RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 BRD7Q9NPI1 651 aa3.1□□□□□ -1.91
UBXN4-207ENST00000471246 PIM2Q9P1W9 311 aa3.1□□□□□ -1.91
UBXN4-207ENST00000471246 ZNF232Q9UNY5 417 aa3.1□□□□□ -1.91
UBXN4-207ENST00000471246 KCNH4Q9UQ05 1017 aa3.1□□□□□ -1.91
UBXN4-207ENST00000471246 PPP1R12BO60237 982 aaPredicted RBP3.09□□□□□ -1.91
UBXN4-207ENST00000471246 NOS2P35228 1153 aa3.09□□□□□ -1.91
UBXN4-207ENST00000471246 HIRAP54198 1017 aaPredicted RBP3.09□□□□□ -1.91
UBXN4-207ENST00000471246 SEC13P55735 322 aa3.09□□□□□ -1.91
UBXN4-207ENST00000471246 DPYDQ12882 1025 aa3.09□□□□□ -1.91
UBXN4-207ENST00000471246 KANK4Q5T7N3 995 aaPredicted RBP3.09□□□□□ -1.91
UBXN4-207ENST00000471246 LARP1Q6PKG0 1096 aaKnown RBP3.09□□□□□ -1.91
UBXN4-207ENST00000471246 POTEAQ6S8J7 498 aa3.09□□□□□ -1.91
UBXN4-207ENST00000471246 RHPN1Q8TCX5 695 aa3.09□□□□□ -1.91
UBXN4-207ENST00000471246 UTP4Q969X6 686 aaKnown RBP3.09□□□□□ -1.91
UBXN4-207ENST00000471246 CHMP3Q9Y3E7 222 aa3.09□□□□□ -1.91
UBXN4-207ENST00000471246 C21orf2O43822 256 aa3.08□□□□□ -1.92
UBXN4-207ENST00000471246 LGR5O75473 907 aa3.08□□□□□ -1.92
UBXN4-207ENST00000471246 ZSCAN22P10073 491 aaPredicted RBP3.08□□□□□ -1.92
UBXN4-207ENST00000471246 CPB1P15086 417 aa3.08□□□□□ -1.92
UBXN4-207ENST00000471246 PERM1Q5SV97 790 aa3.08□□□□□ -1.92
UBXN4-207ENST00000471246 DBX2Q6ZNG2 339 aa3.08□□□□□ -1.92
UBXN4-207ENST00000471246 FAM35AQ86V20 835 aa3.08□□□□□ -1.92
UBXN4-207ENST00000471246 CLEC10AQ8IUN9 316 aa3.08□□□□□ -1.92
UBXN4-207ENST00000471246 ANKMY2Q8IV38 441 aa3.08□□□□□ -1.92
UBXN4-207ENST00000471246 LRRC56Q8IYG6 542 aaPredicted RBP3.08□□□□□ -1.92
UBXN4-207ENST00000471246 ZSCAN18Q8TBC5 510 aaPredicted RBP3.08□□□□□ -1.92
UBXN4-207ENST00000471246 SCG3Q8WXD2 468 aaKnown RBP3.08□□□□□ -1.92
UBXN4-207ENST00000471246 COL26A1Q96A83 441 aa3.08□□□□□ -1.92
UBXN4-207ENST00000471246 FAM46AQ96IP4 442 aaKnown RBP3.08□□□□□ -1.92
UBXN4-207ENST00000471246 HSH2DQ96JZ2 352 aa3.08□□□□□ -1.92
UBXN4-207ENST00000471246 CEP63Q96MT8 703 aa3.08□□□□□ -1.92
UBXN4-207ENST00000471246 ARXQ96QS3 562 aa3.08□□□□□ -1.92
UBXN4-207ENST00000471246 FAM83CQ9BQN1 747 aa3.08□□□□□ -1.92
UBXN4-207ENST00000471246 PHACTR1Q9C0D0 580 aa3.08□□□□□ -1.92
UBXN4-207ENST00000471246 VRTNQ9H8Y1 702 aa3.08□□□□□ -1.92
UBXN4-207ENST00000471246 PAK6Q9NQU5 681 aaPredicted RBP3.08□□□□□ -1.92
UBXN4-207ENST00000471246 FRRS1LQ9P0K9 344 aa3.08□□□□□ -1.92
UBXN4-207ENST00000471246 GPC6Q9Y625 555 aaPredicted RBP3.08□□□□□ -1.92
UBXN4-207ENST00000471246 MEGF11A6BM72 1044 aa3.07□□□□□ -1.92
UBXN4-207ENST00000471246 INHBBP09529 407 aa3.07□□□□□ -1.92
UBXN4-207ENST00000471246 RFX1P22670 979 aa3.07□□□□□ -1.92
UBXN4-207ENST00000471246 CTSWP56202 376 aa3.07□□□□□ -1.92
UBXN4-207ENST00000471246 KRTAP10-2P60368 255 aa3.07□□□□□ -1.92
UBXN4-207ENST00000471246 C1orf53Q5VUE5 145 aa3.07□□□□□ -1.92
UBXN4-207ENST00000471246 STAG2Q8N3U4 1231 aa3.07□□□□□ -1.92
UBXN4-207ENST00000471246 BHLHE22Q8NFJ8 381 aaPredicted RBP3.07□□□□□ -1.92
UBXN4-207ENST00000471246 CHMP7Q8WUX9 453 aaPredicted RBP3.07□□□□□ -1.92
UBXN4-207ENST00000471246 TTC9Q92623 222 aa3.07□□□□□ -1.92
UBXN4-207ENST00000471246 FAM84AQ96KN4 292 aa3.07□□□□□ -1.92
UBXN4-207ENST00000471246 MYRFLQ96LU7 910 aa3.07□□□□□ -1.92
UBXN4-207ENST00000471246 C2orf49Q9BVC5 232 aaPredicted RBP3.07□□□□□ -1.92
UBXN4-207ENST00000471246 ZMYND15Q9H091 742 aa3.07□□□□□ -1.92
UBXN4-207ENST00000471246 NEUROD4Q9HD90 331 aa3.07□□□□□ -1.92
UBXN4-207ENST00000471246 HCN4Q9Y3Q4 1203 aa3.07□□□□□ -1.92
UBXN4-207ENST00000471246 GTF3C3Q9Y5Q9 886 aa3.07□□□□□ -1.92
UBXN4-207ENST00000471246 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP3.06□□□□□ -1.92
UBXN4-207ENST00000471246 ZBTB42B2RXF5 422 aa3.06□□□□□ -1.92
UBXN4-207ENST00000471246 WISP1O95388 367 aa3.06□□□□□ -1.92
UBXN4-207ENST00000471246 FOSL1P15407 271 aa3.06□□□□□ -1.92
UBXN4-207ENST00000471246 IGFBP4P22692 258 aa3.06□□□□□ -1.92
UBXN4-207ENST00000471246 TYRO3Q06418 890 aa3.06□□□□□ -1.92
UBXN4-207ENST00000471246 UVSSAQ2YD98 709 aa3.06□□□□□ -1.92
UBXN4-207ENST00000471246 CDCA8Q53HL2 280 aa3.06□□□□□ -1.92
UBXN4-207ENST00000471246 ATAD2Q6PL18 1390 aa3.06□□□□□ -1.92
UBXN4-207ENST00000471246 GGNQ86UU5 652 aa3.06□□□□□ -1.92
UBXN4-207ENST00000471246 FAM20CQ8IXL6 584 aa3.06□□□□□ -1.92
UBXN4-207ENST00000471246 ALDH16A1Q8IZ83 802 aa3.06□□□□□ -1.92
UBXN4-207ENST00000471246 AGBL5Q8NDL9 886 aa3.06□□□□□ -1.92
UBXN4-207ENST00000471246 FLCNQ8NFG4 579 aa3.06□□□□□ -1.92
UBXN4-207ENST00000471246 GAS2L2Q8NHY3 880 aa3.06□□□□□ -1.92
UBXN4-207ENST00000471246 FAM168AQ92567 244 aa3.06□□□□□ -1.92
UBXN4-207ENST00000471246 NGLY1Q96IV0 654 aa3.06□□□□□ -1.92
UBXN4-207ENST00000471246 C20orf173Q96LM9 149 aa3.06□□□□□ -1.92
UBXN4-207ENST00000471246 MFSD14AQ96MC6 490 aa3.06□□□□□ -1.92
UBXN4-207ENST00000471246 HINFPQ9BQA5 517 aa3.06□□□□□ -1.92
UBXN4-207ENST00000471246 ZMIZ1Q9ULJ6 1067 aa3.06□□□□□ -1.92
UBXN4-207ENST00000471246 NOVA2Q9UNW9 492 aaKnown RBP3.06□□□□□ -1.92
UBXN4-207ENST00000471246 LEMD3Q9Y2U8 911 aa3.06□□□□□ -1.92
UBXN4-207ENST00000471246 ARID3CA6NKF2 412 aa3.05□□□□□ -1.92
UBXN4-207ENST00000471246 BIN1O00499 593 aa3.05□□□□□ -1.92
UBXN4-207ENST00000471246 FOXO3O43524 673 aa3.05□□□□□ -1.92
UBXN4-207ENST00000471246 RAP1GAPP47736 663 aa3.05□□□□□ -1.92
UBXN4-207ENST00000471246 SETDB1Q15047 1291 aa3.05□□□□□ -1.92
UBXN4-207ENST00000471246 RTN1Q16799 776 aa3.05□□□□□ -1.92
UBXN4-207ENST00000471246 ELMSAN1Q6PJG2 1045 aa3.05□□□□□ -1.92
UBXN4-207ENST00000471246 BEND4Q6ZU67 534 aa3.05□□□□□ -1.92
UBXN4-207ENST00000471246 ZNF280CQ8ND82 737 aa3.05□□□□□ -1.92
UBXN4-207ENST00000471246 FAM200AQ8TCP9 573 aa3.05□□□□□ -1.92
UBXN4-207ENST00000471246 STK32AQ8WU08 396 aa3.05□□□□□ -1.92
UBXN4-207ENST00000471246 TMEM40Q8WWA1 233 aa3.05□□□□□ -1.92
UBXN4-207ENST00000471246 CCDC97Q96F63 343 aaPredicted RBP3.05□□□□□ -1.92
UBXN4-207ENST00000471246 SUSD3Q96L08 255 aa3.05□□□□□ -1.92
UBXN4-207ENST00000471246 CEP41Q9BYV8 373 aa3.05□□□□□ -1.92
UBXN4-207ENST00000471246 FAM53CQ9NYF3 392 aa3.05□□□□□ -1.92
UBXN4-207ENST00000471246 TGFBR3LH3BV60 316 aa3.04□□□□□ -1.92
UBXN4-207ENST00000471246 F13BP05160 661 aa3.04□□□□□ -1.92
UBXN4-207ENST00000471246 WEE1P30291 646 aa3.04□□□□□ -1.92
UBXN4-207ENST00000471246 HIF1AQ16665 826 aa3.04□□□□□ -1.92
UBXN4-207ENST00000471246 SWI5Q1ZZU3 235 aa3.04□□□□□ -1.92
UBXN4-207ENST00000471246 IER5Q5VY09 327 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms