RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 H2AFB1P0C5Y9 115 aa8.4□□□□□ -1.06
CCDC88A-210ENST00000468534 H2AFB2P0C5Z0 115 aa8.4□□□□□ -1.06
CCDC88A-210ENST00000468534 NOS3P29474 1203 aa8.4□□□□□ -1.06
CCDC88A-210ENST00000468534 ZAP70P43403 619 aa8.4□□□□□ -1.06
CCDC88A-210ENST00000468534 IGF2-ASQ6U949 168 aa8.4□□□□□ -1.06
CCDC88A-210ENST00000468534 GPR152Q8TDT2 470 aa8.4□□□□□ -1.06
CCDC88A-210ENST00000468534 ZMYND15Q9H091 742 aa8.4□□□□□ -1.06
CCDC88A-210ENST00000468534 TRIM33Q9UPN9 1127 aa8.4□□□□□ -1.06
CCDC88A-210ENST00000468534 SOX18P35713 384 aa8.39□□□□□ -1.07
CCDC88A-210ENST00000468534 RANGAP1P46060 587 aaPredicted RBP8.39□□□□□ -1.07
CCDC88A-210ENST00000468534 PBXIP1Q96AQ6 731 aa8.39□□□□□ -1.07
CCDC88A-210ENST00000468534 SSBP4Q9BWG4 385 aaPredicted RBP8.39□□□□□ -1.07
CCDC88A-210ENST00000468534 FAM13BQ9NYF5 915 aa8.39□□□□□ -1.07
CCDC88A-210ENST00000468534 ARID3CA6NKF2 412 aa8.38□□□□□ -1.07
CCDC88A-210ENST00000468534 CLP1Q92989 425 aaKnown RBP8.38□□□□□ -1.07
CCDC88A-210ENST00000468534 MEGF10Q96KG7 1140 aa8.38□□□□□ -1.07
CCDC88A-210ENST00000468534 DLL1O00548 723 aa8.37□□□□□ -1.07
CCDC88A-210ENST00000468534 ZBTB39O15060 712 aa8.37□□□□□ -1.07
CCDC88A-210ENST00000468534 ALX3O95076 343 aa8.37□□□□□ -1.07
CCDC88A-210ENST00000468534 ATP11AP98196 1134 aa8.37□□□□□ -1.07
CCDC88A-210ENST00000468534 COL13A1Q5TAT6 717 aaPredicted RBP8.37□□□□□ -1.07
CCDC88A-210ENST00000468534 STIM2Q9P246 746 aa8.37□□□□□ -1.07
CCDC88A-210ENST00000468534 SLAIN2Q9P270 581 aa8.37□□□□□ -1.07
CCDC88A-210ENST00000468534 ATP2B4P23634 1241 aa8.36□□□□□ -1.07
CCDC88A-210ENST00000468534 SCNN1AP37088 669 aa8.36□□□□□ -1.07
CCDC88A-210ENST00000468534 TTC39BQ5VTQ0 682 aaPredicted RBP8.36□□□□□ -1.07
CCDC88A-210ENST00000468534 ERICH6Q7L0X2 663 aa8.36□□□□□ -1.07
CCDC88A-210ENST00000468534 OR13H1Q8NG92 308 aa8.36□□□□□ -1.07
CCDC88A-210ENST00000468534 LACRTQ9GZZ8 138 aa8.36□□□□□ -1.07
CCDC88A-210ENST00000468534 SEPT3Q9UH03 358 aa8.36□□□□□ -1.07
CCDC88A-210ENST00000468534 HOXD8P13378 290 aaPredicted RBP8.35□□□□□ -1.07
CCDC88A-210ENST00000468534 CDC25BP30305 580 aa8.35□□□□□ -1.07
CCDC88A-210ENST00000468534 HYAL2Q12891 473 aa8.35□□□□□ -1.07
CCDC88A-210ENST00000468534 CEP135Q66GS9 1140 aa8.35□□□□□ -1.07
