345	SNAP23	O00161	211 aa		12.5	□□□□□ -0.41
MCF2L-223	ENST00000473345	WNT10B	O00744	389 aa		12.5	□□□□□ -0.41
MCF2L-223	ENST00000473345	CAP1	Q01518	475 aa		12.5	□□□□□ -0.41
MCF2L-223	ENST00000473345	DDX10	Q13206	875 aa	Known RBP	12.5	□□□□□ -0.41
MCF2L-223	ENST00000473345	CCDC191	Q8NCU4	936 aa		12.5	□□□□□ -0.41
MCF2L-223	ENST00000473345	TTLL11	Q8NHH1	800 aa		12.5	□□□□□ -0.41
MCF2L-223	ENST00000473345	METTL22	Q9BUU2	404 aa	Predicted RBP	12.5	□□□□□ -0.41
MCF2L-223	ENST00000473345	GREM2	Q9H772	168 aa		12.5	□□□□□ -0.41
MCF2L-223	ENST00000473345	MINPP1	Q9UNW1	487 aa		12.5	□□□□□ -0.41
MCF2L-223	ENST00000473345	XDH	P47989	1333 aa		12.5	□□□□□ -0.41
MCF2L-223	ENST00000473345	SPEF2	Q9C093	1822 aa		12.49	□□□□□ -0.41
MCF2L-223	ENST00000473345	SSC5D	A1L4H1	1573 aa		12.49	□□□□□ -0.41
MCF2L-223	ENST00000473345	PITPNM2	Q9BZ72	1349 aa		12.49	□□□□□ -0.41
MCF2L-223	ENST00000473345	USP17L3	A6NCW0	530 aa		12.49	□□□□□ -0.41
MCF2L-223	ENST00000473345	USP17L4	A6NCW7	530 aa		12.49	□□□□□ -0.41
MCF2L-223	ENST00000473345	APAF1	O14727	1248 aa		12.49	□□□□□ -0.41
MCF2L-223	ENST00000473345	SASH1	O94885	1247 aa		12.49	□□□□□ -0.41
MCF2L-223	ENST00000473345	CTSW	P56202	376 aa		12.49	□□□□□ -0.41
MCF2L-223	ENST00000473345	PTPN12	Q05209	780 aa	Known RBP	12.49	□□□□□ -0.41

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