CCDC88A-210ENST00000468534 TXNDC11Q6PKC3 985 aa8.35□□□□□ -1.07
CCDC88A-210ENST00000468534 SPACA7Q96KW9 195 aa8.35□□□□□ -1.07
CCDC88A-210ENST00000468534 AKTIPQ9H8T0 292 aa8.35□□□□□ -1.07
CCDC88A-210ENST00000468534 ZFP64Q9NPA5 681 aa8.35□□□□□ -1.07
CCDC88A-210ENST00000468534 FNDC3AQ9Y2H6 1198 aaKnown RBP8.35□□□□□ -1.07
CCDC88A-210ENST00000468534 SETDB1Q15047 1291 aa8.34□□□□□ -1.07
CCDC88A-210ENST00000468534 ARTNQ5T4W7 220 aa8.34□□□□□ -1.07
CCDC88A-210ENST00000468534 ATCAYQ86WG3 371 aa8.34□□□□□ -1.07
CCDC88A-210ENST00000468534 ABTB2Q8N961 1025 aa8.34□□□□□ -1.07
CCDC88A-210ENST00000468534 MRPL18Q9H0U6 180 aaKnown RBP8.34□□□□□ -1.07
CCDC88A-210ENST00000468534 SERPINA10Q9UK55 444 aa8.34□□□□□ -1.07
CCDC88A-210ENST00000468534 LINC01387J3KSC0 135 aa8.33□□□□□ -1.08
CCDC88A-210ENST00000468534 CYP2E1P05181 493 aaPredicted RBP8.33□□□□□ -1.08
CCDC88A-210ENST00000468534 AGGF1Q8N302 714 aaeCLIP8.33□□□□□ -1.088e-6■□□□□ 8.6
CCDC88A-210ENST00000468534 ABI2Q9NYB9 513 aaPredicted RBP8.33□□□□□ -1.08
CCDC88A-210ENST00000468534 PPME1Q9Y570 386 aa8.33□□□□□ -1.08
CCDC88A-210ENST00000468534 F8W735 103 aaPredicted RBP8.32□□□□□ -1.08
CCDC88A-210ENST00000468534 NUDT16Q96DE0 195 aaKnown RBP8.32□□□□□ -1.08
CCDC88A-210ENST00000468534 RASSF4Q9H2L5 321 aa8.32□□□□□ -1.08
CCDC88A-210ENST00000468534 SMNDC1O75940 238 aaKnown RBP eCLIP8.31□□□□□ -1.08
CCDC88A-210ENST00000468534 GLB1P16278 677 aa8.31□□□□□ -1.08
CCDC88A-210ENST00000468534 NBPF11Q86T75 865 aa8.31□□□□□ -1.08
CCDC88A-210ENST00000468534 NCAPG2Q86XI2 1143 aa8.31□□□□□ -1.08
CCDC88A-210ENST00000468534 SRA1Q9HD15 236 aaKnown RBP8.31□□□□□ -1.08
CCDC88A-210ENST00000468534 TMEM63CQ9P1W3 806 aa8.31□□□□□ -1.08
CCDC88A-210ENST00000468534 KANSL3Q9P2N6 904 aa8.31□□□□□ -1.08
CCDC88A-210ENST00000468534 ADAMTSL4Q6UY14 1074 aa8.3□□□□□ -1.08
CCDC88A-210ENST00000468534 PRR23CQ6ZRP0 262 aa8.3□□□□□ -1.08
CCDC88A-210ENST00000468534 MAP4K3Q8IVH8 894 aa8.3□□□□□ -1.08
CCDC88A-210ENST00000468534 GALNT11Q8NCW6 608 aa8.3□□□□□ -1.08
CCDC88A-210ENST00000468534 CARD10Q9BWT7 1032 aa8.3□□□□□ -1.08
CCDC88A-210ENST00000468534 CDC27P30260 824 aa8.29□□□□□ -1.08
CCDC88A-210ENST00000468534 ZNF438Q7Z4V0 828 aa8.29□□□□□ -1.08
CCDC88A-210ENST00000468534 CACTIN-AS1Q8N1I8 211 aa8.29□□□□□ -1.08
CCDC88A-210ENST00000468534 EDEM1Q92611 657 aa8.29□□□□□ -1.08
CCDC88A-210ENST00000468534 MUC3BQ9H195 1237 aa8.29□□□□□ -1.08
CCDC88A-210ENST00000468534 ELP3Q9H9T3 547 aa8.29□□□□□ -1.08
CCDC88A-210ENST00000468534 WISP1O95388 367 aa8.28□□□□□ -1.08
CCDC88A-210ENST00000468534 DNM1Q05193 864 aaKnown RBP8.28□□□□□ -1.08
CCDC88A-210ENST00000468534 LRP8Q14114 963 aa8.28□□□□□ -1.08
CCDC88A-210ENST00000468534 DZIP1LQ8IYY4 767 aaKnown RBP8.28□□□□□ -1.08
CCDC88A-210ENST00000468534 TMEM130Q8N3G9 435 aa8.28□□□□□ -1.08
CCDC88A-210ENST00000468534 DCAF11Q8TEB1 546 aa8.28□□□□□ -1.08
CCDC88A-210ENST00000468534 SH2B1Q9NRF2 756 aaPredicted RBP8.28□□□□□ -1.08
CCDC88A-210ENST00000468534 A6NHS1 94 aa8.27□□□□□ -1.09
CCDC88A-210ENST00000468534 KIF4AO95239 1232 aa8.27□□□□□ -1.09
CCDC88A-210ENST00000468534 PDE12Q6L8Q7 609 aaKnown RBP8.27□□□□□ -1.09
CCDC88A-210ENST00000468534 ACAD11Q709F0 780 aa8.27□□□□□ -1.09
CCDC88A-210ENST00000468534 PBX4Q9BYU1 374 aa8.27□□□□□ -1.09
CCDC88A-210ENST00000468534 CNTN3Q9P232 1028 aa8.27□□□□□ -1.09
CCDC88A-210ENST00000468534 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.27□□□□□ -1.09
CCDC88A-210ENST00000468534 FAM177BA6PVY3 158 aa8.26□□□□□ -1.09
CCDC88A-210ENST00000468534 HYAL3O43820 417 aaPredicted RBP8.26□□□□□ -1.09
CCDC88A-210ENST00000468534 EPHA1P21709 976 aa8.26□□□□□ -1.09
CCDC88A-210ENST00000468534 CD68P34810 354 aaPredicted RBP8.26□□□□□ -1.09
CCDC88A-210ENST00000468534 C8orf34Q49A92 452 aa8.26□□□□□ -1.09
CCDC88A-210ENST00000468534 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.26□□□□□ -1.09
CCDC88A-210ENST00000468534 HELQQ8TDG4 1101 aa8.26□□□□□ -1.09
CCDC88A-210ENST00000468534 KCNK4Q9NYG8 393 aa8.26□□□□□ -1.09
CCDC88A-210ENST00000468534 ACPPP15309 386 aa8.25□□□□□ -1.09
CCDC88A-210ENST00000468534 FSTP19883 344 aa8.25□□□□□ -1.09
CCDC88A-210ENST00000468534 MPSTP25325 297 aa8.25□□□□□ -1.09
CCDC88A-210ENST00000468534 MTMR3Q13615 1198 aa8.25□□□□□ -1.09
CCDC88A-210ENST00000468534 FAM117BQ6P1L5 589 aa8.25□□□□□ -1.09
CCDC88A-210ENST00000468534 CCDC82Q8N4S0 544 aa8.25□□□□□ -1.09
CCDC88A-210ENST00000468534 CEP120Q8N960 986 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms